mRNA_M-pyrifera_M_contig91041.21106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91041.21106.1
Unique NamemRNA_M-pyrifera_M_contig91041.21106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: A0A507DL81_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DL81_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 1.550e-22
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:    1 MRRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            MRR  GIAGLQR+   ++Q+R+VG Q+  Q++A+M  QL  F+  LE FA+KY++DINRDP FR HFQ MC++IGVDPLA
Sbjct:   62 MRRGPGIAGLQRQAKEKEQFREVGQQIAAQQLAQMKSQLSVFKSNLEEFAKKYRKDINRDPVFRMHFQKMCANIGVDPLA 141
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: C1C0R1_CALCM (Vacuolar-sorting protein SNF8 n=1 Tax=Caligus clemensi TaxID=344056 RepID=C1C0R1_CALCM)

HSP 1 Score: 90.1 bits (222), Expect = 2.680e-20
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    4 RRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            RR  G+  +QRK    ++Y+  GSQL E E A+M +Q+ETFR +LE FAR +K DI +DP FR HFQ MC+SIGVDPLA
Sbjct:    3 RRTVGVGAIQRKKLDAERYKDKGSQLAENEFAEMNKQMETFRSKLEDFARDHKSDIKKDPHFRKHFQEMCASIGVDPLA 81
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: C1BSM7_LEPSM (Vacuolar-sorting protein SNF8 n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=C1BSM7_LEPSM)

HSP 1 Score: 89.7 bits (221), Expect = 3.970e-20
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    4 RRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            RR  G+  +QRK    ++++  GSQL E E A+M +Q+ETFR +LE FA+K+  DI +DPAFR HFQ MC+SIGVDPLA
Sbjct:    3 RRTVGVGAIQRKKLDAERFKDKGSQLAENEFAEMNKQMETFRNKLEEFAQKHTSDIKKDPAFRKHFQDMCASIGVDPLA 81
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: A0A151Z507_9MYCE (EAP30 family protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z507_9MYCE)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-19
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 MRRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLAC 243
            MRR  G+A +Q+    Q+Q + VG Q+T + V K+ EQL  F+  LE FA K+K+DI ++P FR HFQ MC+SIGVDPLAC
Sbjct:    1 MRRGVGLASIQKNQLQQKQLQSVGEQITAENVNKIKEQLIIFKENLEQFAIKHKKDIIKNPEFRKHFQDMCNSIGVDPLAC 81
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: A0A1Y2BRL4_9FUNG (Vacuolar-sorting protein SNF8 n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BRL4_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 1.030e-18
Identity = 41/78 (52.56%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    7 RNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            R  GIAG+QR  A +  + +VGS+L++Q++A++ +QL  F+  LESF+ KY+ +I  +P FRAHFQ+MC+SIGVDPLA
Sbjct:    2 RQRGIAGIQRAQAQKTHFERVGSELSQQQLAQLKQQLSVFKENLESFSIKYRNEIRSNPQFRAHFQSMCASIGVDPLA 79
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: A0A6J1FS90_CUCMO (Vacuolar protein sorting-associated protein n=27 Tax=rosids TaxID=71275 RepID=A0A6J1FS90_CUCMO)

HSP 1 Score: 83.6 bits (205), Expect = 9.380e-18
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 MRRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            MRR  GI GLQ   A + QYR++G  + +     M EQL TFR QLE FARK+K+DI+++PAFR+ F  MC+ +GVDPLA
Sbjct:    1 MRRRPGIGGLQTAAAARDQYRQLGENVAKLRTDMMKEQLSTFRSQLEDFARKHKKDISKNPAFRSQFHEMCAKVGVDPLA 80
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: A0A6J1IFB3_CUCMA (Vacuolar protein sorting-associated protein n=1 Tax=Cucurbita maxima TaxID=3661 RepID=A0A6J1IFB3_CUCMA)

HSP 1 Score: 83.6 bits (205), Expect = 9.380e-18
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 MRRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            MRR  GI GLQ   A + QYR++G  + +     M EQL TFR QLE FARK+K+DI+++PAFR+ F  MC+ +GVDPLA
Sbjct:    1 MRRRPGIGGLQTAAAARDQYRQLGENVAKLRTDMMKEQLSTFRSQLEDFARKHKKDISKNPAFRSQFHEMCAKVGVDPLA 80
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: UPI001929831C (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 22 homolog 1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929831C)

HSP 1 Score: 83.6 bits (205), Expect = 9.690e-18
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 MRRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            MRR  GIAGLQ   A + QYR VG  + +     M EQLETFR QLE FARK+K DI ++P FR+ F  MC+ +GVDPLA
Sbjct:    1 MRRRPGIAGLQTAAATRDQYRLVGENVAKIRTDLMKEQLETFRTQLEEFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA 80
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BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: A0A7S0VG45_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VG45_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.790e-17
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 MRRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            MRR AGIAGLQ     ++QY+K G  +       M EQ+  F+R LE FA KYK+DI +DP FRA F  MC SIGVDPLA
Sbjct:    1 MRRGAGIAGLQNAAKAKEQYKKAGEDIKTTNFEAMKEQMAVFKRNLEQFALKYKKDIRQDPLFRAQFHQMCMSIGVDPLA 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Match: UPI001E1D413E (vacuolar-sorting protein SNF8-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D413E)

HSP 1 Score: 82.8 bits (203), Expect = 1.790e-17
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    4 RRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFARKYKRDINRDPAFRAHFQTMCSSIGVDPLA 240
            RR AGIA ++ KN  Q +Y+  G+++ E + A+M +Q+ETF+  LE F  K+K +I +DP FRA FQ MC+S+GVDPLA
Sbjct:    3 RRGAGIAAIKNKNLAQAKYKDKGNEIAEDQFAQMSKQMETFKSHLEDFTAKHKDEIRKDPEFRAQFQEMCASVGVDPLA 81
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91041.21106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A507DL81_9FUNG1.550e-2258.75Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]
C1C0R1_CALCM2.680e-2056.96Vacuolar-sorting protein SNF8 n=1 Tax=Caligus clem... [more]
C1BSM7_LEPSM3.970e-2055.70Vacuolar-sorting protein SNF8 n=2 Tax=Lepeophtheir... [more]
A0A151Z507_9MYCE1.120e-1953.09EAP30 family protein n=1 Tax=Tieghemostelium lacte... [more]
A0A1Y2BRL4_9FUNG1.030e-1852.56Vacuolar-sorting protein SNF8 n=1 Tax=Rhizoclosmat... [more]
A0A6J1FS90_CUCMO9.380e-1853.75Vacuolar protein sorting-associated protein n=27 T... [more]
A0A6J1IFB3_CUCMA9.380e-1853.75Vacuolar protein sorting-associated protein n=1 Ta... [more]
UPI001929831C9.690e-1856.25LOW QUALITY PROTEIN: vacuolar protein sorting-asso... [more]
A0A7S0VG45_9CHLO1.790e-1755.00Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
UPI001E1D413E1.790e-1750.63vacuolar-sorting protein SNF8-like n=1 Tax=Mercena... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91041contigM-pyrifera_M_contig91041:452..694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score85.1
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog121225.PHUM354250-PA
Preferred namelsn
KEGG koko:K12188
KEGG Pathwayko04144,map04144
KEGG ModuleM00410
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000578,GO:0000814,GO:0003002,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006403,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007032,GO:0007034,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008298,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009790,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010008,GO:0010256,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030154,GO:0030163,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035282,GO:0036257,GO:0036258,GO:0036452,GO:0042058,GO:0042059,GO:0042886,GO:0042981,GO:0043067,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043328,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045324,GO:0045450,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0060810,GO:0060811,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901184,GO:1901185,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs
EggNOG OGs38FCZ@33154,3B9KQ@33208,3CUGF@33213,3E97Z@33342,3SFS4@50557,41UN2@6656,KOG3341@1,KOG3341@2759
COG Functional cat.U
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.032844-CDS-M-pyrifera_M_contig91041:451..6941622816823.032844-CDS-M-pyrifera_M_contig91041:451..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91041 452..694 +
1692278199.2517226-CDS-M-pyrifera_M_contig91041:451..6941692278199.2517226-CDS-M-pyrifera_M_contig91041:451..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91041 452..694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91041.21106.1prot_M-pyrifera_M_contig91041.21106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91041 452..694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91041.21106.1

>prot_M-pyrifera_M_contig91041.21106.1 ID=prot_M-pyrifera_M_contig91041.21106.1|Name=mRNA_M-pyrifera_M_contig91041.21106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MRRNAGIAGLQRKNAHQQQYRKVGSQLTEQEVAKMGEQLETFRRQLESFA
RKYKRDINRDPAFRAHFQTMCSSIGVDPLAC
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mRNA from alignment at M-pyrifera_M_contig91041:452..694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91041.21106.1 ID=mRNA_M-pyrifera_M_contig91041.21106.1|Name=mRNA_M-pyrifera_M_contig91041.21106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig91041:452..694+ (Macrocystis pyrifera P11B4 male)
ATGCGGCGCAACGCAGGCATTGCTGGGCTGCAGCGGAAGAATGCGCACCA
GCAGCAGTACCGCAAGGTGGGCTCGCAGCTGACGGAGCAGGAGGTGGCCA
AGATGGGCGAGCAGCTCGAGACCTTCCGCCGCCAACTGGAGAGCTTTGCG
CGCAAGTACAAGCGTGACATCAACCGCGACCCCGCCTTCCGCGCCCACTT
CCAGACCATGTGCTCCTCCATCGGCGTCGACCCTCTCGCCTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91041:452..694+

>mRNA_M-pyrifera_M_contig91041.21106.1 ID=mRNA_M-pyrifera_M_contig91041.21106.1|Name=mRNA_M-pyrifera_M_contig91041.21106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig91041:452..694+ (Macrocystis pyrifera P11B4 male)
ATGCGGCGCAACGCAGGCATTGCTGGGCTGCAGCGGAAGAATGCGCACCA
GCAGCAGTACCGCAAGGTGGGCTCGCAGCTGACGGAGCAGGAGGTGGCCA
AGATGGGCGAGCAGCTCGAGACCTTCCGCCGCCAACTGGAGAGCTTTGCG
CGCAAGTACAAGCGTGACATCAACCGCGACCCCGCCTTCCGCGCCCACTT
CCAGACCATGTGCTCCTCCATCGGCGTCGACCCTCTCGCCTGTATGCGGC
GCAACGCAGGCATTGCTGGGCTGCAGCGGAAGAATGCGCACCAGCAGCAG
TACCGCAAGGTGGGCTCGCAGCTGACGGAGCAGGAGGTGGCCAAGATGGG
CGAGCAGCTCGAGACCTTCCGCCGCCAACTGGAGAGCTTTGCGCGCAAGT
ACAAGCGTGACATCAACCGCGACCCCGCCTTCCGCGCCCACTTCCAGACC
ATGTGCTCCTCCATCGGCGTCGACCCTCTCGCCTGT
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