mRNA_M-pyrifera_M_contig91038.21105.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91038.21105.1
Unique NamemRNA_M-pyrifera_M_contig91038.21105.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A0A2R6WC89_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WC89_MARPO)

HSP 1 Score: 115 bits (287), Expect = 1.410e-30
Identity = 58/115 (50.43%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   19 PRLFALKKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEVDIKQ 363
            P L  +K++TGI GLPVVP AR+VL  LY K L+ V+ IP  A YR  VE+   HRL     +   +E+E+++G GQ+E+LI QA+ EL LIPKMAEWK WE P+G++V++ I++
Sbjct:    9 PLLGGVKETTGIVGLPVVPNAREVLIGLYRKTLDAVQPIPESAQYRKTVEEITQHRLAICNEEEDWKEIEKRVGNGQVEQLIQQAKDELTLIPKMAEWKPWEAPEGYKVQIMIEE 123          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A0A388LE77_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LE77_CHABU)

HSP 1 Score: 108 bits (270), Expect = 5.480e-28
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   13 SLPRLFALKKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVE 348
            S P L  +K++T I G  VVP AR+VL  LY   L  V+ IP  A YR DVEK A +RL   + +   E++E++IG GQ+EELI QA+ E+ LIPKMAEWK WEVP  H +E
Sbjct:    7 SRPLLARVKEATNIVGFEVVPNAREVLINLYNDMLRQVQVIPEQAKYRQDVEKVARYRLRVCEEEEDWEKIEKRIGCGQVEELIWQAKDEMTLIPKMAEWKPWEVPPNHHIE 118          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A0A2K1KJE1_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KJE1_PHYPA)

HSP 1 Score: 111 bits (278), Expect = 6.540e-28
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   19 PRLFALKKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEV 351
            P L ++K+STGI GL VVP AR+VL  LY + L+ V+ IP  A YR  VE    HRL   Q +   E +E++I  GQ+EELI QA+ EL LIPKMAEWK WEVP+G++VEV
Sbjct:  125 PLLASVKESTGIVGLDVVPNAREVLITLYQQTLKAVQPIPESAQYRKSVEALTHHRLKVCQEEQDWENIEKRIQGGQVEELIVQAKDELQLIPKMAEWKPWEVPEGYKVEV 235          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A0A7S3FPY6_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FPY6_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 2.670e-27
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   37 KKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEVDI 357
            K +TGI G+ V PEA   L  L  K L +VK IP +A YR+ VE  A  RL  V  D S E++E +IG+GQLEELI  A  EL+LIPKMAEWK W+VP+GH++++ +
Sbjct:   48 KTTTGIVGVEVDPEAPDTLRHLLKKILREVKVIPENAQYRVSVETMANQRLEVVSKDISPEQMEEEIGQGQLEELILHARDELSLIPKMAEWKPWDVPEGHKIKMVV 154          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: D8RH13_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RH13_SELML)

HSP 1 Score: 105 bits (263), Expect = 1.970e-26
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 RMFRSLPRLFALKKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEV 351
            R F   P L  +KKSTGITGL V P+AR+ L  LY + L   +SIP +A Y+  V K    RL   Q +   E++E +IG GQ+EELI QAE EL LIPKM EWK WEVP+GH++ +
Sbjct:    4 RRFHPGPLLAKVKKSTGITGLRVEPQAREKLLGLYQRTLLAAESIPEEAFYKQAVLKITNARLKVCQEEEDWEKIEERIGCGQVEELIKQAEDELKLIPKMIEWKPWEVPEGHKIRI 120          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A9NR96_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NR96_PICSI)

HSP 1 Score: 105 bits (261), Expect = 2.450e-26
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   19 PRLFALKKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEV 351
            P L  +K++TGI GL VVP AR+VL  LY K L ++K+IP +  YR  VE    HR    Q +   E +E++I  GQ+EELI  A+ EL LIPKMAEWK WEVPD +  E+
Sbjct:    9 PLLAKVKETTGIVGLEVVPNAREVLISLYDKTLNEIKTIPENVRYRKHVEAFTNHRRKVCQEEEDWETIEKRIACGQVEELIEDAQSELELIPKMAEWKPWEVPDDYHCEI 119          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A0A0D6R960_ARACU (Uncharacterized protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R960_ARACU)

HSP 1 Score: 104 bits (260), Expect = 4.180e-26
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   19 PRLFALKKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEV 351
            P L  +K+STG+ GL VVP AR+VL  LY K L++V+ IP +A YR  VE     RL   Q +   E +E++I  GQ+EELI  A+ EL+LIPKMAEWK WEVPD +  E+
Sbjct:    9 PLLAKVKESTGVVGLEVVPNAREVLISLYNKTLKEVQIIPPNAPYRKHVEAFTHQRLKVCQEEEDWELIEKRIACGQVEELIEDAQSELSLIPKMAEWKPWEVPDDYNCEI 119          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A0A5B8MRA6_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MRA6_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 7.140e-26
Identity = 55/107 (51.40%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   37 KKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEVDI 357
            K +TGI G+ V P A + L  L  K L +VK IP +A YR  VE  A  RL  V  D S E++E +IG+GQLEELI  A+ EL+LIPKMAEWK W+VP GH++ + +
Sbjct:   38 KTTTGIVGVEVDPNAPETLRHLLKKILREVKVIPENAQYRTSVEMMANERLAVVSKDISPEQMEDEIGQGQLEELILHAKDELSLIPKMAEWKPWDVPKGHKIRMIV 144          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A0A7S2Z7E0_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z7E0_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 1.070e-25
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1
Query:   37 KKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEVDI 357
            K +TGI G+ V P+A + L ++  + L +VK IP +A YR+ VE  A  RL  V  D   E++E +IG GQLEELI QA+ EL+LIPKMAEWK W VP+GH++++ +
Sbjct:   40 KTTTGIVGVEVDPQAPETLRKMLKQILREVKVIPENAQYRVSVEVMANERLEVVSKDIPPEQMEEEIGAGQLEELILQAKDELSLIPKMAEWKPWVVPEGHKIKMVV 146          
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Match: A0A8J9SH82_9CHLO (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SH82_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 8.570e-25
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   34 LKKSTGITGLPVVPEARKVLERLYIKQLEDV-KSIPADAAYRIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKMAEWKLWEVPDGHQVEVDIKQ 363
            LK  TGI GLPVVP AR+VL+    K L DV + IP D  YR  +E    +R+ AV+S A+ EEVE Q    QLE+LI Q + EL LIPKMAEWK W+VP GH++E  +++
Sbjct:   29 LKLDTGIVGLPVVPNAREVLKEKINKVLADVAEQIPEDTEYRRVLEATYNYRMKAVESGATDEEVEEQFTM-QLEQLIKQCDDELGLIPKMAEWKPWDVPPGHKIETIVEE 138          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91038.21105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R6WC89_MARPO1.410e-3050.43Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A388LE77_CHABU5.480e-2851.79Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2K1KJE1_PHYPA6.540e-2854.95Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A7S3FPY6_9CHLO2.670e-2752.34Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
D8RH13_SELML1.970e-2651.28Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A9NR96_PICSI2.450e-2650.45Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A0D6R960_ARACU4.180e-2651.35Uncharacterized protein n=2 Tax=Araucariaceae TaxI... [more]
A0A5B8MRA6_9CHLO7.140e-2651.40Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
A0A7S2Z7E0_9CHLO1.070e-2549.53Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A8J9SH82_9CHLO8.570e-2552.25Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91038contigM-pyrifera_M_contig91038:302..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score114.0
Seed ortholog evalue4.8e-23
Seed eggNOG ortholog3218.PP1S236_34V6.1
KEGG koko:K03949
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009853,GO:0009987,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
EggNOG free text desc.NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 5
EggNOG OGs37TSM@33090,3GCS6@35493,KOG3365@1,KOG3365@2759
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-21_001150.1
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size363
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.9823625-CDS-M-pyrifera_M_contig91038:301..6611622816822.9823625-CDS-M-pyrifera_M_contig91038:301..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91038 302..661 -
1692278199.2289288-CDS-M-pyrifera_M_contig91038:301..6611692278199.2289288-CDS-M-pyrifera_M_contig91038:301..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91038 302..661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.994604-UTR-M-pyrifera_M_contig91038:661..6641622816822.994604-UTR-M-pyrifera_M_contig91038:661..664Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91038 662..664 -
1692278199.2410583-UTR-M-pyrifera_M_contig91038:661..6641692278199.2410583-UTR-M-pyrifera_M_contig91038:661..664Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91038 662..664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91038.21105.1prot_M-pyrifera_M_contig91038.21105.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91038 302..661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91038.21105.1

>prot_M-pyrifera_M_contig91038.21105.1 ID=prot_M-pyrifera_M_contig91038.21105.1|Name=mRNA_M-pyrifera_M_contig91038.21105.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MFRSLPRLFALKKSTGITGLPVVPEARKVLERLYIKQLEDVKSIPADAAY
RIDVEKEALHRLGAVQSDASSEEVERQIGRGQLEELITQAEGELALIPKM
AEWKLWEVPDGHQVEVDIKQ
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mRNA from alignment at M-pyrifera_M_contig91038:302..664-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91038.21105.1 ID=mRNA_M-pyrifera_M_contig91038.21105.1|Name=mRNA_M-pyrifera_M_contig91038.21105.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig91038:302..664- (Macrocystis pyrifera P11B4 male)
AGGATGTTCAGAAGTCTGCCGCGACTGTTCGCATTGAAGAAGTCCACGGG GATCACTGGGCTGCCGGTGGTGCCGGAGGCGCGCAAGGTGCTGGAGCGGC TCTACATCAAGCAGCTGGAGGACGTGAAGAGCATCCCTGCAGACGCGGCC TACCGCATCGACGTGGAGAAGGAAGCCCTCCACCGCCTCGGAGCGGTGCA GAGCGACGCATCCTCGGAGGAGGTGGAGCGCCAGATCGGAAGGGGCCAAC TGGAGGAGCTCATCACGCAGGCAGAGGGCGAGCTGGCGCTGATCCCCAAG ATGGCCGAGTGGAAGCTCTGGGAGGTGCCCGACGGCCACCAGGTGGAGGT CGACATCAAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91038:302..664-

>mRNA_M-pyrifera_M_contig91038.21105.1 ID=mRNA_M-pyrifera_M_contig91038.21105.1|Name=mRNA_M-pyrifera_M_contig91038.21105.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig91038:302..664- (Macrocystis pyrifera P11B4 male)
ATGTTCAGAAGTCTGCCGCGACTGTTCGCATTGAAGAAGTCCACGGGGAT
CACTGGGCTGCCGGTGGTGCCGGAGGCGCGCAAGGTGCTGGAGCGGCTCT
ACATCAAGCAGCTGGAGGACGTGAAGAGCATCCCTGCAGACGCGGCCTAC
CGCATCGACGTGGAGAAGGAAGCCCTCCACCGCCTCGGAGCGGTGCAGAG
CGACGCATCCTCGGAGGAGGTGGAGCGCCAGATCGGAAGGGGCCAACTGG
AGGAGCTCATCACGCAGGCAGAGGGCGAGCTGGCGCTGATCCCCAAGATG
GCCGAGTGGAAGCTCTGGGAGGTGCCCGACGGCCACCAGGTGGAGGTCGA
CATCAAGCAGATGTTCAGAAGTCTGCCGCGACTGTTCGCATTGAAGAAGT
CCACGGGGATCACTGGGCTGCCGGTGGTGCCGGAGGCGCGCAAGGTGCTG
GAGCGGCTCTACATCAAGCAGCTGGAGGACGTGAAGAGCATCCCTGCAGA
CGCGGCCTACCGCATCGACGTGGAGAAGGAAGCCCTCCACCGCCTCGGAG
CGGTGCAGAGCGACGCATCCTCGGAGGAGGTGGAGCGCCAGATCGGAAGG
GGCCAACTGGAGGAGCTCATCACGCAGGCAGAGGGCGAGCTGGCGCTGAT
CCCCAAGATGGCCGAGTGGAAGCTCTGGGAGGTGCCCGACGGCCACCAGG
TGGAGGTCGACATCAAGCAG
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