mRNA_M-pyrifera_M_contig91106.21118.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91106.21118.1
Unique NamemRNA_M-pyrifera_M_contig91106.21118.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91106.21118.1 vs. uniprot
Match: L8H4X1_ACACA (Lipase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H4X1_ACACA)

HSP 1 Score: 80.9 bits (198), Expect = 9.160e-15
Identity = 58/162 (35.80%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:    7 DGEMVVRFFGMKAEDDQF-MSGNILVHEVQDPPVGRPRSRSRGRAGAAELASYGLAIGRSVLGKALVVHAGFWKTFQSLNRCCIERYGVDLPARIMSQWQQQLKEHA--GVQRRRLVITGHSMGGAFACFTAYCLHTRYRESHPELVDGLLLLLIGSPKFAR 483
            DGE+VVRFFGMK  D    ++ N+   E++   VG P   +  + G++ L      + ++++G  + VH GFW+ ++++++ C +++G DL  RI+    Q+L E A  G   +R+V TGHSMG A A   A+ L  RY    P+L   L L+  G+P++AR
Sbjct:  510 DGELVVRFFGMKDNDMILKVAANLSRAEME---VG-PWEAAYFKRGSSLLGIAKGFVPQNMIG-GMKVHGGFWQMYKAISKGCWKQHGCDLVERIV----QRLGEAAMAGDSNKRIVFTGHSMGAALAAMAAFQLIHRY----PQLRRRLFLIQFGAPRYAR 658
[Close]
BLAST of mRNA_M-pyrifera_M_contig91106.21118.1 vs. uniprot
Match: L8HKH4_ACACA (Lipase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HKH4_ACACA)

HSP 1 Score: 65.5 bits (158), Expect = 2.110e-9
Identity = 55/166 (33.13%), Postives = 75/166 (45.18%), Query Frame = 1 
Query:    1 MRDGEMVVRFFGMKAEDDQFMSGNILVHEVQDPPV----GRPRSRSRGRAGAAELASYGLAIGRSVLGKALVVHAGFWKTFQSLNRCCIERYGVDLPARIMSQWQQQLKEHAGV-QRRRLVITGHSMGGAFACFTAYCLHTRYRESHPELVDGLLLLLIGSPKFAR 483
            M+DGE+VVRFFGMK ED        ++ E  D       G+       + G +E              K  +  A    ++Q     C+  +GVDL   I+++        AG  Q +R+V TGHSMG A A   AY    RY    P     L L+L+GSP+FAR
Sbjct:  652 MQDGELVVRFFGMKDEDSSLHVAMKVIQETIDTGPFFLKGKKNKIVSAKGGGSETR------------KMKLTPASTTSSWQ-----CLVEHGVDLVDHIVAR--------AGSDQTKRVVFTGHSMGAAIAAMVAYQAVVRY----PVFRMRLYLVLLGSPRFAR 788
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91106.21118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
L8H4X1_ACACA9.160e-1535.80Lipase n=1 Tax=Acanthamoeba castellanii str. Neff ... [more]
L8HKH4_ACACA2.110e-933.13Lipase n=1 Tax=Acanthamoeba castellanii str. Neff ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91106contigM-pyrifera_M_contig91106:301..783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.570921-CDS-M-pyrifera_M_contig91106:300..7831622816823.570921-CDS-M-pyrifera_M_contig91106:300..783Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91106 301..783 +
1692278199.551911-CDS-M-pyrifera_M_contig91106:300..7831692278199.551911-CDS-M-pyrifera_M_contig91106:300..783Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91106 301..783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91106.21118.1prot_M-pyrifera_M_contig91106.21118.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91106 301..783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91106.21118.1

>prot_M-pyrifera_M_contig91106.21118.1 ID=prot_M-pyrifera_M_contig91106.21118.1|Name=mRNA_M-pyrifera_M_contig91106.21118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MRDGEMVVRFFGMKAEDDQFMSGNILVHEVQDPPVGRPRSRSRGRAGAAE
LASYGLAIGRSVLGKALVVHAGFWKTFQSLNRCCIERYGVDLPARIMSQW
QQQLKEHAGVQRRRLVITGHSMGGAFACFTAYCLHTRYRESHPELVDGLL
LLLIGSPKFAR
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mRNA from alignment at M-pyrifera_M_contig91106:301..783+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91106.21118.1 ID=mRNA_M-pyrifera_M_contig91106.21118.1|Name=mRNA_M-pyrifera_M_contig91106.21118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig91106:301..783+ (Macrocystis pyrifera P11B4 male)
ATGCGGGACGGAGAGATGGTGGTGCGATTCTTCGGCATGAAGGCGGAGGA
TGACCAGTTCATGAGCGGAAACATCCTGGTGCATGAGGTACAGGATCCAC
CGGTTGGACGGCCTCGAAGCCGCAGCAGAGGAAGAGCTGGTGCCGCCGAG
CTCGCCAGCTATGGCCTCGCTATTGGGAGAAGTGTGCTCGGAAAGGCACT
CGTGGTGCATGCCGGCTTCTGGAAGACATTCCAGTCGCTCAACAGATGCT
GCATTGAGAGGTATGGCGTCGACCTCCCTGCTCGCATCATGAGCCAATGG
CAGCAGCAGCTCAAGGAGCATGCAGGTGTGCAGAGGCGTCGCCTCGTCAT
CACAGGGCACAGCATGGGTGGAGCGTTTGCCTGCTTTACCGCCTACTGCC
TTCACACTCGCTACCGAGAGAGCCATCCAGAGCTAGTGGACGGCCTTTTG
CTCCTGCTCATTGGCTCCCCCAAGTTTGCTCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91106:301..783+

>mRNA_M-pyrifera_M_contig91106.21118.1 ID=mRNA_M-pyrifera_M_contig91106.21118.1|Name=mRNA_M-pyrifera_M_contig91106.21118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig91106:301..783+ (Macrocystis pyrifera P11B4 male)
ATGCGGGACGGAGAGATGGTGGTGCGATTCTTCGGCATGAAGGCGGAGGA
TGACCAGTTCATGAGCGGAAACATCCTGGTGCATGAGGTACAGGATCCAC
CGGTTGGACGGCCTCGAAGCCGCAGCAGAGGAAGAGCTGGTGCCGCCGAG
CTCGCCAGCTATGGCCTCGCTATTGGGAGAAGTGTGCTCGGAAAGGCACT
CGTGGTGCATGCCGGCTTCTGGAAGACATTCCAGTCGCTCAACAGATGCT
GCATTGAGAGGTATGGCGTCGACCTCCCTGCTCGCATCATGAGCCAATGG
CAGCAGCAGCTCAAGGAGCATGCAGGTGTGCAGAGGCGTCGCCTCGTCAT
CACAGGGCACAGCATGGGTGGAGCGTTTGCCTGCTTTACCGCCTACTGCC
TTCACACTCGCTACCGAGAGAGCCATCCAGAGCTAGTGGACGGCCTTTTG
CTCCTGCTCATTGGCTCCCCCAAGTTTGCTCGGATGCGGGACGGAGAGAT
GGTGGTGCGATTCTTCGGCATGAAGGCGGAGGATGACCAGTTCATGAGCG
GAAACATCCTGGTGCATGAGGTACAGGATCCACCGGTTGGACGGCCTCGA
AGCCGCAGCAGAGGAAGAGCTGGTGCCGCCGAGCTCGCCAGCTATGGCCT
CGCTATTGGGAGAAGTGTGCTCGGAAAGGCACTCGTGGTGCATGCCGGCT
TCTGGAAGACATTCCAGTCGCTCAACAGATGCTGCATTGAGAGGTATGGC
GTCGACCTCCCTGCTCGCATCATGAGCCAATGGCAGCAGCAGCTCAAGGA
GCATGCAGGTGTGCAGAGGCGTCGCCTCGTCATCACAGGGCACAGCATGG
GTGGAGCGTTTGCCTGCTTTACCGCCTACTGCCTTCACACTCGCTACCGA
GAGAGCCATCCAGAGCTAGTGGACGGCCTTTTGCTCCTGCTCATTGGCTC
CCCCAAGTTTGCTCGG
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