mRNA_M-pyrifera_M_contig90972.21091.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90972.21091.1
Unique NamemRNA_M-pyrifera_M_contig90972.21091.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: A0A836C9G4_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9G4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.550e-26
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    4 EFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            EF  +G+ C+AP C LKDFLPFDCD CQQ +CL+HR+Y  H+CP S  + +    CP+  + IR++   DAN+ W RH+   C
Sbjct:    3 EFTEIGQRCSAPLCNLKDFLPFDCDCCQQVFCLNHRSYASHECPLSGTKNMTAIVCPLCKSTIRLSDAQDANAEWERHARTSC 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: A0A7S1CFG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFG3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.300e-24
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 MEFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            MEFAH+G HC    CR +DFLPF CD C  T+CLDHR+Y  H+CP++   +    +CP+ +   ++ A +DAN  W RHS   C
Sbjct:    1 MEFAHLGAHCDVKTCRQRDFLPFTCDCCDGTFCLDHRSYRTHECPKAAELDSVAIKCPLCSQAFKLGAGEDANVAWERHSRDGC 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: A0A1Q3ANI2_CEPFO (Zf-AN1 domain-containing protein/zf-C2H2_6 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3ANI2_CEPFO)

HSP 1 Score: 100 bits (248), Expect = 1.390e-23
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    4 EFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            EF  +G+HC    C+L DFLPF CD C Q +CL+HR+YT H CP++D  +V    CP+ A  +R+N ++D N  W  H   DC
Sbjct:    5 EFPDLGKHCTVDECKLIDFLPFTCDRCTQVFCLEHRSYTKHNCPKADRNDVTVVICPLCAKGVRLNPDEDPNITWETHVNTDC 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: A0A4D9CQH8_9STRA (AN1-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQH8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.440e-23
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 MEFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHS-ERDCNAARRSER 276
            MEF  +G HCA   C ++DFLPF CD C +T+CL+HR Y+ H CP    ++    RCP+ +A + + A  D N VW  HS  RDC+  R+++R
Sbjct:    1 MEFQDLGAHCAVTTCNMRDFLPFLCDCCHKTHCLEHRTYSSHACPHQGRKQQMAIRCPLCSATLALTAAQDPNVVWQLHSGSRDCDPTRKTKR 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: A0A087GYP5_ARAAL (Uncharacterized protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GYP5_ARAAL)

HSP 1 Score: 98.2 bits (243), Expect = 2.980e-23
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    4 EFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            EF  +G+HC+   C+  DFLPF CD C Q +CLDHR+Y  HKCP+ +  +V    CP+ A  +R+N E+D N  W +H   DC
Sbjct:    5 EFPDLGKHCSVDYCKQIDFLPFTCDRCTQVFCLDHRSYMKHKCPKGNRGDVTVVICPLCAKGVRLNPEEDPNITWEKHVNADC 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: UPI00053C9D29 (zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9D29)

HSP 1 Score: 97.8 bits (242), Expect = 8.320e-23
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    4 EFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            EF  +G+HC+   C+L DFLPF CD C Q +CLDHR+Y  H CP+ +  +V    CP+ A  +R+N ++D N  W +H   DC
Sbjct:    5 EFPDLGKHCSVDDCKLIDFLPFTCDRCLQVFCLDHRSYIKHSCPKGNRGDVTVVICPLCAKGVRLNPDEDPNITWEKHVNTDC 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: T1ND61_TRIUA (C2H2-type domain-containing protein n=13 Tax=Pooideae TaxID=147368 RepID=T1ND61_TRIUA)

HSP 1 Score: 97.8 bits (242), Expect = 9.710e-23
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    4 EFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            EF  +GRHC+   C   DFLPF CD C   +CL HR+YT HKCP++++++V    CP+ A  +R+N  +DAN  W  H   DC
Sbjct:    5 EFPDLGRHCSVGDCHQIDFLPFTCDRCDFVFCLQHRSYTSHKCPKANNKDVTVVVCPLCAKGVRLNPNEDANITWESHVNTDC 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: A0A3S3M5V0_9MAGN (Zinc finger AN1 and C2H2 domain-containing protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3M5V0_9MAGN)

HSP 1 Score: 97.8 bits (242), Expect = 9.710e-23
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 EFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            EF  +G+HC+   C+L DFLPF CD C+Q +CL+HR+YT H CP++D ++V    CP+ A  +R++  +D N  W  H   DC
Sbjct:    5 EFPDLGKHCSVDECKLIDFLPFTCDRCKQAFCLEHRSYTKHSCPKADLQDVTVLVCPLCAKGVRLDPNEDPNITWDSHVNTDC 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: A0A078FPF9_BRANA ((rape) hypothetical protein n=7 Tax=Brassica TaxID=3705 RepID=A0A078FPF9_BRANA)

HSP 1 Score: 96.3 bits (238), Expect = 2.050e-22
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 EFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            EF  +G+HC+   C+  DFLPF CD C Q +CLDHR+Y  H CP+ D  +V    CP+ A  +R+N  +D N  W +H   DC
Sbjct:    5 EFPDLGKHCSVDICKQIDFLPFTCDRCLQVFCLDHRSYMKHTCPKGDREDVTVIICPLCAKGVRLNPNEDPNITWEKHVNTDC 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Match: A0A6J0NGV1_RAPSA (zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 n=2 Tax=Brassiceae TaxID=981071 RepID=A0A6J0NGV1_RAPSA)

HSP 1 Score: 96.3 bits (238), Expect = 2.050e-22
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 EFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHREVRGFRCPV*AAMIRMNAEDDANSVWHRHSERDC 252
            EF  +G+HC+   C+  DFLPF CD C Q +CLDHR+Y  H CP+ D  +V    CP+ A  +R+N  +D N  W +H   DC
Sbjct:    5 EFPDLGKHCSVDICKQIDFLPFTCDRCLQVFCLDHRSYMKHSCPKGDREDVTVVICPLCAKGVRLNPNEDPNITWEKHVNTDC 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90972.21091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9G4_9STRA2.550e-2648.19AN1-type domain-containing protein n=1 Tax=Tribone... [more]
A0A7S1CFG3_9STRA1.300e-2446.43Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1Q3ANI2_CEPFO1.390e-2345.78Zf-AN1 domain-containing protein/zf-C2H2_6 domain-... [more]
A0A4D9CQH8_9STRA1.440e-2344.09AN1-type domain-containing protein n=2 Tax=Monodop... [more]
A0A087GYP5_ARAAL2.980e-2345.78Uncharacterized protein n=1 Tax=Arabis alpina TaxI... [more]
UPI00053C9D298.320e-2344.58zinc finger AN1 and C2H2 domain-containing stress-... [more]
T1ND61_TRIUA9.710e-2345.78C2H2-type domain-containing protein n=13 Tax=Pooid... [more]
A0A3S3M5V0_9MAGN9.710e-2344.58Zinc finger AN1 and C2H2 domain-containing protein... [more]
A0A078FPF9_BRANA2.050e-2244.58(rape) hypothetical protein n=7 Tax=Brassica TaxID... [more]
A0A6J0NGV1_RAPSA2.050e-2244.58zinc finger AN1 and C2H2 domain-containing stress-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90972contigM-pyrifera_M_contig90972:505..780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.9
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog3847.GLYMA10G17510.2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Zinc finger AN1 and C2H2 domain-containing stress-associated protein
EggNOG OGs37NFK@33090,3GBUZ@35493,4JJYN@91835,KOG3183@1,KOG3183@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size180
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.0935664-CDS-M-pyrifera_M_contig90972:504..6841622816822.0935664-CDS-M-pyrifera_M_contig90972:504..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90972 505..684 +
1692278198.6484933-CDS-M-pyrifera_M_contig90972:504..6841692278198.6484933-CDS-M-pyrifera_M_contig90972:504..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90972 505..684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.1061468-UTR-M-pyrifera_M_contig90972:684..7801622816822.1061468-UTR-M-pyrifera_M_contig90972:684..780Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90972 685..780 +
1692278198.6622825-UTR-M-pyrifera_M_contig90972:684..7801692278198.6622825-UTR-M-pyrifera_M_contig90972:684..780Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90972 685..780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90972.21091.1prot_M-pyrifera_M_contig90972.21091.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90972 505..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90972.21091.1

>prot_M-pyrifera_M_contig90972.21091.1 ID=prot_M-pyrifera_M_contig90972.21091.1|Name=mRNA_M-pyrifera_M_contig90972.21091.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MEFAHVGRHCAAPGCRLKDFLPFDCDACQQTYCLDHRAYTDHKCPRSDHR
EVRGFRCPV*
back to top

mRNA from alignment at M-pyrifera_M_contig90972:505..780+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90972.21091.1 ID=mRNA_M-pyrifera_M_contig90972.21091.1|Name=mRNA_M-pyrifera_M_contig90972.21091.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig90972:505..780+ (Macrocystis pyrifera P11B4 male)
ATGGAGTTCGCCCACGTCGGCCGTCACTGCGCTGCGCCAGGCTGCCGCCT
GAAAGACTTCTTGCCATTCGATTGCGATGCGTGCCAGCAGACGTACTGCT
TGGACCACAGGGCGTACACAGACCACAAGTGTCCACGGTCGGACCATCGC
GAGGTTCGCGGGTTCAGGTGCCCTGTGTGAGCCGCAATGATCCGCATGAA
CGCCGAGGACGACGCCAACTCAGTGTGGCACCGCCACTCGGAGCGCGACT
GCAACGCTGCTCGACGCAGCGAGCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90972:505..780+

>mRNA_M-pyrifera_M_contig90972.21091.1 ID=mRNA_M-pyrifera_M_contig90972.21091.1|Name=mRNA_M-pyrifera_M_contig90972.21091.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig90972:505..780+ (Macrocystis pyrifera P11B4 male)
ATGGAGTTCGCCCACGTCGGCCGTCACTGCGCTGCGCCAGGCTGCCGCCT
GAAAGACTTCTTGCCATTCGATTGCGATGCGTGCCAGCAGACGTACTGCT
TGGACCACAGGGCGTACACAGACCACAAGTGTCCACGGTCGGACCATCGC
GAGGTTCGCGGGTTCAGGTGCCCTGTGTGAATGGAGTTCGCCCACGTCGG
CCGTCACTGCGCTGCGCCAGGCTGCCGCCTGAAAGACTTCTTGCCATTCG
ATTGCGATGCGTGCCAGCAGACGTACTGCTTGGACCACAGGGCGTACACA
GACCACAAGTGTCCACGGTCGGACCATCGCGAGGTTCGCGGGTTCAGGTG
CCCTGTGTGA
back to top