mRNA_M-pyrifera_M_contig91197.21134.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91197.21134.1
Unique NamemRNA_M-pyrifera_M_contig91197.21134.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91197.21134.1 vs. uniprot
Match: X1RSB4_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1RSB4_9ZZZZ)

HSP 1 Score: 68.9 bits (167), Expect = 1.320e-11
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:  160 VILGADATDDVTINGEIQ------GAVPLILEGGVDDAFE-TTLSPTEPTQDNAITLPDASGEVVLTGA-TLSNDIAVTTDGSGQLVNALDAQVFTVES 432
            V LG   +D VTI+G +Q      G   ++ +G   DA   TT + T+PT    I  PD SG VVL+GA  + N++AV+TD SGQLVNA+D Q F V S
Sbjct:   94 VALGNAESDAVTISGTVQPGTLVTGQSAIVFDGSTVDATNRTTFNITDPTAARTINFPDRSGTVVLSGAGAMQNNLAVSTDASGQLVNAVDGQDFNVNS 192
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BLAST of mRNA_M-pyrifera_M_contig91197.21134.1 vs. uniprot
Match: A0A2A5FTJ2_9FLAO (Uncharacterized protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2A5FTJ2_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 2.150e-8
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  148 SDDDVILGADATDDVTIN-------GEIQGAVPLILEGGVDDAFETTLSPTEPTQDNAITLPDASGEVVL 336
            S+  + L   A  D+T +       G + GA P+ILEG   DAFETT++ T+PT DN ITLPDASG VV+
Sbjct:  974 SESSIQLAISAAGDLTFDQTQITGLGTLAGATPIILEGATADAFETTIAVTDPTADNTITLPDASGTVVI 1043
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BLAST of mRNA_M-pyrifera_M_contig91197.21134.1 vs. uniprot
Match: A0A2D9GDU3_9FLAO (Collar domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2D9GDU3_9FLAO)

HSP 1 Score: 56.6 bits (135), Expect = 1.540e-6
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  169 GADATDDVTINGEIQGAVPLILEGGVDDAFETTLSPTEPTQDNAITLPDASGEVVLTGATLSNDIAVT 372
            G   T  VT+NG++      I EG  +DA ETTL+  +PTQDN ITLP+ASG V L  AT +  I  T
Sbjct:  117 GGTITGSVTVNGDV------IFEGLTEDANETTLTVVDPTQDNTITLPNASGHVPLLAATSTTQITAT 178
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BLAST of mRNA_M-pyrifera_M_contig91197.21134.1 vs. uniprot
Match: A0A1W9WPG2_9GAMM (Peptidase S74 domain-containing protein n=1 Tax=Beggiatoa sp. 4572_84 TaxID=1972449 RepID=A0A1W9WPG2_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 2.110e-6
Identity = 38/86 (44.19%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:  160 VILGADATDDVTINGEIQGAVPLILEGGVDDAFETTLSPTEPTQDNAITLPDASGEVVLTGATLSNDIAVTTDGSGQLVNALDAQV 417
            V LG  ATD VT+ G       L+LEG   D  ETTL+ T+PT D  ITLP+ASG VVL   T   D  +     G  V   D  V
Sbjct:  187 VTLGDAATDTVTVTGS------LLLEGATADDHETTLAVTDPTADQTITLPNASGTVVLESTTACTDNKILKKSGGVWVCDNDTSV 266
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BLAST of mRNA_M-pyrifera_M_contig91197.21134.1 vs. uniprot
Match: A0A381Y4Y9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381Y4Y9_9ZZZZ)

HSP 1 Score: 53.1 bits (126), Expect = 9.950e-6
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:  226 LILEGGVDDAFETTLSPTEPTQDNAITLPDASGEVVLTGATLSNDIAVTTDGSGQLVNALDAQVFTVES 432
            LI EG  DDAFETT + ++P+ D  +T+PDA G ++LTGA      A +    G + +A  A+  T+ S
Sbjct:   41 LIFEGTTDDAFETTFTVSDPSADRTVTIPDADGTILLTGAA-----AFSVADGGTIGSATSAEAMTIAS 104
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BLAST of mRNA_M-pyrifera_M_contig91197.21134.1 vs. uniprot
Match: A0A2D6P746_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6P746_9ARCH)

HSP 1 Score: 50.8 bits (120), Expect = 2.550e-5
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  169 GADATDDVTINGEIQGAVPLILEGGVDDAFETTLSPTEPTQDNAITLPDASGEVVLTGATLSNDI 363
            GA  T+D+T++G       LI EG   +A+ETTL+  EPT DN +TLP+ASG + + G  L+  I
Sbjct:   63 GAVTTNDITLDG-----ANLIFEGYQANAYETTLTAAEPTADNTVTLPNASGTLAMDGDALAYGI 122
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BLAST of mRNA_M-pyrifera_M_contig91197.21134.1 vs. uniprot
Match: A0A2E4JSZ4_9ARCH (Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon TaxID=2026795 RepID=A0A2E4JSZ4_9ARCH)

HSP 1 Score: 52.4 bits (124), Expect = 3.970e-5
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:  169 GADATDDVTINGEIQGAVPLILEGGVDDAFETTLSPTEPTQDNAITLPDASGEVVLTGATLSNDIAVTTDGS 384
            G   T  + ++  I+    +I EG   DA+ETTLS T+PT D  ITLP+ +G V+ TG T + +  +  D S
Sbjct:  149 GGTLTGALIVSSNIEVGASVIFEGATADAYETTLSVTDPTADRTITLPNVTGTVITTGDTGTVNSTILADNS 220
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91197.21134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
X1RSB4_9ZZZZ1.320e-1145.45Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A2A5FTJ2_9FLAO2.150e-848.57Uncharacterized protein (Fragment) n=1 Tax=Flavoba... [more]
A0A2D9GDU3_9FLAO1.540e-648.53Collar domain-containing protein n=1 Tax=Flavobact... [more]
A0A1W9WPG2_9GAMM2.110e-644.19Peptidase S74 domain-containing protein n=1 Tax=Be... [more]
A0A381Y4Y9_9ZZZZ9.950e-640.58Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A2D6P746_9ARCH2.550e-544.62Uncharacterized protein n=1 Tax=Candidatus Woesear... [more]
A0A2E4JSZ4_9ARCH3.970e-538.89Uncharacterized protein n=1 Tax=Thaumarchaeota arc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91197contigM-pyrifera_M_contig91197:327..758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816824.244192-CDS-M-pyrifera_M_contig91197:326..7581622816824.244192-CDS-M-pyrifera_M_contig91197:326..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91197 327..758 -
1692278199.937856-CDS-M-pyrifera_M_contig91197:326..7581692278199.937856-CDS-M-pyrifera_M_contig91197:326..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91197 327..758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91197.21134.1prot_M-pyrifera_M_contig91197.21134.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91197 327..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91197.21134.1

>prot_M-pyrifera_M_contig91197.21134.1 ID=prot_M-pyrifera_M_contig91197.21134.1|Name=mRNA_M-pyrifera_M_contig91197.21134.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
NNVNANSGLDVTGAALTTDQAITQTGTDQVTFGGNVDADNGLDVTGTLQS
DDDVILGADATDDVTINGEIQGAVPLILEGGVDDAFETTLSPTEPTQDNA
ITLPDASGEVVLTGATLSNDIAVTTDGSGQLVNALDAQVFTVES
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mRNA from alignment at M-pyrifera_M_contig91197:327..758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91197.21134.1 ID=mRNA_M-pyrifera_M_contig91197.21134.1|Name=mRNA_M-pyrifera_M_contig91197.21134.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig91197:327..758- (Macrocystis pyrifera P11B4 male)
AACAATGTGAATGCGAACAGTGGTTTAGATGTCACCGGCGCAGCATTGAC
GACCGATCAGGCGATTACTCAGACAGGTACTGATCAGGTTACGTTTGGCG
GCAATGTAGATGCAGACAATGGTTTAGATGTTACAGGGACCCTTCAATCC
GATGACGATGTAATCTTGGGAGCCGATGCGACTGATGATGTTACGATCAA
TGGGGAGATCCAGGGAGCAGTACCGTTGATCTTAGAAGGAGGAGTTGATG
ATGCCTTTGAGACGACCTTAAGTCCTACCGAGCCTACGCAAGACAATGCG
ATCACCTTACCCGATGCAAGTGGAGAGGTTGTATTGACAGGCGCTACGTT
GAGCAATGACATAGCGGTTACCACTGATGGAAGTGGCCAGTTGGTTAATG
CATTGGATGCACAAGTATTTACTGTAGAGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91197:327..758-

>mRNA_M-pyrifera_M_contig91197.21134.1 ID=mRNA_M-pyrifera_M_contig91197.21134.1|Name=mRNA_M-pyrifera_M_contig91197.21134.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig91197:327..758- (Macrocystis pyrifera P11B4 male)
AACAATGTGAATGCGAACAGTGGTTTAGATGTCACCGGCGCAGCATTGAC
GACCGATCAGGCGATTACTCAGACAGGTACTGATCAGGTTACGTTTGGCG
GCAATGTAGATGCAGACAATGGTTTAGATGTTACAGGGACCCTTCAATCC
GATGACGATGTAATCTTGGGAGCCGATGCGACTGATGATGTTACGATCAA
TGGGGAGATCCAGGGAGCAGTACCGTTGATCTTAGAAGGAGGAGTTGATG
ATGCCTTTGAGACGACCTTAAGTCCTACCGAGCCTACGCAAGACAATGCG
ATCACCTTACCCGATGCAAGTGGAGAGGTTGTATTGACAGGCGCTACGTT
GAGCAATGACATAGCGGTTACCACTGATGGAAGTGGCCAGTTGGTTAATG
CATTGGATGCACAAGTATTTACTGTAGAGAGTAACAATGTGAATGCGAAC
AGTGGTTTAGATGTCACCGGCGCAGCATTGACGACCGATCAGGCGATTAC
TCAGACAGGTACTGATCAGGTTACGTTTGGCGGCAATGTAGATGCAGACA
ATGGTTTAGATGTTACAGGGACCCTTCAATCCGATGACGATGTAATCTTG
GGAGCCGATGCGACTGATGATGTTACGATCAATGGGGAGATCCAGGGAGC
AGTACCGTTGATCTTAGAAGGAGGAGTTGATGATGCCTTTGAGACGACCT
TAAGTCCTACCGAGCCTACGCAAGACAATGCGATCACCTTACCCGATGCA
AGTGGAGAGGTTGTATTGACAGGCGCTACGTTGAGCAATGACATAGCGGT
TACCACTGATGGAAGTGGCCAGTTGGTTAATGCATTGGATGCACAAGTAT
TTACTGTAGAGAGT
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