mRNA_M-pyrifera_M_contig90970.21090.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90970.21090.1
Unique NamemRNA_M-pyrifera_M_contig90970.21090.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: A0A383WLA8_TETOB (UBC core domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383WLA8_TETOB)

HSP 1 Score: 135 bits (341), Expect = 6.000e-39
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGPNGEAHP 288
            VPRNFRLLEELE+GEKG  GDGT+SYG+ED+ DM+M NW GTI+GP+NT  +GRIY+LK  C   YP RPP VRF S+INMDCV P+G   P
Sbjct:    5 VPRNFRLLEELEKGEKG-IGDGTVSYGMEDADDMLMRNWTGTIIGPSNTVHDGRIYTLKFHCDLNYPARPPLVRFQSKINMDCVLPDGRVDP 95
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BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: A0A6J1HM74_CUCMO (ubiquitin-conjugating enzyme E2 variant 1B isoform X1 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HM74_CUCMO)

HSP 1 Score: 136 bits (342), Expect = 7.700e-39
Identity = 64/100 (64.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGPN-GEAHPPLLPLFS 309
            VPRNFRLLEELE GEKG  GDGT+SYG++D+ D+ M +W GTI+GP NT  EGRIY LKL CGQ+YP  PP+VRF +RINM CV P  G   P L P+ S
Sbjct:   10 VPRNFRLLEELERGEKG-IGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLS 108
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BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: F4I6V4_ARATH (MMS ZWEI homologue 2 n=11 Tax=Brassicaceae TaxID=3700 RepID=F4I6V4_ARATH)

HSP 1 Score: 135 bits (341), Expect = 7.870e-39
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGP-NGEAHPPLLPLFS 309
            VPRNFRLLEELE GEKG  GDGT+SYG++D+ D++M +W GTILGP NT++EG+I+ LKL CG++YP+ PP VRF SRINM CV P NG   P   P+ S
Sbjct:   10 VPRNFRLLEELERGEKG-IGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLS 108
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BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: A0A6J1JNZ0_CUCMA (ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 n=4 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JNZ0_CUCMA)

HSP 1 Score: 136 bits (342), Expect = 9.200e-39
Identity = 64/100 (64.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGPN-GEAHPPLLPLFS 309
            VPRNFRLLEELE GEKG  GDGT+SYG++D+ D+ M +W GTI+GP NT  EGRIY LKL CGQ+YP  PP+VRF +RINM CV P  G   P L P+ S
Sbjct:   10 VPRNFRLLEELERGEKG-IGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLS 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B n=2 Tax=Arabidopsis thaliana TaxID=3702 RepID=UEV1B_ARATH)

HSP 1 Score: 135 bits (341), Expect = 1.090e-38
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGP-NGEAHPPLLPLFS 309
            VPRNFRLLEELE GEKG  GDGT+SYG++D+ D++M +W GTILGP NT++EG+I+ LKL CG++YP+ PP VRF SRINM CV P NG   P   P+ S
Sbjct:   10 VPRNFRLLEELERGEKG-IGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLS 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A n=33 Tax=Brassicaceae TaxID=3700 RepID=UEV1A_ARATH)

HSP 1 Score: 134 bits (338), Expect = 3.030e-38
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGPN-GEAHPPLLPLFS 309
            VPRNFRLLEELE GEKG  GDGT+SYG++D+ D+ M +W GTILGP NT++EG+I+ LKL CG+EYP+ PP VRF +RINM CV P  G   P L P+ +
Sbjct:   10 VPRNFRLLEELERGEKG-IGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLT 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: A0A835JSZ1_9ROSI (UBC core domain-containing protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835JSZ1_9ROSI)

HSP 1 Score: 138 bits (348), Expect = 3.460e-38
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:    1 VGGAVPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGP-NGEAHPPLLPLFS 309
            V  AVPRNFRLLEELE GEKG  GDGT+SYG++D+ D+ M +W GTI+GP NT  EGRIY LKL CG++YP  PP+VRF +RINM CV P NG   P L P+ +
Sbjct:   10 VSTAVPRNFRLLEELERGEKG-IGDGTVSYGMDDADDIFMQSWTGTIIGPPNTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINMTCVNPENGVVEPSLFPMLA 112
[Close]
BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: A0BDP7_PARTE (UBC core domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BDP7_PARTE)

HSP 1 Score: 133 bits (335), Expect = 5.050e-38
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGPNGE 279
            VPR FRLLEEL+ GEKG  GDGT+SYGLED+ DM MTNW GTILGP NTSFE RIYSLK+TCG +YPK  P V+F ++IN+ CV  NG+
Sbjct:    7 VPRRFRLLEELQNGEKG-IGDGTVSYGLEDAEDMQMTNWNGTILGPYNTSFENRIYSLKITCGPQYPKVAPQVKFVTKINLPCVQANGQ 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: A0A3P6CAV3_BRACM (UBC core domain-containing protein n=4 Tax=Brassica TaxID=3705 RepID=A0A3P6CAV3_BRACM)

HSP 1 Score: 134 bits (337), Expect = 5.930e-38
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGPN-GEAHPPLLPLFS 309
            VPRNFRLLEELE GEKG  GDGT+SYG++D+ D+ M +W GTILGP NT++EG+I+ LKL CG+EYP+ PP VRF +RINM CV P  G   P L P+ +
Sbjct:   10 VPRNFRLLEELERGEKG-IGDGTVSYGMDDADDIYMQSWTGTILGPHNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLA 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Match: UPI001C7C3396 (Ubiquitin-conjugating enzyme spm2 n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7C3396)

HSP 1 Score: 133 bits (334), Expect = 6.750e-38
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   13 VPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGPANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGP-NGEAHPPLLPLFS 309
            VPRNFRLLEELE+GEKG  GDG+ SYGLED  D+MM+NW GTI+GP +T  E RIYSLK+TCG  YP  PP V+F SR+N+ CV   NGE  P  LP+ +
Sbjct:    4 VPRNFRLLEELEKGEKG-IGDGSCSYGLEDGDDIMMSNWTGTIIGPGHTVHENRIYSLKITCGDNYPDAPPKVKFLSRVNLPCVNQTNGEVDPQKLPVLN 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90970.21090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A383WLA8_TETOB6.000e-3967.39UBC core domain-containing protein n=2 Tax=Scenede... [more]
A0A6J1HM74_CUCMO7.700e-3964.00ubiquitin-conjugating enzyme E2 variant 1B isoform... [more]
F4I6V4_ARATH7.870e-3963.00MMS ZWEI homologue 2 n=11 Tax=Brassicaceae TaxID=3... [more]
A0A6J1JNZ0_CUCMA9.200e-3964.00ubiquitin-conjugating enzyme E2 variant 1A-like is... [more]
UEV1B_ARATH1.090e-3863.00Ubiquitin-conjugating enzyme E2 variant 1B n=2 Tax... [more]
UEV1A_ARATH3.030e-3862.00Ubiquitin-conjugating enzyme E2 variant 1A n=33 Ta... [more]
A0A835JSZ1_9ROSI3.460e-3862.50UBC core domain-containing protein n=1 Tax=Salix d... [more]
A0BDP7_PARTE5.050e-3869.66UBC core domain-containing protein n=2 Tax=Paramec... [more]
A0A3P6CAV3_BRACM5.930e-3862.00UBC core domain-containing protein n=4 Tax=Brassic... [more]
UPI001C7C33966.750e-3863.00Ubiquitin-conjugating enzyme spm2 n=1 Tax=Marasmiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90970contigM-pyrifera_M_contig90970:197..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score137.1
Seed ortholog evalue4.8e-30
Seed eggNOG ortholog3702.AT1G70650.2
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009451,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0016043,GO:0016070,GO:0016071,GO:0016556,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1900865,GO:1900871,GO:1901360
EggNOG free text desc.zinc finger
EggNOG OGs37KK4@33090,3G9GN@35493,3HQ8M@3699,KOG0896@1,KOG0896@2759,KOG4198@1,KOG4198@2759
COG Functional cat.S
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.0603297-CDS-M-pyrifera_M_contig90970:196..5171622816822.0603297-CDS-M-pyrifera_M_contig90970:196..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90970 197..517 -
1692278198.632167-CDS-M-pyrifera_M_contig90970:196..5171692278198.632167-CDS-M-pyrifera_M_contig90970:196..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90970 197..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90970.21090.1prot_M-pyrifera_M_contig90970.21090.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90970 197..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90970.21090.1

>prot_M-pyrifera_M_contig90970.21090.1 ID=prot_M-pyrifera_M_contig90970.21090.1|Name=mRNA_M-pyrifera_M_contig90970.21090.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
VGGAVPRNFRLLEELEEGEKGQAGDGTISYGLEDSGDMMMTNWIGTILGP
ANTSFEGRIYSLKLTCGQEYPKRPPAVRFASRINMDCVGPNGEAHPPLLP
LFSPLL*
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mRNA from alignment at M-pyrifera_M_contig90970:197..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90970.21090.1 ID=mRNA_M-pyrifera_M_contig90970.21090.1|Name=mRNA_M-pyrifera_M_contig90970.21090.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig90970:197..517- (Macrocystis pyrifera P11B4 male)
GTTGGTGGCGCAGTCCCGAGGAACTTTCGGCTGCTGGAGGAGTTGGAGGA
GGGCGAGAAGGGCCAGGCGGGCGACGGCACCATCAGCTACGGCCTGGAGG
ACTCGGGCGACATGATGATGACCAACTGGATTGGCACCATCCTGGGGCCG
GCCAACACATCCTTCGAGGGCCGCATCTACAGCCTCAAGCTCACGTGCGG
CCAGGAGTACCCCAAGCGCCCGCCCGCCGTCCGCTTCGCCTCGCGCATCA
ACATGGACTGCGTCGGCCCCAACGGCGAGGCACACCCTCCCCTCCTCCCT
CTCTTCTCTCCCTTACTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90970:197..517-

>mRNA_M-pyrifera_M_contig90970.21090.1 ID=mRNA_M-pyrifera_M_contig90970.21090.1|Name=mRNA_M-pyrifera_M_contig90970.21090.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig90970:197..517- (Macrocystis pyrifera P11B4 male)
GTTGGTGGCGCAGTCCCGAGGAACTTTCGGCTGCTGGAGGAGTTGGAGGA
GGGCGAGAAGGGCCAGGCGGGCGACGGCACCATCAGCTACGGCCTGGAGG
ACTCGGGCGACATGATGATGACCAACTGGATTGGCACCATCCTGGGGCCG
GCCAACACATCCTTCGAGGGCCGCATCTACAGCCTCAAGCTCACGTGCGG
CCAGGAGTACCCCAAGCGCCCGCCCGCCGTCCGCTTCGCCTCGCGCATCA
ACATGGACTGCGTCGGCCCCAACGGCGAGGCACACCCTCCCCTCCTCCCT
CTCTTCTCTCCCTTACTATGAGTTGGTGGCGCAGTCCCGAGGAACTTTCG
GCTGCTGGAGGAGTTGGAGGAGGGCGAGAAGGGCCAGGCGGGCGACGGCA
CCATCAGCTACGGCCTGGAGGACTCGGGCGACATGATGATGACCAACTGG
ATTGGCACCATCCTGGGGCCGGCCAACACATCCTTCGAGGGCCGCATCTA
CAGCCTCAAGCTCACGTGCGGCCAGGAGTACCCCAAGCGCCCGCCCGCCG
TCCGCTTCGCCTCGCGCATCAACATGGACTGCGTCGGCCCCAACGGCGAG
GCACACCCTCCCCTCCTCCCTCTCTTCTCTCCCTTACTATGA
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