mRNA_M-pyrifera_M_contig910.21099.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig910.21099.1
Unique NamemRNA_M-pyrifera_M_contig910.21099.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig910.21099.1 vs. uniprot
Match: D8LPQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ1_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.100e-22
Identity = 76/152 (50.00%), Postives = 92/152 (60.53%), Query Frame = 1 
Query:    1 MGRRELPQALTLERFAAGKDGRAKAFKKKKQANKRKLFEKAQLKRQYAKLLRKDAANGGLSAQPPIHIETAEVDTSPQLNDEAESGPSAPTVGNKQKKGAERGV---RRQRQGSHEEGVRKHNILE---TSNTKSGTMRR-EHRPDPFKEAK 435
            M R+ELPQALTLE+FAAGKDGRA AFKKKKQA KRKLFEKAQLKRQYAKLL+K+A    ++A+     +    D +  +  E  +G    T   K K+ A  G    RR+     + G R+  + E       K G  RR EHRPDPFK AK
Sbjct:    1 MARKELPQALTLEKFAAGKDGRANAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEA----VTARGEHGPDAPRSDGAAGVGKEKRAGRLVLTPNRKWKEEASGGELKRRRELSDDRQSGERQQ-VAEGRKQEQRKPGKWRRPEHRPDPFKAAK 147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig910.21099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPQ1_ECTSI2.100e-2250.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig910contigM-pyrifera_M_contig910:11160..12610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.5549486-CDS-M-pyrifera_M_contig910:11159..115001622816822.5549486-CDS-M-pyrifera_M_contig910:11159..11500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig910 11160..11500 -
1692278198.913319-CDS-M-pyrifera_M_contig910:11159..115001692278198.913319-CDS-M-pyrifera_M_contig910:11159..11500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig910 11160..11500 -
1622816822.567588-CDS-M-pyrifera_M_contig910:12516..126101622816822.567588-CDS-M-pyrifera_M_contig910:12516..12610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig910 12517..12610 -
1692278198.928466-CDS-M-pyrifera_M_contig910:12516..126101692278198.928466-CDS-M-pyrifera_M_contig910:12516..12610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig910 12517..12610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig910.21099.1prot_M-pyrifera_M_contig910.21099.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig910 11160..12610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig910.21099.1

>prot_M-pyrifera_M_contig910.21099.1 ID=prot_M-pyrifera_M_contig910.21099.1|Name=mRNA_M-pyrifera_M_contig910.21099.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MGRRELPQALTLERFAAGKDGRAKAFKKKKQANKRKLFEKAQLKRQYAKL
LRKDAANGGLSAQPPIHIETAEVDTSPQLNDEAESGPSAPTVGNKQKKGA
ERGVRRQRQGSHEEGVRKHNILETSNTKSGTMRREHRPDPFKEAK
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mRNA from alignment at M-pyrifera_M_contig910:11160..12610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig910.21099.1 ID=mRNA_M-pyrifera_M_contig910.21099.1|Name=mRNA_M-pyrifera_M_contig910.21099.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1451bp|location=Sequence derived from alignment at M-pyrifera_M_contig910:11160..12610- (Macrocystis pyrifera P11B4 male)
ATGGGCCGAAGAGAATTGCCGCAGGCTTTAACCCTTGAGAGATTTGCTGC
TGGCAAAGACGGCCGAGCCAAGGCCTTCAAAAAGAAAAAACAAGGTGGGA
GATGTGTACGTGGTAAGGGATGAGACACTGCGGGCTTGCTTGCTACCAGG
TACCCGTGGTGTCGTGCATCTACTGTTATAGGTACTGGATTTGTTTCCTC
ACTGCATCCAAGTTATTTGCACCCAAAAACCTGTGGTGCAGTTCTAACTC
AACTGCCCAGCTGTCCAGCGATCAAACACGACAACGAGCGTGAGCCCTCA
GCAGCGGCTGGATGAGAGTTGTCCGCTGTCCGCCATGAAGCAGACCCTAT
ATCCTTACATATTGTAGGTGCTAAACGACGACAAGCGACGACAAGCGTGC
GTGAGCCCTCAGCCGCGGCTGGATGAGAGTTGTCCGCAATGAAGCAGGCG
CTATATCCTTGCATATTGTAGGTGCTAACCGTGGTATACTTCGCTCGCTG
TTCGCAGTTAGACGGAGAAGCCGTACGTGTACGAATCTTACACGCGTATA
TTTATATCGCCTTATTTGTTCATTGCCCAAATCTACCTGACTGTGGGTGT
CCCACGTGTAATATACGACACCGACTATCGACAGCACGGTACGTCGCACT
CTCACACGTCACACTCCTCATTTGCACCAGCACCGCTCCACGCGGATGTT
ACTCGTTGCTTTCGACTTAGCTTGTGTATCTGTGGGTCTTACGATTTATC
TGTATCGCGCGCTCGAGAGACAGGCTATTATTAATAATGGTGACCTCCCG
TGTGACACGTATTTGTCGTGTGGGATATGTCTCTTTCATGTGTGTATCTT
CCGTGTATACCTCATGTCGTGGAAGTGGCTTCGTACCGTCCTTGGACCCC
CGACTGCTGTGTCTCGTTTAGCACCCGGTATGTTTTGCTTCCTATTAGTA
CGAATAGGCAAGGGTAGACTCCTTGTCATGTGTGTACTCGCGACCACCGC
GGCATATAGTATAGGCAACGAGGCTATGAGCTAAGTTTAATACTCGTGAC
GTTGATTGTGAGACGAACAACAGCACTCTCGTTTGTCTCACGCACCCCGC
CCACCACCAGCAAATAAGCGTAAGCTTTTCGAGAAGGCGCAGCTCAAACG
ACAATACGCCAAACTCCTACGGAAGGACGCGGCCAATGGAGGACTCAGTG
CCCAGCCACCCATTCACATCGAAACCGCGGAAGTTGACACCAGTCCTCAA
CTAAATGATGAGGCCGAGTCTGGACCATCAGCGCCCACAGTCGGGAACAA
ACAGAAGAAGGGAGCAGAGCGTGGAGTCCGAAGGCAAAGACAAGGCAGCC
ACGAAGAAGGGGTGCGGAAACACAATATATTGGAGACATCAAATACGAAG
TCGGGGACAATGAGACGAGAGCATCGACCAGACCCGTTCAAAGAGGCGAA
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig910:11160..12610-

>mRNA_M-pyrifera_M_contig910.21099.1 ID=mRNA_M-pyrifera_M_contig910.21099.1|Name=mRNA_M-pyrifera_M_contig910.21099.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig910:11160..12610- (Macrocystis pyrifera P11B4 male)
ATGGGCCGAAGAGAATTGCCGCAGGCTTTAACCCTTGAGAGATTTGCTGC
TGGCAAAGACGGCCGAGCCAAGGCCTTCAAAAAGAAAAAACAAGATGGGC
CGAAGAGAATTGCCGCAGGCTTTAACCCTTGAGAGATTTGCTGCTGGCAA
AGACGGCCGAGCCAAGGCCTTCAAAAAGAAAAAACAAGCAAATAAGCGTA
AGCTTTTCGAGAAGGCGCAGCTCAAACGACAATACGCCAAACTCCTACGG
AAGGACGCGGCCAATGGAGGACTCAGTGCCCAGCCACCCATTCACATCGA
AACCGCGGAAGTTGACACCAGTCCTCAACTAAATGATGAGGCCGAGTCTG
GACCATCAGCGCCCACAGTCGGGAACAAACAGAAGAAGGGAGCAGAGCGT
GGAGTCCGAAGGCAAAGACAAGGCAGCCACGAAGAAGGGGTGCGGAAACA
CAATATATTGGAGACATCAAATACGAAGTCGGGGACAATGAGACGAGAGC
ATCGACCAGACCCGTTCAAAGAGGCGAAGCAAATAAGCGTAAGCTTTTCG
AGAAGGCGCAGCTCAAACGACAATACGCCAAACTCCTACGGAAGGACGCG
GCCAATGGAGGACTCAGTGCCCAGCCACCCATTCACATCGAAACCGCGGA
AGTTGACACCAGTCCTCAACTAAATGATGAGGCCGAGTCTGGACCATCAG
CGCCCACAGTCGGGAACAAACAGAAGAAGGGAGCAGAGCGTGGAGTCCGA
AGGCAAAGACAAGGCAGCCACGAAGAAGGGGTGCGGAAACACAATATATT
GGAGACATCAAATACGAAGTCGGGGACAATGAGACGAGAGCATCGACCAG
ACCCGTTCAAAGAGGCGAAG
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