mRNA_M-pyrifera_M_contig9106.21112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9106.21112.1
Unique NamemRNA_M-pyrifera_M_contig9106.21112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9106.21112.1 vs. uniprot
Match: D8LS32_ECTSI (DUF667 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS32_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 7.600e-17
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 MFKSAYQDGDCVEIFSPAGKNPAVEWKLTNKVARLYDKGIKG 126
            MF+SAYQDGDCVE+FSPAGKNPA +WKL+ KV R+Y+KG+KG
Sbjct:    1 MFQSAYQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVKG 42
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BLAST of mRNA_M-pyrifera_M_contig9106.21112.1 vs. uniprot
Match: A0A662WTC2_9STRA (DUF667 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTC2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.080e-7
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 MFKSAYQDGDCVEIFSPAGKNPAVEWKLTNKVARLYDKGIKG 126
            M  S +Q GD VE+ S  GK PA  WKL  K+A+ +DKGIKG
Sbjct: 1373 MASSYFQGGDFVELLSAQGKAPAAAWKLQGKIAKSFDKGIKG 1414
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9106.21112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS32_ECTSI7.600e-1776.19DUF667 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A662WTC2_9STRA6.080e-754.76DUF667 domain-containing protein n=2 Tax=Nothophyt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9106contigM-pyrifera_M_contig9106:9562..9690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue9.5e-14
Seed eggNOG ortholog2880.D8LS32
KEGG koko:K06236
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.regulation of cilium movement involved in cell motility
EggNOG OGsKOG3213@1,KOG3213@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko04516
Exons1
Model size129
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.2699318-CDS-M-pyrifera_M_contig9106:9561..96901622816823.2699318-CDS-M-pyrifera_M_contig9106:9561..9690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9106 9562..9690 -
1692278199.3736413-CDS-M-pyrifera_M_contig9106:9561..96901692278199.3736413-CDS-M-pyrifera_M_contig9106:9561..9690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9106 9562..9690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9106.21112.1prot_M-pyrifera_M_contig9106.21112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9106 9562..9690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9106.21112.1

>prot_M-pyrifera_M_contig9106.21112.1 ID=prot_M-pyrifera_M_contig9106.21112.1|Name=mRNA_M-pyrifera_M_contig9106.21112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
MFKSAYQDGDCVEIFSPAGKNPAVEWKLTNKVARLYDKGIKG*
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mRNA from alignment at M-pyrifera_M_contig9106:9562..9690-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9106.21112.1 ID=mRNA_M-pyrifera_M_contig9106.21112.1|Name=mRNA_M-pyrifera_M_contig9106.21112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig9106:9562..9690- (Macrocystis pyrifera P11B4 male)
ATGTTCAAGTCGGCGTATCAGGATGGCGACTGCGTCGAGATATTCTCGCC
AGCGGGCAAAAACCCCGCCGTGGAATGGAAGCTCACGAACAAGGTGGCCC
GCCTTTACGACAAGGGGATCAAAGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9106:9562..9690-

>mRNA_M-pyrifera_M_contig9106.21112.1 ID=mRNA_M-pyrifera_M_contig9106.21112.1|Name=mRNA_M-pyrifera_M_contig9106.21112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig9106:9562..9690- (Macrocystis pyrifera P11B4 male)
ATGTTCAAGTCGGCGTATCAGGATGGCGACTGCGTCGAGATATTCTCGCC
AGCGGGCAAAAACCCCGCCGTGGAATGGAAGCTCACGAACAAGGTGGCCC
GCCTTTACGACAAGGGGATCAAAGGGTGAATGTTCAAGTCGGCGTATCAG
GATGGCGACTGCGTCGAGATATTCTCGCCAGCGGGCAAAAACCCCGCCGT
GGAATGGAAGCTCACGAACAAGGTGGCCCGCCTTTACGACAAGGGGATCA
AAGGGTGA
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