mRNA_M-pyrifera_M_contig91050.21108.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91050.21108.1
Unique NamemRNA_M-pyrifera_M_contig91050.21108.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A2E7KCC1_9PLAN (General stress protein CsbD n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KCC1_9PLAN)

HSP 1 Score: 271 bits (693), Expect = 1.260e-90
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1
Query:    1 HLRHFEFRILFQENNSAEFDYNSKERDMVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            HLRHFEFRILFQENNSAEFDYNSKERDMVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR
Sbjct:   13 HLRHFEFRILFQENNSAEFDYNSKERDMVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 188          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A6I6A8R4_9PLAN (DUF883 family protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A8R4_9PLAN)

HSP 1 Score: 208 bits (530), Expect = 2.230e-66
Identity = 141/149 (94.63%), Postives = 142/149 (95.30%), Query Frame = 1
Query:   82 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAA+ATEKLGENFE TV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    LRKNPVESVAVAFGTGLIAGVIVSL WRR
Sbjct:    1 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAAQATEKLGENFEKTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEQTLRKNPVESVAVAFGTGLIAGVIVSLAWRR 149          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A355GAM5_9PLAN (General stress protein CsbD n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GAM5_9PLAN)

HSP 1 Score: 150 bits (379), Expect = 1.930e-43
Identity = 107/149 (71.81%), Postives = 126/149 (84.56%), Query Frame = 1
Query:   82 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            M TREE+RGHWNE+RGRIE+ W+QL+  DLDG+EG+TDQLVGKIQQKTG+ S +IR+ELD I++++S+SA+    K+G+ F   V      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX RK+P ESVAVAFGTGLIAGVIVSLVWRR
Sbjct:    1 MTTREELRGHWNEIRGRIEERWSQLNSSDLDGLEGKTDQLVGKIQQKTGETSKDIRKELDSIIENLSQSASSMAGKMGDTFNEAVKNSKEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKHPAESVAVAFGTGLIAGVIVSLVWRR 149          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A517VB68_9PLAN (CsbD domain-containing protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VB68_9PLAN)

HSP 1 Score: 142 bits (359), Expect = 2.060e-40
Identity = 108/149 (72.48%), Postives = 125/149 (83.89%), Query Frame = 1
Query:   82 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            M TREE+RGHWNE+RGRIE+ W+QLS  DLDG+EG+TDQLVGKIQQKTG+  ++I++ELD +V+ +S SA+    K+GE F   V   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +P ESVAVAFGTGLIAGVIVSLVWRR
Sbjct:    1 MTTREELRGHWNEIRGRIEEKWSQLSSSDLDGLEGKTDQLVGKIQQKTGETRSDIQRELDSMVESLSHSASSMAGKVGETFNEAVKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPAESVAVAFGTGLIAGVIVSLVWRR 149          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A350KIY1_9PLAN (General stress protein CsbD n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A350KIY1_9PLAN)

HSP 1 Score: 129 bits (323), Expect = 5.750e-35
Identity = 92/149 (61.74%), Postives = 106/149 (71.14%), Query Frame = 1
Query:   82 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            M TREE+RGHWNE+RGRIE+ W+QL+  DLDG+EG+TDQLVGKIQQKTG+   +I++ELD +V+  S             F   V             XXXXXXXXXXXXXXXXXXXXXX  K+P ESVAVAFGTGLIAGVIVSL WRR
Sbjct:    1 MTTREELRGHWNEIRGRIEERWSQLNSSDLDGLEGKTDQLVGKIQQKTGETKRDIQRELDSMVESFSXXXXXXXXXXXXTFNEAVKNSKEQFAHASDAXXXXXXXXXXXXXXXXXXXXXXXXKHPAESVAVAFGTGLIAGVIVSLAWRR 149          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A518CLI1_9PLAN (CsbD domain-containing protein n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CLI1_9PLAN)

HSP 1 Score: 120 bits (301), Expect = 1.140e-31
Identity = 86/151 (56.95%), Postives = 106/151 (70.20%), Query Frame = 1
Query:   82 MVTREEIR--GHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            M T +E++  G+WNELRGRIE+HW+QL+  DLD +EG  DQ+VGKIQQKTG+ S +I  EL+ +++ +  SAA  TEKLG+  +N   XXXXXXXXXXXXXXXX                  +RK+P ESVAVAFGTGLIAGVIVSL  RR
Sbjct:    1 MTTSQELKMKGNWNELRGRIEEHWSQLTSSDLDNLEGRKDQIVGKIQQKTGETSQKIEAELNHLLETVCNSAASTTEKLGQTVQNAQEXXXXXXXXXXXXXXXXNDSIQQGYQQAEET----VRKHPTESVAVAFGTGLIAGVIVSLALRR 147          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A518I9I1_9PLAN (CsbD domain-containing protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I9I1_9PLAN)

HSP 1 Score: 116 bits (291), Expect = 3.880e-30
Identity = 82/149 (55.03%), Postives = 97/149 (65.10%), Query Frame = 1
Query:   82 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            M TREE+RGHWNE+RGRIE+ W +L+  DLD VEG+T                 I  ELD IV ++S+SA+  +E+ G+N    VN              XXXXXXXXXXXXXXXX    ++KNPVESVAVAFGTGLIAGVIVSLVWRR
Sbjct:    1 MATREELRGHWNEIRGRIEERWGELTSDDLDEVEGKTXXXXXXXXXXXXXTRQTIETELDSIVRNLSQSASSFSEEFGDNIHEAVNKTKQQFSHASDVAKXXXXXXXXXXXXXXXXAEQTVQKNPVESVAVAFGTGLIAGVIVSLVWRR 149          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: UPI00142473B4 (CsbD family protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00142473B4)

HSP 1 Score: 107 bits (268), Expect = 1.010e-26
Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1
Query:   82 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            M+T EE++G+WN+LRG++E+ W+QLS +DLD + G  DQLVG +QQKTGQA   I  EL+ ++D  +++A+   EKLG  +    N                                  ++++P ESVAVAFGTGLIAGV++ L+ RR
Sbjct:    1 MITSEELKGNWNQLRGKVEERWSQLSSNDLDQINGNVDQLVGVLQQKTGQAKQTIEHELNELLDSSAQNASSVAEKLGA-YSKEANEYAAQVAEQARQQYMQMAGGVQEGYNQAGEY---VKQHPAESVAVAFGTGLIAGVMLGLIVRR 145          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A517WX28_9PLAN (CsbD domain-containing protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WX28_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 7.120e-21
Identity = 87/149 (58.39%), Postives = 100/149 (67.11%), Query Frame = 1
Query:   82 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWRR 528
            M TREEI G WNELRGRI++ W QLS +DLD +E                 S +I  EL+ IV+++S+SA+ AT            XXXXXXXXXXXXXXXXXXXXXXXXXXX       +RK+P ESVAVAFGTGLIAGVIVSLVWRR
Sbjct:    1 MTTREEIHGQWNELRGRIQERWGQLSSNDLDELEXXXXXXXXXXXXXXXXTSQKIEAELESIVENLSQSASSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQT----IRKHPAESVAVAFGTGLIAGVIVSLVWRR 145          
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Match: A0A517Z413_9PLAN (CsbD domain-containing protein n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z413_9PLAN)

HSP 1 Score: 92.4 bits (228), Expect = 8.570e-21
Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 1
Query:   82 MVTREEIRGHWNELRGRIEKHWNQLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDD-------MSKSAARATEKLGENFENTVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKNPVESVAVAFGTGLIAGVIVSLVWR 525
            M+TR+E+ G WNE++G++++ W QLS  DL   EG  DQLVG IQQKTG++   I + L+  +DD       ++++A    E+  E ++ TV+                                  +++ PVESVAVAFG G+I GV+V L  R
Sbjct:    1 MITRQELEGQWNEVKGQVKERWGQLSDDDLARAEGNADQLVGVIQQKTGESRRNIEEFLEKAIDDNANTMDQVARTARAYAEQASEKYQETVDQVTDQVGASYAEAEAM------------------VQRKPVESVAVAFGAGIITGVVVGLALR 137          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91050.21108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KCC1_9PLAN1.260e-90100.00General stress protein CsbD n=2 Tax=Gimesia TaxID=... [more]
A0A6I6A8R4_9PLAN2.230e-6694.63DUF883 family protein n=4 Tax=Gimesia TaxID=164945... [more]
A0A355GAM5_9PLAN1.930e-4371.81General stress protein CsbD n=2 Tax=Planctomycetac... [more]
A0A517VB68_9PLAN2.060e-4072.48CsbD domain-containing protein n=1 Tax=Gimesia alg... [more]
A0A350KIY1_9PLAN5.750e-3561.74General stress protein CsbD n=5 Tax=Planctomycetac... [more]
A0A518CLI1_9PLAN1.140e-3156.95CsbD domain-containing protein n=1 Tax=Polystyrene... [more]
A0A518I9I1_9PLAN3.880e-3055.03CsbD domain-containing protein n=1 Tax=Gimesia fum... [more]
UPI00142473B41.010e-2640.27CsbD family protein n=1 Tax=Rubinisphaera sp. JC65... [more]
A0A517WX28_9PLAN7.120e-2158.39CsbD domain-containing protein n=1 Tax=Gimesia aqu... [more]
A0A517Z413_9PLAN8.570e-2134.84CsbD domain-containing protein n=1 Tax=Maioricimon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91050contigM-pyrifera_M_contig91050:253..783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score125.9
Seed ortholog evalue1.8e-26
Seed eggNOG ortholog344747.PM8797T_15641
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the UPF0337 (CsbD) family
EggNOG OGs2J0RH@203682,COG3237@1,COG3237@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size531
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.114726-CDS-M-pyrifera_M_contig91050:252..7831622816823.114726-CDS-M-pyrifera_M_contig91050:252..783Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91050 253..783 -
1692278199.2948039-CDS-M-pyrifera_M_contig91050:252..7831692278199.2948039-CDS-M-pyrifera_M_contig91050:252..783Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91050 253..783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91050.21108.1prot_M-pyrifera_M_contig91050.21108.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91050 253..783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91050.21108.1

>prot_M-pyrifera_M_contig91050.21108.1 ID=prot_M-pyrifera_M_contig91050.21108.1|Name=mRNA_M-pyrifera_M_contig91050.21108.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
HLRHFEFRILFQENNSAEFDYNSKERDMVTREEIRGHWNELRGRIEKHWN
QLSPHDLDGVEGETDQLVGKIQQKTGQASTEIRQELDCIVDDMSKSAARA
TEKLGENFENTVNKTKEQFQHASEAARAQYEHLNESMHKGYQQAEQTLRK
NPVESVAVAFGTGLIAGVIVSLVWRR*
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mRNA from alignment at M-pyrifera_M_contig91050:253..783-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91050.21108.1 ID=mRNA_M-pyrifera_M_contig91050.21108.1|Name=mRNA_M-pyrifera_M_contig91050.21108.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig91050:253..783- (Macrocystis pyrifera P11B4 male)
CACTTGCGACACTTTGAATTCAGGATATTGTTTCAAGAAAACAATTCAGC AGAATTTGATTACAATTCTAAGGAGCGAGATATGGTTACTCGAGAAGAAA TACGCGGTCATTGGAATGAATTGAGAGGTCGGATTGAAAAACACTGGAAT CAACTGAGCCCTCACGATCTGGATGGAGTTGAAGGAGAGACTGATCAGTT GGTGGGAAAAATCCAACAGAAAACCGGACAGGCTTCTACTGAAATCCGAC AGGAGCTGGATTGTATCGTCGACGATATGTCCAAGTCAGCTGCCCGTGCT ACCGAAAAGCTGGGGGAAAACTTTGAGAACACGGTCAATAAAACTAAAGA ACAGTTTCAGCATGCCTCCGAAGCGGCTCGCGCACAATATGAGCACTTAA ATGAATCCATGCACAAAGGGTACCAGCAGGCTGAACAGACGCTGCGAAAG AATCCAGTGGAATCAGTTGCGGTTGCTTTTGGGACTGGCCTGATCGCAGG AGTTATTGTGAGTCTGGTCTGGCGCCGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91050:253..783-

>mRNA_M-pyrifera_M_contig91050.21108.1 ID=mRNA_M-pyrifera_M_contig91050.21108.1|Name=mRNA_M-pyrifera_M_contig91050.21108.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig91050:253..783- (Macrocystis pyrifera P11B4 male)
CACTTGCGACACTTTGAATTCAGGATATTGTTTCAAGAAAACAATTCAGC
AGAATTTGATTACAATTCTAAGGAGCGAGATATGGTTACTCGAGAAGAAA
TACGCGGTCATTGGAATGAATTGAGAGGTCGGATTGAAAAACACTGGAAT
CAACTGAGCCCTCACGATCTGGATGGAGTTGAAGGAGAGACTGATCAGTT
GGTGGGAAAAATCCAACAGAAAACCGGACAGGCTTCTACTGAAATCCGAC
AGGAGCTGGATTGTATCGTCGACGATATGTCCAAGTCAGCTGCCCGTGCT
ACCGAAAAGCTGGGGGAAAACTTTGAGAACACGGTCAATAAAACTAAAGA
ACAGTTTCAGCATGCCTCCGAAGCGGCTCGCGCACAATATGAGCACTTAA
ATGAATCCATGCACAAAGGGTACCAGCAGGCTGAACAGACGCTGCGAAAG
AATCCAGTGGAATCAGTTGCGGTTGCTTTTGGGACTGGCCTGATCGCAGG
AGTTATTGTGAGTCTGGTCTGGCGCCGTTAACACTTGCGACACTTTGAAT
TCAGGATATTGTTTCAAGAAAACAATTCAGCAGAATTTGATTACAATTCT
AAGGAGCGAGATATGGTTACTCGAGAAGAAATACGCGGTCATTGGAATGA
ATTGAGAGGTCGGATTGAAAAACACTGGAATCAACTGAGCCCTCACGATC
TGGATGGAGTTGAAGGAGAGACTGATCAGTTGGTGGGAAAAATCCAACAG
AAAACCGGACAGGCTTCTACTGAAATCCGACAGGAGCTGGATTGTATCGT
CGACGATATGTCCAAGTCAGCTGCCCGTGCTACCGAAAAGCTGGGGGAAA
ACTTTGAGAACACGGTCAATAAAACTAAAGAACAGTTTCAGCATGCCTCC
GAAGCGGCTCGCGCACAATATGAGCACTTAAATGAATCCATGCACAAAGG
GTACCAGCAGGCTGAACAGACGCTGCGAAAGAATCCAGTGGAATCAGTTG
CGGTTGCTTTTGGGACTGGCCTGATCGCAGGAGTTATTGTGAGTCTGGTC
TGGCGCCGTTAA
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