mRNA_M-pyrifera_M_contig91222.21142.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91222.21142.1
Unique NamemRNA_M-pyrifera_M_contig91222.21142.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: UPI001C899FCD (heparan-sulfate 6-O-sulfotransferase 3-B-like n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C899FCD)

HSP 1 Score: 76.3 bits (186), Expect = 2.090e-13
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGCRPRS-WSETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRRLHAI 393
            L  F++C  P N A NR VR LA     GC   S  +E++    LL  AK+ L++  AF GL E +R+++ LFERTFRL F+S   + +  ST AA  +L   +R +I L N+ D+QLY FA+ LF +R   I
Sbjct:  238 LHEFMDC--PSNLANNRQVRMLADLSLVGCYNLSTMNESERNPILLASAKSNLKN-MAFYGLTEFQRKTQYLFERTFRLQFISAFTQIN--STRAANVELRDDMRRRIELLNFLDMQLYEFAKELFLQRYQFI 365          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: A0A6P6N7V6_CARAU (Heparan-sulfate 6-O-sulfotransferase n=4 Tax=Cyprinoidei TaxID=30727 RepID=A0A6P6N7V6_CARAU)

HSP 1 Score: 73.6 bits (179), Expect = 5.330e-13
Identity = 55/133 (41.35%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGCRPRS-WSETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRRLHAI 393
            L  F++C  P N A NR VR LA     GC   S  +E++    LL  AK+ L++  AF GL E +R+++ LFERTFRL F+S   + +  ST AA  +L   +R +I   N+ D+QLY FA+ LF +R   I
Sbjct:   63 LHEFMDC--PSNLANNRQVRMLADLSLVGCYNLSTMNESERNPILLASAKSNLKN-MAFYGLTEFQRKTQYLFERTFRLRFISAFTQIN--STRAANVELRDDMRRRIEQLNFLDMQLYEFAKELFLQRYQFI 190          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: A0A3B3RUQ2_9TELE (Heparan-sulfate 6-O-sulfotransferase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RUQ2_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 7.400e-13
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGC-RPRSWSETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRR 381
            L  F++C  P N A NR VR LA     GC    S +E++ +  LL  AKA L++  AF GL E +R+++ LFERTFRL F+S   + +  ST AA   +   +R +I   N  D+QLY FA+ LF +R
Sbjct:  241 LSEFMDC--PSNLANNRQVRMLADLSLVGCYNLSSMNESERSRTLLSSAKANLKN-MAFYGLTEFQRKTQYLFERTFRLCFISAFTQIN--STRAAAVDVAEDVRRRIEALNGLDVQLYEFAKDLFLQR 364          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: A0A5A9P4V5_9TELE (Heparan-sulfate 6-O-sulfotransferase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9P4V5_9TELE)

HSP 1 Score: 72.4 bits (176), Expect = 4.070e-12
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGCRPRS-WSETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRR 381
            L  F++C  P N A NR VR LA     GC   S  +E++    LL  A + L++  AF GL E +R+++ LFERTFRL F+S   +++  ST AA  +L   +R +I   N+ D+QLY FA+ LF +R
Sbjct:  184 LHEFMDC--PYNLANNRQVRMLADLSLVGCYNLSTMNESERNPILLASAMSNLKN-MAFYGLTEFQRKTQYLFERTFRLRFISAFTQFN--STRAANVELREDMRRRIEKLNFLDMQLYEFAKDLFLQR 307          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: A0A8C9R4T5_SCLFO (Heparan-sulfate 6-O-sulfotransferase n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9R4T5_SCLFO)

HSP 1 Score: 72.4 bits (176), Expect = 4.640e-12
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGCRPRSW-SETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRR 381
            L  F++C  P N A NR VR LA     GC   S+ SE++ +  LL  AK  L++  AF GL E +R+++ LFERTFRL F+S   + +  ST AA   +   +R +I   N+ D+QLY +A+ LF +R
Sbjct:  222 LREFMDC--PSNLANNRQVRMLADLSLVGCYNLSFMSESERSHILLSSAKTNLRN-MAFFGLTEFQRKTQYLFERTFRLRFISAFTQIN--STRAAGVDVDEDVRRRIDALNFLDVQLYEYAKDLFLQR 345          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: A0A8C9WQ99_SCLFO (Heparan-sulfate 6-O-sulfotransferase n=6 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9WQ99_SCLFO)

HSP 1 Score: 72.4 bits (176), Expect = 4.890e-12
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGCRPRSW-SETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRR 381
            L  F++C  P N A NR VR LA     GC   S+ SE++ +  LL  AK  L++  AF GL E +R+++ LFERTFRL F+S   + +  ST AA   +   +R +I   N+ D+QLY +A+ LF +R
Sbjct:  248 LREFMDC--PSNLANNRQVRMLADLSLVGCYNLSFMSESERSHILLSSAKTNLRN-MAFFGLTEFQRKTQYLFERTFRLRFISAFTQIN--STRAAGVDVDEDVRRRIDALNFLDVQLYEYAKDLFLQR 371          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: W5KUI2_ASTMX (Heparan-sulfate 6-O-sulfotransferase n=4 Tax=Characoidei TaxID=1489739 RepID=W5KUI2_ASTMX)

HSP 1 Score: 72.0 bits (175), Expect = 6.610e-12
Identity = 53/130 (40.77%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGC-RPRSWSETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRRL 384
            L  F++C  P N A NR VR LA     GC    S +E++    LL  A + L++  AF GL E +R+++ LFERTFRL F+S   + +  ST AA  +L   +R +I   N+ D+QLY FA+ LF +R+
Sbjct:  250 LREFMDC--PSNLASNRQVRMLADLSLVGCYNLSSMNESERNPILLASAMSNLKN-MAFYGLTEFQRKTQYLFERTFRLRFISAFTQLN--STRAANVELREDVRRRIERLNFLDVQLYEFAKDLFLQRV 374          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: A0A8C9QW32_SCLFO (Heparan-sulfate 6-O-sulfotransferase n=3 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9QW32_SCLFO)

HSP 1 Score: 71.6 bits (174), Expect = 8.660e-12
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGCRPRSW-SETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRRLHAI 393
            L  F++CS   N A NR VR LA     GC   S+ SE++ +  LL  AK  L++  AF GL E +R+++ LFERTFRL F+S   + +  ST AA   +   +R++I   N  D+QLY +A+ LF +R   +
Sbjct:  222 LHDFMDCSS--NLANNRQVRMLADLSLVGCYNLSFMSESERSHILLSSAKTNLRN-MAFFGLTEFQRKTQYLFERTFRLRFISAFTQIN--STRAAGVDVGEDVRQRIEALNMLDVQLYEYAKDLFLQRFQYV 349          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: UPI0007402CEA (heparan-sulfate 6-O-sulfotransferase 2-like n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI0007402CEA)

HSP 1 Score: 67.8 bits (164), Expect = 1.450e-10
Identity = 52/129 (40.31%), Postives = 72/129 (55.81%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGC-RPRSWSETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRR 381
            LE F+ C  P N A NR  R LA     GC    + SE      LLD AK  LQ   AF GL E +R+++ LFERTFR++F+S   + +  ST A+  ++    + +IR  N  D++LY FA+ LF +R
Sbjct:   92 LEEFMGC--PHNLANNRQARMLADLSLVGCYNLTAMSEEARGRVLLDSAKRNLQ-GMAFFGLTEFQRKTQYLFERTFRMAFISPFTQLN--STRASGVEVAAAAQARIRRLNGLDVELYDFARDLFLQR 215          
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Match: A0A8J1UGU0_OWEFU (Heparan-sulfate 6-O-sulfotransferase n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UGU0_OWEFU)

HSP 1 Score: 66.6 bits (161), Expect = 5.240e-10
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    4 LEAFVNCSGPENWAYNRMVRHLA--LDAGCRPRS-WSETQWTAYLLDRAKAALQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPRPLREKIRLGNWADLQLYRFAQTLFHRRLHAIVG 399
            L  F+ C  P N A NR  R LA    A C   S  S+T+    +L+ AK  L    AF GL E +R ++++FE TF++ F++   +Y+         +L     E+I+  N  D++LY++A+TLF  RLHA  G
Sbjct:  254 LNEFIKC--PYNLANNRQARMLADLSLAKCYDTSAMSKTERDKVILESAKQNLLD-MAFFGLTEYQRYTQMMFEDTFKIKFINDFIQYNETHASDVTEKLSSEDIEEIQKINHLDIELYKYAKTLFFERLHAKFG 385          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91222.21142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
UPI001C899FCD2.090e-1342.11heparan-sulfate 6-O-sulfotransferase 3-B-like n=1 ... [more]
A0A6P6N7V6_CARAU5.330e-1341.35Heparan-sulfate 6-O-sulfotransferase n=4 Tax=Cypri... [more]
A0A3B3RUQ2_9TELE7.400e-1341.86Heparan-sulfate 6-O-sulfotransferase n=1 Tax=Param... [more]
A0A5A9P4V5_9TELE4.070e-1241.09Heparan-sulfate 6-O-sulfotransferase n=1 Tax=Tripl... [more]
A0A8C9R4T5_SCLFO4.640e-1241.09Heparan-sulfate 6-O-sulfotransferase n=1 Tax=Scler... [more]
A0A8C9WQ99_SCLFO4.890e-1241.09Heparan-sulfate 6-O-sulfotransferase n=6 Tax=Scler... [more]
W5KUI2_ASTMX6.610e-1240.77Heparan-sulfate 6-O-sulfotransferase n=4 Tax=Chara... [more]
A0A8C9QW32_SCLFO8.660e-1239.85Heparan-sulfate 6-O-sulfotransferase n=3 Tax=Scler... [more]
UPI0007402CEA1.450e-1040.31heparan-sulfate 6-O-sulfotransferase 2-like n=1 Ta... [more]
A0A8J1UGU0_OWEFU5.240e-1035.56Heparan-sulfate 6-O-sulfotransferase n=1 Tax=Oweni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91222contigM-pyrifera_M_contig91222:155..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score77.8
Seed ortholog evalue4.8e-12
Seed eggNOG ortholog10029.XP_007622022.1
Preferred nameHS6ST2
KEGG koko:K08102
KEGG Pathwayko00534,map00534
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0015012,GO:0015015,GO:0016020,GO:0016740,GO:0016782,GO:0017095,GO:0019538,GO:0030166,GO:0030201,GO:0030203,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0034483,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Sulfotransferase family
EggNOG OGs35GJD@314146,38B5I@33154,3BBTY@33208,3CRXJ@33213,3JFZE@40674,480EU@7711,491QR@7742,4Q2CI@9989,KOG3955@1,KOG3955@2759
COG Functional cat.GM
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816824.5834413-CDS-M-pyrifera_M_contig91222:154..6011622816824.5834413-CDS-M-pyrifera_M_contig91222:154..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91222 155..601 +
1692278200.1575105-CDS-M-pyrifera_M_contig91222:154..6011692278200.1575105-CDS-M-pyrifera_M_contig91222:154..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91222 155..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91222.21142.1prot_M-pyrifera_M_contig91222.21142.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91222 155..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91222.21142.1

>prot_M-pyrifera_M_contig91222.21142.1 ID=prot_M-pyrifera_M_contig91222.21142.1|Name=mRNA_M-pyrifera_M_contig91222.21142.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
PLEAFVNCSGPENWAYNRMVRHLALDAGCRPRSWSETQWTAYLLDRAKAA
LQHAFAFVGLEERRRESEVLFERTFRLSFLSLAKEYHAQSTDAAVAQLPR
PLREKIRLGNWADLQLYRFAQTLFHRRLHAIVGPQHSPLAPKRAVQQRM
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mRNA from alignment at M-pyrifera_M_contig91222:155..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91222.21142.1 ID=mRNA_M-pyrifera_M_contig91222.21142.1|Name=mRNA_M-pyrifera_M_contig91222.21142.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig91222:155..601+ (Macrocystis pyrifera P11B4 male)
CCTCTGGAGGCGTTTGTGAACTGCAGCGGTCCTGAGAACTGGGCGTACAA CCGCATGGTGCGGCACCTGGCGTTGGACGCGGGGTGCCGGCCTCGCTCGT GGAGCGAGACGCAGTGGACAGCGTATTTGCTGGACCGGGCCAAGGCGGCG TTGCAGCACGCGTTTGCGTTTGTGGGTCTGGAGGAGCGGAGGAGGGAGAG CGAGGTTTTGTTCGAACGCACTTTTCGGCTCTCCTTCCTCTCCCTGGCCA AGGAGTACCACGCCCAGTCCACAGACGCGGCCGTGGCGCAGCTGCCGCGG CCTTTGCGCGAGAAAATTCGGCTCGGAAACTGGGCAGACCTGCAACTCTA CCGTTTCGCACAAACGCTCTTCCACAGACGCCTCCACGCCATCGTCGGAC CCCAACACTCCCCGCTCGCCCCAAAAAGAGCCGTCCAGCAAAGGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91222:155..601+

>mRNA_M-pyrifera_M_contig91222.21142.1 ID=mRNA_M-pyrifera_M_contig91222.21142.1|Name=mRNA_M-pyrifera_M_contig91222.21142.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig91222:155..601+ (Macrocystis pyrifera P11B4 male)
CCTCTGGAGGCGTTTGTGAACTGCAGCGGTCCTGAGAACTGGGCGTACAA
CCGCATGGTGCGGCACCTGGCGTTGGACGCGGGGTGCCGGCCTCGCTCGT
GGAGCGAGACGCAGTGGACAGCGTATTTGCTGGACCGGGCCAAGGCGGCG
TTGCAGCACGCGTTTGCGTTTGTGGGTCTGGAGGAGCGGAGGAGGGAGAG
CGAGGTTTTGTTCGAACGCACTTTTCGGCTCTCCTTCCTCTCCCTGGCCA
AGGAGTACCACGCCCAGTCCACAGACGCGGCCGTGGCGCAGCTGCCGCGG
CCTTTGCGCGAGAAAATTCGGCTCGGAAACTGGGCAGACCTGCAACTCTA
CCGTTTCGCACAAACGCTCTTCCACAGACGCCTCCACGCCATCGTCGGAC
CCCAACACTCCCCGCTCGCCCCAAAAAGAGCCGTCCAGCAAAGGATGCCT
CTGGAGGCGTTTGTGAACTGCAGCGGTCCTGAGAACTGGGCGTACAACCG
CATGGTGCGGCACCTGGCGTTGGACGCGGGGTGCCGGCCTCGCTCGTGGA
GCGAGACGCAGTGGACAGCGTATTTGCTGGACCGGGCCAAGGCGGCGTTG
CAGCACGCGTTTGCGTTTGTGGGTCTGGAGGAGCGGAGGAGGGAGAGCGA
GGTTTTGTTCGAACGCACTTTTCGGCTCTCCTTCCTCTCCCTGGCCAAGG
AGTACCACGCCCAGTCCACAGACGCGGCCGTGGCGCAGCTGCCGCGGCCT
TTGCGCGAGAAAATTCGGCTCGGAAACTGGGCAGACCTGCAACTCTACCG
TTTCGCACAAACGCTCTTCCACAGACGCCTCCACGCCATCGTCGGACCCC
AACACTCCCCGCTCGCCCCAAAAAGAGCCGTCCAGCAAAGGATG
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