mRNA_M-pyrifera_M_contig91121.21127.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91121.21127.1
Unique NamemRNA_M-pyrifera_M_contig91121.21127.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91121.21127.1 vs. uniprot
Match: A0A7V8V1U0_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V1U0_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 7.690e-18
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 MDDTSSSNPFHVLVSSCPGHEKVIAEIYYGDHFVA 105
            MDDTSSSNPFHVLVSSCPGHEKVIAEIYYGDHFVA
Sbjct:    1 MDDTSSSNPFHVLVSSCPGHEKVIAEIYYGDHFVA 35
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91121.21127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V8V1U0_9BACT7.690e-18100.00Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91121contigM-pyrifera_M_contig91121:73..330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.9467835-CDS-M-pyrifera_M_contig91121:72..3301622816823.9467835-CDS-M-pyrifera_M_contig91121:72..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91121 73..330 -
1692278199.7611113-CDS-M-pyrifera_M_contig91121:72..3301692278199.7611113-CDS-M-pyrifera_M_contig91121:72..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91121 73..330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91121.21127.1prot_M-pyrifera_M_contig91121.21127.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91121 73..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91121.21127.1

>prot_M-pyrifera_M_contig91121.21127.1 ID=prot_M-pyrifera_M_contig91121.21127.1|Name=mRNA_M-pyrifera_M_contig91121.21127.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
MDDTSSSNPFHVLVSSCPGHEKVIAEIYYGDHFVALLSHDDDTPLVEMPG
INLDEACISRVVPLKGFQDALSEAYGKVGPACRGS*
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mRNA from alignment at M-pyrifera_M_contig91121:73..330-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91121.21127.1 ID=mRNA_M-pyrifera_M_contig91121.21127.1|Name=mRNA_M-pyrifera_M_contig91121.21127.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig91121:73..330- (Macrocystis pyrifera P11B4 male)
ATGGACGACACTTCGTCGAGCAACCCGTTTCACGTATTGGTGTCCAGTTG
TCCCGGCCACGAAAAGGTAATTGCCGAAATCTACTATGGCGATCACTTTG
TTGCGTTATTGAGTCACGACGACGATACGCCGCTGGTGGAAATGCCAGGC
ATCAATTTGGATGAAGCTTGCATTTCAAGGGTCGTGCCGCTGAAAGGGTT
TCAAGATGCGCTGTCCGAGGCATACGGTAAAGTAGGGCCCGCGTGTCGCG
GGTCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91121:73..330-

>mRNA_M-pyrifera_M_contig91121.21127.1 ID=mRNA_M-pyrifera_M_contig91121.21127.1|Name=mRNA_M-pyrifera_M_contig91121.21127.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig91121:73..330- (Macrocystis pyrifera P11B4 male)
ATGGACGACACTTCGTCGAGCAACCCGTTTCACGTATTGGTGTCCAGTTG
TCCCGGCCACGAAAAGGTAATTGCCGAAATCTACTATGGCGATCACTTTG
TTGCGTTATTGAGTCACGACGACGATACGCCGCTGGTGGAAATGCCAGGC
ATCAATTTGGATGAAGCTTGCATTTCAAGGGTCGTGCCGCTGAAAGGGTT
TCAAGATGCGCTGTCCGAGGCATACGGTAAAGTAGGGCCCGCGTGTCGCG
GGTCATAAATGGACGACACTTCGTCGAGCAACCCGTTTCACGTATTGGTG
TCCAGTTGTCCCGGCCACGAAAAGGTAATTGCCGAAATCTACTATGGCGA
TCACTTTGTTGCGTTATTGAGTCACGACGACGATACGCCGCTGGTGGAAA
TGCCAGGCATCAATTTGGATGAAGCTTGCATTTCAAGGGTCGTGCCGCTG
AAAGGGTTTCAAGATGCGCTGTCCGAGGCATACGGTAAAGTAGGGCCCGC
GTGTCGCGGGTCATAA
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