mRNA_M-pyrifera_M_contig91116.21123.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91116.21123.1
Unique NamemRNA_M-pyrifera_M_contig91116.21123.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: UPI00189A89E7 (cell cycle checkpoint protein RAD17 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189A89E7)

HSP 1 Score: 112 bits (279), Expect = 9.910e-26
Identity = 72/185 (38.92%), Postives = 105/185 (56.76%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPS-------SQRYRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            +G +D S  LFRALGKI + KR       ++P A  ET+S   PP        S  +R+ L  NPE V+    +S EVF+ +LH+NYL FF D++D   A++Y+SDAD L+A    +++    +G Y SSVA+RGLL+SN   V   F+P++KP     S   +DN     +LF +  + P  +Q
Sbjct:  212 VGGKDASLFLFRALGKILHCKR-------ENPEAADETTS---PPEPGLSCHLSHHHREPLLINPELVVERSQMSAEVFSLYLHQNYLDFFSDMEDVGRASEYLSDADLLSADWTSRSI----LGQYGSSVATRGLLHSNSHQVSSAFRPLHKPSWFLVSRKHRDNCQAAQSLFRSFCLTPVTLQ 382          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: A0A3Q4AZM9_MOLML (RAD17 checkpoint clamp loader component n=2 Tax=Mola mola TaxID=94237 RepID=A0A3Q4AZM9_MOLML)

HSP 1 Score: 112 bits (279), Expect = 2.060e-25
Identity = 71/178 (39.89%), Postives = 101/178 (56.74%), Query Frame = 1
Query:    7 GSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPS-SQRYRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            G +D S  LFRALGKI + KR         P AG   S   +PP  S  YR  L  NPE V+   H+S E F  +LH+NYL FF +++D   A++Y+SDAD L+A      M+   +G Y SSVA+RGLL+SN   V   F+P++KP  +  + + ++N     +LF +  M P ++Q
Sbjct:  378 GGKDASLFLFRALGKILHCKR--------DPEAGECASGPGLPPHLSHHYRNMLLVNPELVVERSHMSGEFFILYLHQNYLDFFSEVEDVDHASEYLSDADLLSADW----MNRSTMGDYGSSVATRGLLFSNSQQVSVGFRPLHKPNWLLVNKNHKENCLAAQSLFRSFCMMPVSLQ 543          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: A0A3B5KL10_TAKRU (AAA domain-containing protein n=6 Tax=Takifugu TaxID=31032 RepID=A0A3B5KL10_TAKRU)

HSP 1 Score: 111 bits (278), Expect = 2.650e-25
Identity = 71/179 (39.66%), Postives = 99/179 (55.31%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPSSQRYRKD-LAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            IG +D S  LFRALGKI + KR      H SP A        +P     +++D L   PE V+   H+S EVF  +LH+NYL FF ++DD A A+ Y SDAD LAA      M+   +  Y SSVA+RG+LYSN       F+P+YKP  +  + + Q+N     +LF +  + P ++Q
Sbjct:  349 IGGKDASLFLFRALGKILHCKR----GNHGSPEAAQCAPGPALPSHLAHHQRDPLLITPEMVVEHSHMSGEVFNLYLHQNYLDFFSEVDDVAEASKYQSDADLLAANW----MTRSTMRDYGSSVATRGILYSNTRHTSVGFRPLYKPNWLLVNKNHQENCLAAQSLFGSFCLTPVSLQ 519          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: A0A2I4D1H8_9TELE (cell cycle checkpoint protein RAD17 n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4D1H8_9TELE)

HSP 1 Score: 110 bits (276), Expect = 5.130e-25
Identity = 73/182 (40.11%), Postives = 103/182 (56.59%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPSS----QRYRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            IG +D S  LFRALGKI Y KR        +P A  ET+S   P  S      +R+ L  NPE V+    +S EVF+ +LH+NYL FF +I+D   A++Y+SDAD L+A      ++   +  Y SSVA+RGLL+SN  PV   F+P++KP     S   +DN     +LF +  + P ++Q
Sbjct:  366 IGGKDASLFLFRALGKILYCKR-------GTPEAADETTSCPGPALSCHLSHYHREPLLINPELVMERSQMSAEVFSLYLHQNYLDFFTEIEDVDRASEYLSDADLLSADW----INRSILQQYGSSVATRGLLHSNSHPVSSGFRPLHKPSWFLVSRKHRDNCQAAQSLFRSFCLTPVSLQ 536          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: UPI0018ACD965 (cell cycle checkpoint protein RAD17 isoform X1 n=3 Tax=Kryptolebias marmoratus TaxID=37003 RepID=UPI0018ACD965)

HSP 1 Score: 109 bits (272), Expect = 1.780e-24
Identity = 73/185 (39.46%), Postives = 102/185 (55.14%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPS-------SQRYRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            IG +D S  LFRALGKI ++KR         P A  ET+    PP        S  +R+ L  NPE VL    +S EVF+ +LH+NYL FF D++D   A++Y+SDAD L+A    +++    +G Y SSV SRGLL+SN   V   F+P++KP     S   +DN      LF +  + P ++Q
Sbjct:  367 IGGKDASLFLFRALGKILHSKRR-------DPKAANETTG---PPGPGLSFHLSHHHREPLLINPELVLERSQMSAEVFSLYLHQNYLDFFCDMEDVDRASEYLSDADLLSADWTSRSI----LGEYGSSVVSRGLLHSNSHQVSSGFRPLHKPSWFLVSRKHRDNCQAAQCLFRSFCLTPVSLQ 537          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: UPI00145B80FC (cell cycle checkpoint protein RAD17 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145B80FC)

HSP 1 Score: 108 bits (270), Expect = 3.360e-24
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPS-SQRYRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            IG +D S  LFRALGKI Y KR +H     S     E     +PP  SQ +R+ L  +PE V+   H+  ++F+ +LH+NYL FF +I+D   A++Y+SDAD L+A    +++    +  Y SSVA+RGLL+SN       F+P++KP  +      + N     TLF +  + P  +Q
Sbjct:  369 IGGKDASLFLFRALGKILYCKRAVH---DGSEAVSSELQGGSLPPHLSQHHREPLLEDPEMVVERSHMPSDMFSLYLHQNYLDFFCEIEDVERASEYLSDADLLSANWTTRSL----LSDYSSSVATRGLLHSNFQQATMGFRPLHKPHWLHVQKKYRGNCLAAQTLFRSFCLTPVALQ 540          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: Q4SDG1_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SDG1_TETNG)

HSP 1 Score: 107 bits (268), Expect = 7.380e-24
Identity = 68/179 (37.99%), Postives = 100/179 (55.87%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPSSQRYRKD-LAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            IG +D +  LFRALGKI + KR       + P AG     + +P     + +D L  +PE V+   H+S EVF  +LH+NYL FF ++DD A A+ Y+SDAD LAA      M+   +  Y SSVA+RG+LYSN       F+P++KP  +  +   Q+N     +LF +  + P ++Q
Sbjct:  304 IGGKDATLFLFRALGKILHCKR----GSPEGPEAGQCAPEAALPSHLAHHHRDPLLVSPEMVVEHSHMSGEVFNLYLHQNYLDFFSEVDDVAQASKYLSDADLLAACW----MTRSVMRDYGSSVATRGILYSNTRQTSVGFRPLHKPNWLLVNRTHQENCLAAQSLFGSFCLTPVSLQ 474          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: UPI000443DB72 (cell cycle checkpoint protein RAD17-like isoform X3 n=1 Tax=Poecilia formosa TaxID=48698 RepID=UPI000443DB72)

HSP 1 Score: 103 bits (257), Expect = 2.430e-23
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVA-GLETSSSLIPPSSQRYRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            IG +D+S+ LFRALGKI + KR     P++S  A GL     L+    Q  R+ L   PE V+     S E F+  LH+NYL FF DI+D   A++Y+SDAD LA       M    +G Y SSVA+RGL++SN   +   F+P++KP     +   QDN     +LF +  + P ++Q
Sbjct:   94 IGGKDVSFFLFRALGKILHCKRGNGDCPNESKGASGLVLPFHLL----QHRREVLLVQPELVVERSETSGEFFSLCLHQNYLDFFSDIEDVDRASEYLSDADLLAGNW----MIRHTIGDYGSSVATRGLIHSNSCQLPVGFRPLHKPSWCLVNKKHQDNCVAAQSLFRSFCLTPVSLQ 264          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: A0A1A8LU19_9TELE (RAD17 homolog n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8LU19_9TELE)

HSP 1 Score: 103 bits (257), Expect = 3.230e-23
Identity = 68/174 (39.08%), Postives = 95/174 (54.60%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPSSQRYRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPP 525
            IG +D S  LFRALGKI + KR       D+ V        L P   Q +R  L   PE V+   H+S E+F+ +LH+NYL FF D++D   A+ Y+SDAD L A    +++  P    Y SSVASRGLL+S+   V   F+P++KP     +   +DN     +LF +  +PP
Sbjct:   88 IGGKDASLFLFRALGKILHCKR----GKQDASVP----EPGLPPHLLQHHRHTLLVTPELVVERSHMSGELFSLYLHQNYLDFFSDLEDVDRASQYLSDADLLTADWTSRSLLEP----YGSSVASRGLLHSHSHQVSSGFRPLHKPSWFLVNKKYRDNCLAAQSLFRSFGLPP 249          
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Match: UPI001E8DABAE (cell cycle checkpoint protein RAD17 isoform X2 n=1 Tax=Micropterus dolomieu TaxID=147949 RepID=UPI001E8DABAE)

HSP 1 Score: 105 bits (262), Expect = 3.820e-23
Identity = 66/178 (37.08%), Postives = 99/178 (55.62%), Query Frame = 1
Query:    4 IGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPSSQRYRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISDADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFLIKNSNDRQDNASVLTTLFVTHSMPPPNVQ 537
            IG +D S  LFRALGKI + KR  H     +P  GL +  S        +R+ L  +PE V+   H+S E F  +LH+NYL FF +++D   A++Y+SDAD L A    ++     +  Y SSVA+RGLLYSN   V   F+P++KP  +  +   ++N     +LF +  + P ++Q
Sbjct:  371 IGGKDASLFLFRALGKILHCKRGNHEGAECAPGLGLPSHLS------HHHRETLLVDPEVVVERSHMSGEFFNLYLHQNYLDFFSEVEDVERASEYLSDADLLTADWTCRST----MEDYGSSVATRGLLYSNAQHVSVGFRPLHKPNWLLVNKKHRENCLAAQSLFRSFCLTPVSLQ 538          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91116.21123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00189A89E79.910e-2638.92cell cycle checkpoint protein RAD17 n=1 Tax=Nemato... [more]
A0A3Q4AZM9_MOLML2.060e-2539.89RAD17 checkpoint clamp loader component n=2 Tax=Mo... [more]
A0A3B5KL10_TAKRU2.650e-2539.66AAA domain-containing protein n=6 Tax=Takifugu Tax... [more]
A0A2I4D1H8_9TELE5.130e-2540.11cell cycle checkpoint protein RAD17 n=1 Tax=Austro... [more]
UPI0018ACD9651.780e-2439.46cell cycle checkpoint protein RAD17 isoform X1 n=3... [more]
UPI00145B80FC3.360e-2437.43cell cycle checkpoint protein RAD17 n=1 Tax=Periop... [more]
Q4SDG1_TETNG7.380e-2437.99(spotted green pufferfish) hypothetical protein n=... [more]
UPI000443DB722.430e-2339.11cell cycle checkpoint protein RAD17-like isoform X... [more]
A0A1A8LU19_9TELE3.230e-2339.08RAD17 homolog n=1 Tax=Nothobranchius pienaari TaxI... [more]
UPI001E8DABAE3.820e-2337.08cell cycle checkpoint protein RAD17 isoform X2 n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91116contigM-pyrifera_M_contig91116:84..636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score114.8
Seed ortholog evalue4.2e-23
Seed eggNOG ortholog31033.ENSTRUP00000004947
Preferred nameRAD17
KEGG koko:K06662
KEGG Pathwayko04111,ko04113,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0010972,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031974,GO:0031981,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051174,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:2000112,GO:2000113
EggNOG free text desc.RAD17 checkpoint clamp loader component
EggNOG OGs39UQ0@33154,3BB7E@33208,3D1E3@33213,47Z27@7711,48X3B@7742,4A26F@7898,COG0470@1,KOG1970@2759
COG Functional cat.DL
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size537
Cds size537
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.7574134-CDS-M-pyrifera_M_contig91116:83..1501622816823.7574134-CDS-M-pyrifera_M_contig91116:83..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91116 84..150 +
1692278199.6576436-CDS-M-pyrifera_M_contig91116:83..1501692278199.6576436-CDS-M-pyrifera_M_contig91116:83..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91116 84..150 +
1622816823.7756414-CDS-M-pyrifera_M_contig91116:166..6361622816823.7756414-CDS-M-pyrifera_M_contig91116:166..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91116 167..636 +
1692278199.6718595-CDS-M-pyrifera_M_contig91116:166..6361692278199.6718595-CDS-M-pyrifera_M_contig91116:166..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91116 167..636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91116.21123.1prot_M-pyrifera_M_contig91116.21123.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91116 84..636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91116.21123.1

>prot_M-pyrifera_M_contig91116.21123.1 ID=prot_M-pyrifera_M_contig91116.21123.1|Name=mRNA_M-pyrifera_M_contig91116.21123.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
MIGSRDMSYNLFRALGKICYNKRLMHAWPHDSPVAGLETSSSLIPPSSQR
YRKDLAFNPEKVLSLVHISDEVFTAFLHENYLRFFRDIDDAASAADYISD
ADTLAAGLGYQAMSSPAVGSYVSSVASRGLLYSNRLPVERKFQPMYKPFL
IKNSNDRQDNASVLTTLFVTHSMPPPNVQ
back to top

mRNA from alignment at M-pyrifera_M_contig91116:84..636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91116.21123.1 ID=mRNA_M-pyrifera_M_contig91116.21123.1|Name=mRNA_M-pyrifera_M_contig91116.21123.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=553bp|location=Sequence derived from alignment at M-pyrifera_M_contig91116:84..636+ (Macrocystis pyrifera P11B4 male)
ATGATTGGTTCGAGAGACATGTCCTACAATCTCTTCCGGGCGCTGGGGAA GATCTGTTATAACAAGCGTAAGCGCCTCCCCAGGCTTGATGCATGCATGG CCCCATGACTCACCGGTGGCAGGCCTGGAGACCTCCTCCTCCTTGATTCC GCCCTCCTCCCAAAGGTACCGCAAGGACCTTGCCTTCAACCCTGAGAAGG TACTCTCCCTCGTTCATATTAGCGATGAGGTCTTCACAGCCTTCCTGCAC GAGAACTACCTCCGTTTCTTCCGCGACATCGACGACGCCGCCAGTGCTGC CGACTACATCAGCGACGCCGACACACTGGCTGCTGGCCTTGGCTACCAGG CAATGAGCAGTCCTGCTGTGGGGTCGTACGTGAGCTCCGTCGCCAGCAGA GGCCTCTTGTACAGCAACCGCCTCCCGGTCGAACGGAAGTTCCAGCCGAT GTACAAGCCCTTCCTCATCAAGAACTCCAACGACCGCCAGGACAACGCAT CCGTCCTCACAACCCTCTTTGTCACCCACAGTATGCCCCCTCCGAACGTC CAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91116:84..636+

>mRNA_M-pyrifera_M_contig91116.21123.1 ID=mRNA_M-pyrifera_M_contig91116.21123.1|Name=mRNA_M-pyrifera_M_contig91116.21123.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig91116:84..636+ (Macrocystis pyrifera P11B4 male)
ATGATTGGTTCGAGAGACATGTCCTACAATCTCTTCCGGGCGCTGGGGAA
GATCTGTTATAACAAGCATGATTGGTTCGAGAGACATGTCCTACAATCTC
TTCCGGGCGCTGGGGAAGATCTGTTATAACAAGCGCTTGATGCATGCATG
GCCCCATGACTCACCGGTGGCAGGCCTGGAGACCTCCTCCTCCTTGATTC
CGCCCTCCTCCCAAAGGTACCGCAAGGACCTTGCCTTCAACCCTGAGAAG
GTACTCTCCCTCGTTCATATTAGCGATGAGGTCTTCACAGCCTTCCTGCA
CGAGAACTACCTCCGTTTCTTCCGCGACATCGACGACGCCGCCAGTGCTG
CCGACTACATCAGCGACGCCGACACACTGGCTGCTGGCCTTGGCTACCAG
GCAATGAGCAGTCCTGCTGTGGGGTCGTACGTGAGCTCCGTCGCCAGCAG
AGGCCTCTTGTACAGCAACCGCCTCCCGGTCGAACGGAAGTTCCAGCCGA
TGTACAAGCCCTTCCTCATCAAGAACTCCAACGACCGCCAGGACAACGCA
TCCGTCCTCACAACCCTCTTTGTCACCCACAGTATGCCCCCTCCGAACGT
CCAGGCTTGATGCATGCATGGCCCCATGACTCACCGGTGGCAGGCCTGGA
GACCTCCTCCTCCTTGATTCCGCCCTCCTCCCAAAGGTACCGCAAGGACC
TTGCCTTCAACCCTGAGAAGGTACTCTCCCTCGTTCATATTAGCGATGAG
GTCTTCACAGCCTTCCTGCACGAGAACTACCTCCGTTTCTTCCGCGACAT
CGACGACGCCGCCAGTGCTGCCGACTACATCAGCGACGCCGACACACTGG
CTGCTGGCCTTGGCTACCAGGCAATGAGCAGTCCTGCTGTGGGGTCGTAC
GTGAGCTCCGTCGCCAGCAGAGGCCTCTTGTACAGCAACCGCCTCCCGGT
CGAACGGAAGTTCCAGCCGATGTACAAGCCCTTCCTCATCAAGAACTCCA
ACGACCGCCAGGACAACGCATCCGTCCTCACAACCCTCTTTGTCACCCAC
AGTATGCCCCCTCCGAACGTCCAG
back to top