mRNA_M-pyrifera_M_contig91044.21107.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91044.21107.1
Unique NamemRNA_M-pyrifera_M_contig91044.21107.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: A0A835R7R8_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835R7R8_VANPL)

HSP 1 Score: 124 bits (312), Expect = 6.760e-33
Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGS 300
            S+GDGRY ISN KDQ +KLWD+RKM   A+  MP +S+WDYR    W+   RH  +    H  D SL TYRGH V +TLIR YFSPAHSTGQRYIY+GS
Sbjct:   23 SRGDGRYFISNGKDQALKLWDIRKMSSGANCSMPMKSNWDYR----WMEYPRHARNLC--HPHDQSLTTYRGHSVLQTLIRCYFSPAHSTGQRYIYTGS 115          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: A0A835R757_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835R757_VANPL)

HSP 1 Score: 124 bits (312), Expect = 8.880e-32
Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGS 300
            S+GDGRY ISN KDQ +KLWD+RKM   A+  MP +S+WDYR    W+   RH  +    H  D SL TYRGH V +TLIR YFSPAHSTGQRYIY+GS
Sbjct:  128 SRGDGRYFISNGKDQALKLWDIRKMSSGANCSMPMKSNWDYR----WMEYPRHARNLC--HPHDQSLTTYRGHSVLQTLIRCYFSPAHSTGQRYIYTGS 220          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: A0A3B5YUA9_WHEAT (Uncharacterized protein n=3 Tax=Pooideae TaxID=147368 RepID=A0A3B5YUA9_WHEAT)

HSP 1 Score: 123 bits (309), Expect = 3.960e-31
Identity = 63/117 (53.85%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGSCSGKITSTYLCMSWRQPI 354
            S+GDGRYLISN KDQTIKLWDVRKM        P    WDYR    W++   H      +H  D+SL TYRGH V RTLIR YFSP HSTGQRYIY+GS    +    + +SW   I
Sbjct:  154 SRGDGRYLISNCKDQTIKLWDVRKMSATVKGRQPRLYDWDYR----WMTFPSHA--RYYKHPNDLSLATYRGHSVLRTLIRCYFSPMHSTGQRYIYTGSSDDSVHIYDVKLSWHGSI 264          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: M8AS64_TRIUA (LEC14B protein n=4 Tax=Triticinae TaxID=1648030 RepID=M8AS64_TRIUA)

HSP 1 Score: 118 bits (295), Expect = 5.550e-30
Identity = 59/104 (56.73%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGSCSGKI 315
            S+GDGRYLISN KDQTIKLWD+RKM        P    WDYR  + + S  R+      +H  D+SL TYRGH V RTLIR YFSP HSTGQRYIY+GS    +
Sbjct:   50 SRGDGRYLISNCKDQTIKLWDIRKMSATVKGRQPRLYDWDYRW-MSFPSDARYY-----KHPNDLSLATYRGHSVLRTLIRCYFSPMHSTGQRYIYTGSSDDSV 147          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: A0A833QWY8_9POAL (LEC14B protein-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QWY8_9POAL)

HSP 1 Score: 123 bits (308), Expect = 5.620e-30
Identity = 60/99 (60.61%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGS 300
            S+GDGRYLISN KDQTIKLWD+RKM       +P    WDYR  +Y  S  RH+     +H  D SL T+RGH V RTLIR YFSPAHSTGQ+YIY+GS
Sbjct:  300 SRGDGRYLISNGKDQTIKLWDIRKMSSSVKFSIPRAYEWDYRCMVY-PSEARHM-----KHPHDQSLATFRGHSVLRTLIRCYFSPAHSTGQKYIYTGS 392          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: A0A6A4YLR7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YLR7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.870e-30
Identity = 59/107 (55.14%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASAL-MPPRSSWDYRQGIYWVSRERHLFDGS--KEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGSCSGKI 315
            S+ DG Y +SN+KDQT KLWD+RK V+ A    MP +  WDYR+G Y  +     FDG+    H QD S+ TYRGH V +TLIR YFSP HSTGQR+IYSGS  G++
Sbjct:   10 SRDDGYYFLSNAKDQTAKLWDLRKCVDHAGVQHMPRQYDWDYRRGEYPGN-----FDGAVAMPHPQDQSVLTYRGHAVKKTLIRCYFSPMHSTGQRFIYSGSADGEV 111          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: A0A2I0WY29_9ASPA (LEC14B n=4 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WY29_9ASPA)

HSP 1 Score: 119 bits (299), Expect = 8.950e-30
Identity = 60/99 (60.61%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGS 300
            S+GDGRY ISN KDQTIKLWD+RKM        P  S WDYR   Y  S  +HL      H  D S+ TYRGH V RTLIR YFSP+HSTGQRYIY+GS
Sbjct:  136 SRGDGRYFISNGKDQTIKLWDIRKMSSGPKCPRPRISDWDYRWMEY-PSHAKHL-----SHPNDQSVATYRGHSVLRTLIRCYFSPSHSTGQRYIYTGS 228          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: A0A3B5XWQ5_WHEAT (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A3B5XWQ5_WHEAT)

HSP 1 Score: 121 bits (303), Expect = 1.570e-29
Identity = 60/104 (57.69%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGSCSGKI 315
            S+GDGRYLISN KDQTIKLWD+RKM        P    WDYR    W+S   H      +H  D+SL TYRGH V RTLIR YFSP HSTGQRYIY+GS    +
Sbjct:  248 SRGDGRYLISNCKDQTIKLWDIRKMSATVKGRQPRLYDWDYR----WMSFPSHA--RYYKHPNDLSLATYRGHSVLRTLIRCYFSPMHSTGQRYIYTGSSDDSV 345          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: R7WFJ4_AEGTA (Uncharacterized protein n=2 Tax=Aegilops tauschii TaxID=37682 RepID=R7WFJ4_AEGTA)

HSP 1 Score: 120 bits (301), Expect = 1.590e-29
Identity = 60/104 (57.69%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGSCSGKI 315
            S+GDGRYLISN KDQTIKLWDVR+M        P    WDYR    W+S   H      +H  D+SL TYRGH V RTLIR YFSP HSTGQRYIY+GS    +
Sbjct:  182 SRGDGRYLISNCKDQTIKLWDVRRMSATVKGRQPRLYDWDYR----WMSFPSHA--RYYKHPNDLSLATYRGHSVLRTLIRCYFSPMHSTGQRYIYTGSSDDSV 279          
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Match: A0A446IL50_TRITD (Uncharacterized protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446IL50_TRITD)

HSP 1 Score: 113 bits (283), Expect = 3.280e-29
Identity = 57/99 (57.58%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    4 SKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVSRERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGS 300
            S+GDG Y ISN KDQTIKLWD+RK+        P    WDYR   Y  S  R L     +H  D SL T+RGH V RTLIR YFSP HSTGQRYIY+GS
Sbjct:   34 SRGDGHYFISNCKDQTIKLWDIRKLSSATKDCTPKAYEWDYRWMTY-PSEARFL-----KHSYDQSLATFRGHSVLRTLIRCYFSPMHSTGQRYIYTGS 126          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91044.21107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835R7R8_VANPL6.760e-3360.61Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835R757_VANPL8.880e-3260.61Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A3B5YUA9_WHEAT3.960e-3153.85Uncharacterized protein n=3 Tax=Pooideae TaxID=147... [more]
M8AS64_TRIUA5.550e-3056.73LEC14B protein n=4 Tax=Triticinae TaxID=1648030 Re... [more]
A0A833QWY8_9POAL5.620e-3060.61LEC14B protein-like protein n=1 Tax=Carex littleda... [more]
A0A6A4YLR7_9STRA5.870e-3055.14Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2I0WY29_9ASPA8.950e-3060.61LEC14B n=4 Tax=Dendrobium catenatum TaxID=906689 R... [more]
A0A3B5XWQ5_WHEAT1.570e-2957.69Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]
R7WFJ4_AEGTA1.590e-2957.69Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
A0A446IL50_TRITD3.280e-2957.58Uncharacterized protein n=2 Tax=Triticum turgidum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91044contigM-pyrifera_M_contig91044:214..784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score118.6
Seed ortholog evalue2.8e-24
Seed eggNOG ortholog4513.MLOC_30568.1
KEGG koko:K11801
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD40 repeats
EggNOG OGs37SIQ@33090,3GDCJ@35493,3I567@38820,3KY4X@4447,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons2
Model size506
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.0699823-CDS-M-pyrifera_M_contig91044:215..2401622816823.0699823-CDS-M-pyrifera_M_contig91044:215..240Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91044 216..240 -
1692278199.27146-CDS-M-pyrifera_M_contig91044:215..2401692278199.27146-CDS-M-pyrifera_M_contig91044:215..240Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91044 216..240 -
1622816823.0836952-CDS-M-pyrifera_M_contig91044:305..7841622816823.0836952-CDS-M-pyrifera_M_contig91044:305..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91044 306..784 -
1692278199.284698-CDS-M-pyrifera_M_contig91044:305..7841692278199.284698-CDS-M-pyrifera_M_contig91044:305..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91044 306..784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91044.21107.1prot_M-pyrifera_M_contig91044.21107.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91044 216..784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91044.21107.1

>prot_M-pyrifera_M_contig91044.21107.1 ID=prot_M-pyrifera_M_contig91044.21107.1|Name=mRNA_M-pyrifera_M_contig91044.21107.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
NSKGDGRYLISNSKDQTIKLWDVRKMVEPASALMPPRSSWDYRQGIYWVS
RERHLFDGSKEHKQDVSLKTYRGHDVARTLIRSYFSPAHSTGQRYIYSGS
CSGKITSTYLCMSWRQPISDRMPQFTMLSRATSSRPCEGIEPLSETSLGT
PMRRKLCPARGTEPSARG
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mRNA from alignment at M-pyrifera_M_contig91044:214..784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91044.21107.1 ID=mRNA_M-pyrifera_M_contig91044.21107.1|Name=mRNA_M-pyrifera_M_contig91044.21107.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=571bp|location=Sequence derived from alignment at M-pyrifera_M_contig91044:214..784- (Macrocystis pyrifera P11B4 male)
AACAGCAAAGGGGACGGCCGCTACCTCATCAGCAATTCGAAGGACCAGAC GATCAAGCTCTGGGATGTGAGGAAGATGGTTGAGCCGGCAAGTGCCCTGA TGCCTCCTCGTAGCTCTTGGGACTACCGACAAGGGATCTATTGGGTGTCG CGGGAGCGCCACCTCTTCGACGGCAGCAAGGAGCACAAACAAGACGTGTC TCTCAAGACCTATCGAGGCCATGACGTGGCGAGAACCCTCATACGCTCCT ACTTTTCACCAGCTCACTCCACAGGCCAGCGCTACATCTATTCTGGCTCC TGCTCCGGCAAGATCACTAGTACGTACCTTTGTATGAGCTGGAGGCAACC AATATCTGACCGAATGCCGCAGTTTACGATGTTGTCTCGGGCGACGTCGT CAAGACCTTGCGAGGGCATAGAGCCCCTGTCAGAGACCTCTCTTGGCACC CCCATGCGCCGGAAATTGTGTCCAGCTCGGTACGTCCCCCTTCCCTCCCT CCCTACTCGCGCACGCTTGTGCATTGGTTTGCTGACTGCAGCAGTGGGAC GGAACCATCCGCTCGTGGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91044:214..784-

>mRNA_M-pyrifera_M_contig91044.21107.1 ID=mRNA_M-pyrifera_M_contig91044.21107.1|Name=mRNA_M-pyrifera_M_contig91044.21107.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig91044:214..784- (Macrocystis pyrifera P11B4 male)
AACAGCAAAGGGGACGGCCGCTACCTCATCAGCAATTCGAAGGACCAGAC
GATCAAGCTCTGGGATGTGAGGAAGATGGTTGAGCCGGCAAGTGCCCTGA
TGCCTCCTCGTAGCTCTTGGGACTACCGACAAGGGATCTATTGGGTGTCG
CGGGAGCGCCACCTCTTCGACGGCAGCAAGGAGCACAAACAAGACGTGTC
TCTCAAGACCTATCGAGGCCATGACGTGGCGAGAACCCTCATACGCTCCT
ACTTTTCACCAGCTCACTCCACAGGCCAGCGCTACATCTATTCTGGCTCC
TGCTCCGGCAAGATCACTAGTACGTACCTTTGTATGAGCTGGAGGCAACC
AATATCTGACCGAATGCCGCAGTTTACGATGTTGTCTCGGGCGACGTCGT
CAAGACCTTGCGAGGGCATAGAGCCCCTGTCAGAGACCTCTCTTGGCACC
CCCATGCGCCGGAAATTGTGTCCAGCTCGAACAGCAAAGGGGACGGCCGC
TACCTCATCAGCAATTCGAAGGACCAGACGATCAAGCTCTGGGATGTGAG
GAAGATGGTTGAGCCGGCAAGTGCCCTGATGCCTCCTCGTAGCTCTTGGG
ACTACCGACAAGGGATCTATTGGGTGTCGCGGGAGCGCCACCTCTTCGAC
GGCAGCAAGGAGCACAAACAAGACGTGTCTCTCAAGACCTATCGAGGCCA
TGACGTGGCGAGAACCCTCATACGCTCCTACTTTTCACCAGCTCACTCCA
CAGGCCAGCGCTACATCTATTCTGGCTCCTGCTCCGGCAAGATCACTAGT
ACGTACCTTTGTATGAGCTGGAGGCAACCAATATCTGACCGAATGCCGCA
GTTTACGATGTTGTCTCGGGCGACGTCGTCAAGACCTTGCGAGGGCATAG
AGCCCCTGTCAGAGACCTCTCTTGGCACCCCCATGCGCCGGAAATTGTGT
CCAGCTCGTGGGACGGAACCATCCGCTCGTGGATGGGACGGAACCATCCG
CTCGTGGA
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