mRNA_M-pyrifera_M_contig910.21097.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig910.21097.1
Unique NamemRNA_M-pyrifera_M_contig910.21097.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: A0A6H5KH59_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH59_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.150e-51
Identity = 83/101 (82.18%), Postives = 93/101 (92.08%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDPLLPTLITEEFYEQLLEDVEMLDE 303
            PIFTFVNK+DRPSL PFELLDQIEREFGM+MAPVLWPIGDG++F+GVL+RDTNTVHLFERA+RT KATD+  + LHDP LP LITEE +EQLLEDVEMLDE
Sbjct:  181 PIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEEFKGVLDRDTNTVHLFERAARTKKATDMPEIDLHDPKLPELITEELHEQLLEDVEMLDE 281          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: D8LC91_ECTSI (PRF3, plastid translation release factor RF3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC91_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.410e-49
Identity = 83/101 (82.18%), Postives = 91/101 (90.10%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDPLLPTLITEEFYEQLLEDVEMLDE 303
            PIFTFVNK+DRPSL PFELLDQIEREFGM+MAPVLWPIGDG++F+GVL+RDT TVHLFERA RT KATD+  L LHDP LP LITEE +EQLLEDVEMLDE
Sbjct:  225 PIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEEFKGVLDRDTKTVHLFERAGRTKKATDMPELDLHDPKLPELITEELHEQLLEDVEMLDE 325          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: A0A836C6V6_9STRA (PRF3, plastid translation release factor RF3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V6_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.350e-37
Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDPLLPTLITEEFYEQLLEDVEMLD 300
            PIFTF NK+DRPSL PFELLDQIE +FG++M PVLWPIGDG  FQGVL+RDTN VHLFER  RT +A ++  L+L DP LP  I E  Y QL EDVE+L+
Sbjct:  205 PIFTFCNKLDRPSLSPFELLDQIEGDFGLQMVPVLWPIGDGPNFQGVLDRDTNLVHLFERGDRTGRAKEMGTLELDDPELPIAIGETLYNQLREDVEVLE 304          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: A0A7S2V815_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V815_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.570e-34
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAA--LKLHDPLLPTLITEEFYEQLLEDVEMLD 300
            PIFTF NKMDRP+L PFEL+DQIE EFG+ + P+LWPIGDG +F+GVL+R+TN VHL+E+  R  KA + A   + L DP+L  L+ EE Y QL+ED E+L+
Sbjct:   18 PIFTFCNKMDRPALSPFELMDQIEAEFGLELHPILWPIGDGPRFKGVLDRETNLVHLYEKGERGKKAVEEAQGPIPLDDPILKELLEEELYNQLMEDAEILE 119          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: A0A7S0HQF6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HQF6_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 7.580e-34
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDPLLPTLITE-EFYEQLLEDVEMLDE 303
            P+FTFVNKMDRP+L PFE++DQIE EFG+  +PVLWPIG GD+F+GVL+R  N VHLFERA+R A AT++  + L DP L  LI + E YE L+E+VEML E
Sbjct:  173 PLFTFVNKMDRPALSPFEIIDQIENEFGLVCSPVLWPIGSGDRFKGVLDRTNNQVHLFERAARGAMATELTTVMLDDPELAELIGDAELYEALIEEVEMLKE 274          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: A0A7S2WHP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHP1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.560e-33
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDPLLPTLITEEFYEQLLEDVEMLD 300
            PIFTF NKMDRP+L P EL+DQIE EFG+   PV+WPIGDG +FQGVL+R    V+LFER  RT KA D A + L DP L  LI E  Y QL+EDVE+LD
Sbjct:  214 PIFTFCNKMDRPALSPLELIDQIEGEFGLNCHPVVWPIGDGPEFQGVLDRQEGLVYLFERGDRTGKAKDKATVSLDDPDLEELIGERLYSQLMEDVEVLD 313          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: A0A7S4C4F1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C4F1_CHRCT)

HSP 1 Score: 124 bits (311), Expect = 5.080e-31
Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDPLLPTLI-TEEFYEQLLEDVEMLDE 303
            P+FTFVNK+DRPSL PFE+ D+IEREFG+  +PV+WPIG GD+F+GV +R T  VH+F+R  R +KA ++A++ + DP L  LI  +E Y QL++DVE++DE
Sbjct:  201 PLFTFVNKLDRPSLSPFEICDEIEREFGVACSPVMWPIGSGDRFKGVHDRRTGLVHVFQRGERGSKAEELASVPIDDPGLQALIGDDELYAQLIDDVEVVDE 302          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: A0A7S2FZH2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZH2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 9.020e-31
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDP-LLPTLITEEFYEQLLEDVEMLD 300
            P+FTF NKMDRP+L PFEL+DQIE +F +   PV+WPIG G++F+G+LER+T TVHLFE+  RT KA D+A + L D   L  L+  + Y QLLED EMLD
Sbjct:  190 PVFTFCNKMDRPALSPFELIDQIEADFKLTCVPVVWPIGMGEEFRGLLERETKTVHLFEKGIRTGKAVDMATVPLDDAETLEDLLGADVYAQLLEDAEMLD 290          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: R1CIP5_EMIHU (Putative mitochondrial elongation factor n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CIP5_EMIHU)

HSP 1 Score: 123 bits (308), Expect = 1.030e-30
Identity = 59/101 (58.42%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDPLLPTLITE-EFYEQLLEDVEMLD 300
            P+FTFVNK+DRPSL P+EL+DQIE EFG+   P+LWP+G GD+F+GVLER    VHLF R  R  KA + A + L D  L  LI + E Y QL++DVEMLD
Sbjct:  135 PLFTFVNKLDRPSLSPYELIDQIEAEFGISCCPLLWPVGSGDRFRGVLERGARRVHLFARGERGKKAEEAAVVSLDDDRLEALIGDGELYAQLIDDVEMLD 235          
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Match: W7TN94_9STRA (Peptide chain release factor 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN94_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.520e-30
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 PIFTFVNKMDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLFERASRTAKATDVAALKLHDPLLPTLITEEFYEQLLEDVEMLD 300
            PI+TFVNKMDRP+ GP EL+D+IERE G+ + P++WPIGDG+ F+GV +R+   VHLFER  R  KA  + AL L DP LP L+    + QL EDVE+LD
Sbjct:  280 PIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLD 379          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig910.21097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH59_9PHAE3.150e-5182.18Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
D8LC91_ECTSI3.410e-4982.18PRF3, plastid translation release factor RF3 n=1 T... [more]
A0A836C6V6_9STRA1.350e-3767.00PRF3, plastid translation release factor RF3 n=1 T... [more]
A0A7S2V815_9STRA4.570e-3458.82Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0HQF6_9EUKA7.580e-3462.75Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2WHP1_9STRA1.560e-3363.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4C4F1_CHRCT5.080e-3155.88Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2FZH2_9STRA9.020e-3158.42Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
R1CIP5_EMIHU1.030e-3058.42Putative mitochondrial elongation factor n=1 Tax=E... [more]
W7TN94_9STRA1.520e-3057.00Peptide chain release factor 3 n=2 Tax=Monodopsida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig910contigM-pyrifera_M_contig910:4689..5317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.8e-36
Seed eggNOG ortholog2880.D8LC91
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0480@1,KOG0465@2759
Ec32 ortholog descriptionPRF3, plastid translation release factor RF3
Ec32 orthologEc-14_005650.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size306
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig910.21097.1prot_M-pyrifera_M_contig910.21097.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig910 4713..5317 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.3667903-UTR-M-pyrifera_M_contig910:4688..47121622816822.3667903-UTR-M-pyrifera_M_contig910:4688..4712Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig910 4689..4712 +
1692278198.766815-UTR-M-pyrifera_M_contig910:4688..47121692278198.766815-UTR-M-pyrifera_M_contig910:4688..4712Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig910 4689..4712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.3817275-CDS-M-pyrifera_M_contig910:4712..48231622816822.3817275-CDS-M-pyrifera_M_contig910:4712..4823Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig910 4713..4823 +
1692278198.7773998-CDS-M-pyrifera_M_contig910:4712..48231692278198.7773998-CDS-M-pyrifera_M_contig910:4712..4823Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig910 4713..4823 +
1622816822.39377-CDS-M-pyrifera_M_contig910:5146..53171622816822.39377-CDS-M-pyrifera_M_contig910:5146..5317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig910 5147..5317 +
1692278198.786161-CDS-M-pyrifera_M_contig910:5146..53171692278198.786161-CDS-M-pyrifera_M_contig910:5146..5317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig910 5147..5317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig910.21097.1

>prot_M-pyrifera_M_contig910.21097.1 ID=prot_M-pyrifera_M_contig910.21097.1|Name=mRNA_M-pyrifera_M_contig910.21097.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MDRPSLGPFELLDQIEREFGMRMAPVLWPIGDGDQFQGVLERDTNTVHLF
ERASRTAKATDVAALKLHDPLLPTLITEEFYEQLLEDVEMLDE*
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mRNA from alignment at M-pyrifera_M_contig910:4689..5317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig910.21097.1 ID=mRNA_M-pyrifera_M_contig910.21097.1|Name=mRNA_M-pyrifera_M_contig910.21097.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=629bp|location=Sequence derived from alignment at M-pyrifera_M_contig910:4689..5317+ (Macrocystis pyrifera P11B4 male)
CCCATCTTTACGTTCGTCAACAAGATGGACCGGCCCTCGCTTGGCCCATT CGAGCTACTGGACCAAATTGAGCGCGAATTCGGTATGCGTATGGCCCCCG TGCTGTGGCCGATCGGGGATGGAGATCAGTTTCAGGTAAATTATAATCCA AACGATTTCGTTTTGAAAGTCTCTTATCAAGGCGCGAAGCCGGAGTCGGA AAGGGCAATGCTGACGTTTGCGCTGCACTCCCGGCATTGAGTACTGCAAT ATGGCACGCTTGAATGCGGCATAACGCGCATGCTCGACCGTGGATATTCC GTAATCCTGTCCCCGATGCTCACGTACGTGCATAGCTGGGAACAGAACGC AGCTTCGAGTATGTCCCTTACATTCTTGACGTCCACGTTAAACCTTAGCC AAGTGGCCTGTTTAACGTCATCGCTTGCTTTCCACCGCTTGGTCCACGCT TTGTGCAGGGGGTGTTAGAACGCGACACAAATACCGTGCACCTGTTTGAA AGGGCTAGCCGCACGGCAAAGGCGACAGATGTGGCTGCGCTTAAGCTGCA CGACCCGCTGCTTCCTACGCTGATCACGGAAGAATTCTACGAACAGCTCC TGGAAGATGTGGAGATGCTCGACGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig910:4689..5317+

>mRNA_M-pyrifera_M_contig910.21097.1 ID=mRNA_M-pyrifera_M_contig910.21097.1|Name=mRNA_M-pyrifera_M_contig910.21097.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig910:4689..5317+ (Macrocystis pyrifera P11B4 male)
ATGGACCGGCCCTCGCTTGGCCCATTCGAGCTACTGGACCAAATTGAGCG
CGAATTCGGTATGCGTATGGCCCCCGTGCTGTGGCCGATCGGGGATGGAG
ATCAGTTTCAGATGGACCGGCCCTCGCTTGGCCCATTCGAGCTACTGGAC
CAAATTGAGCGCGAATTCGGTATGCGTATGGCCCCCGTGCTGTGGCCGAT
CGGGGATGGAGATCAGTTTCAGGGGGTGTTAGAACGCGACACAAATACCG
TGCACCTGTTTGAAAGGGCTAGCCGCACGGCAAAGGCGACAGATGTGGCT
GCGCTTAAGCTGCACGACCCGCTGCTTCCTACGCTGATCACGGAAGAATT
CTACGAACAGCTCCTGGAAGATGTGGAGATGCTCGACGAGTGAGGGGTGT
TAGAACGCGACACAAATACCGTGCACCTGTTTGAAAGGGCTAGCCGCACG
GCAAAGGCGACAGATGTGGCTGCGCTTAAGCTGCACGACCCGCTGCTTCC
TACGCTGATCACGGAAGAATTCTACGAACAGCTCCTGGAAGATGTGGAGA
TGCTCGACGAGTGA
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