mRNA_M-pyrifera_M_contig90964.21085.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90964.21085.1
Unique NamemRNA_M-pyrifera_M_contig90964.21085.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90964.21085.1 vs. uniprot
Match: A0A7X0LM56_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LM56_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 1.690e-17
Identity = 58/195 (29.74%), Postives = 91/195 (46.67%), Query Frame = 1 
Query:   22 RAFMDRVKADLQIDSEEGWRNVTARDIARRGGRGLI-DRHRGSVLALLQNCYPEAPPTPWRCRKKLPTGFWEDRENGRAFLQDVAKRMHLRSVEDWMEVTSSQVNAYGGKGLLVRYSSLLEAVKDLV---DGTENLSLDSPCAAARGQWSNKEYRRGFLERLADAH-GVKSAGDWKKLGLKDVRDAGGGALLGWY 591
            RA+M  +   L+      W  ++  D  R GG GL+ + +R S +  L+   P      WR  +  P  FW D EN + ++  + K++  R+ EDW ++T      + G  LL    S +E +++     D  E   +  P     G W+    R  +   L +++ G  SA DW+ L   DVRD GGG+LLG Y
Sbjct:   99 RAYMTWLGKQLKFKKNTDWYRLSKSDFNRFGGEGLLANYYRNSPIHALREFKPSVNWQEWRFAE-APQRFWHDPENRQRYMHWLGKQLKYRTPEDWCDITRRDFQQHHGSALLQAGWSPIELIRETFPEYDWHEWHFVRVP----NGFWNKPRNRNAYFHWLGESYCGFNSADDWQTLTRADVRDTGGGSLLGVY 288
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BLAST of mRNA_M-pyrifera_M_contig90964.21085.1 vs. uniprot
Match: A0A7S4INR8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4INR8_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 4.340e-12
Identity = 42/139 (30.22%), Postives = 68/139 (48.92%), Query Frame = 1 
Query:  205 RKKLPTGFWEDRENGRAFLQDVAKRMHLRSVEDWMEVTSSQVNAYGGKGLLVRYSSLLEAVKDLVD--GTENLSLDSPCAAARGQWSNKEYRRGFLERLADAHGVKSAGDWKKLGLKDVRDAGGGALLGWYGGSLRTAL 615
            R + P G+W   +N R F   +AK+ ++     W  V+  QV   GG  +L+RYSSL +A++ +    G E  S+          W+N +++R F +  A  H +    DW  +  + +  AG  A+L  Y  SL +AL
Sbjct:   43 RGRKPPGYWNSMDNQRQFFDQIAKKYNVTKPSQWNRVSYQQVAKEGGVTVLLRYSSLKQALQSVYPEHGHEWDSVTIRSRVPNHYWANLKHQREFFDDFASKHKLTKPSDWCNITYRQLEAAGAAAILHRYP-SLHSAL 180
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BLAST of mRNA_M-pyrifera_M_contig90964.21085.1 vs. uniprot
Match: A0A7S4M3I1_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M3I1_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 1.510e-10
Identity = 46/181 (25.41%), Postives = 78/181 (43.09%), Query Frame = 1 
Query:   52 LQIDSEEGWRNVTARDIARRGGRGLIDRHRGSVLALLQNCYPEAPPTPWRCRKKLPTGFWEDRENGRAFLQDVAKRMHLRSVEDWMEVTSSQVNAYGGKGLLVRYSSLLEAVKDLVDGTENLSLDSPCAAARGQWSNKEYRRGFLERLADAHGVKSAGDWKKLGLKDVRDAGGGALLGWYG 594
            L + S   W +V  +D+   GG  L+ R+  +  + L +  P         R   P  +W D+ N RAFL  +A++  LR+ EDW       +  + G  +L  Y S    ++D    T               W++ E ++ F+E + +   ++S  DWK L  +   + GG  +L  YG
Sbjct:   57 LGVKSLSDWYHVKRKDVCDSGGGQLL-RYYPNFQSALNDLLPGLHDELGE-RSHKPRHYWNDKNNHRAFLHQIAEKESLRTPEDWYRAGVKVIYKHKGSRVLSFYQSWFHMIQDHFPITNWAKFYQTENLPAAFWNSTENQKKFMEYVKETERIRSEDDWKSLKPERFCELGGRLILHRYG 235
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BLAST of mRNA_M-pyrifera_M_contig90964.21085.1 vs. uniprot
Match: A0A7S4M5H6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M5H6_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 5.120e-8
Identity = 36/131 (27.48%), Postives = 65/131 (49.62%), Query Frame = 1 
Query:    7 DAAKERAFMDRVKADLQIDSEEGWRNVTARDIARRGGRGLIDRHRGSVLALLQNCYPEAPPTPWRCRKK-LPTGFWEDRENGRAFLQDVAKRMHLRSVEDWMEVTSSQVNAYGGKGLLVRYSSLLEAVKDL 396
            D    R F+        +   E W +V    I  +GG  L+  H G++  +L   +PE     +R R+  LPT +W D +N RAF++ +  R +++  EDW E+ +  +    G+G +  Y S+ +A++ +
Sbjct:   71 DTRNGRQFLMDFAVRNDLTHYEDWYDVKRIHIVEQGGLKLLQAH-GNMYQVLSAHFPEYKWVLFRFRRLVLPTEYWNDIDNQRAFIEYIIDRHNIQKEEDWNEIFTQDLIKSNGRGFIRLYPSMRDALRTI 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90964.21085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X0LM56_9BACT1.690e-1729.74Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
A0A7S4INR8_9EUKA4.340e-1230.22Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4M3I1_9EUKA1.510e-1025.41Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4M5H6_9EUKA5.120e-827.48Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90964contigM-pyrifera_M_contig90964:86..700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size585
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.8691204-UTR-M-pyrifera_M_contig90964:85..1151622816821.8691204-UTR-M-pyrifera_M_contig90964:85..115Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90964 86..115 +
1692278198.538577-UTR-M-pyrifera_M_contig90964:85..1151692278198.538577-UTR-M-pyrifera_M_contig90964:85..115Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90964 86..115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.8799572-CDS-M-pyrifera_M_contig90964:115..7001622816821.8799572-CDS-M-pyrifera_M_contig90964:115..700Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90964 116..700 +
1692278198.5528913-CDS-M-pyrifera_M_contig90964:115..7001692278198.5528913-CDS-M-pyrifera_M_contig90964:115..700Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90964 116..700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90964.21085.1prot_M-pyrifera_M_contig90964.21085.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90964 116..700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90964.21085.1

>prot_M-pyrifera_M_contig90964.21085.1 ID=prot_M-pyrifera_M_contig90964.21085.1|Name=mRNA_M-pyrifera_M_contig90964.21085.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MDRVKADLQIDSEEGWRNVTARDIARRGGRGLIDRHRGSVLALLQNCYPE
APPTPWRCRKKLPTGFWEDRENGRAFLQDVAKRMHLRSVEDWMEVTSSQV
NAYGGKGLLVRYSSLLEAVKDLVDGTENLSLDSPCAAARGQWSNKEYRRG
FLERLADAHGVKSAGDWKKLGLKDVRDAGGGALLGWYGGSLRTAL
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mRNA from alignment at M-pyrifera_M_contig90964:86..700+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90964.21085.1 ID=mRNA_M-pyrifera_M_contig90964.21085.1|Name=mRNA_M-pyrifera_M_contig90964.21085.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig90964:86..700+ (Macrocystis pyrifera P11B4 male)
CTGTGGGACGCAGCAAAAGAGAGGGCATTCATGGATAGAGTGAAAGCAGA
CCTTCAGATTGATAGCGAAGAGGGGTGGAGGAACGTCACAGCGCGAGATA
TCGCCAGGAGAGGAGGGAGGGGGCTCATCGACCGCCACAGGGGCTCCGTG
CTGGCTCTGCTGCAGAACTGCTACCCTGAGGCACCCCCGACTCCTTGGAG
GTGCAGAAAGAAGCTCCCTACAGGTTTTTGGGAGGACAGGGAGAATGGCA
GAGCATTCCTTCAGGATGTGGCGAAGCGAATGCACTTGAGGAGCGTCGAG
GATTGGATGGAGGTCACTTCCTCCCAGGTGAATGCCTATGGCGGAAAGGG
ACTGCTTGTGAGGTACTCTTCACTCCTTGAGGCTGTGAAAGACCTCGTGG
ATGGCACTGAGAATCTCTCTCTCGACTCCCCTTGCGCAGCCGCTCGAGGA
CAGTGGAGTAACAAAGAGTACCGCAGAGGCTTCCTCGAGAGACTGGCAGA
CGCGCATGGTGTCAAAAGCGCTGGAGATTGGAAGAAATTGGGCCTCAAGG
ATGTGAGGGATGCGGGAGGGGGCGCACTCCTCGGGTGGTATGGCGGATCT
CTTCGGACAGCTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90964:86..700+

>mRNA_M-pyrifera_M_contig90964.21085.1 ID=mRNA_M-pyrifera_M_contig90964.21085.1|Name=mRNA_M-pyrifera_M_contig90964.21085.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig90964:86..700+ (Macrocystis pyrifera P11B4 male)
ATGGATAGAGTGAAAGCAGACCTTCAGATTGATAGCGAAGAGGGGTGGAG
GAACGTCACAGCGCGAGATATCGCCAGGAGAGGAGGGAGGGGGCTCATCG
ACCGCCACAGGGGCTCCGTGCTGGCTCTGCTGCAGAACTGCTACCCTGAG
GCACCCCCGACTCCTTGGAGGTGCAGAAAGAAGCTCCCTACAGGTTTTTG
GGAGGACAGGGAGAATGGCAGAGCATTCCTTCAGGATGTGGCGAAGCGAA
TGCACTTGAGGAGCGTCGAGGATTGGATGGAGGTCACTTCCTCCCAGGTG
AATGCCTATGGCGGAAAGGGACTGCTTGTGAGGTACTCTTCACTCCTTGA
GGCTGTGAAAGACCTCGTGGATGGCACTGAGAATCTCTCTCTCGACTCCC
CTTGCGCAGCCGCTCGAGGACAGTGGAGTAACAAAGAGTACCGCAGAGGC
TTCCTCGAGAGACTGGCAGACGCGCATGGTGTCAAAAGCGCTGGAGATTG
GAAGAAATTGGGCCTCAAGGATGTGAGGGATGCGGGAGGGGGCGCACTCC
TCGGGTGGTATGGCGGATCTCTTCGGACAGCTCTCATGGATAGAGTGAAA
GCAGACCTTCAGATTGATAGCGAAGAGGGGTGGAGGAACGTCACAGCGCG
AGATATCGCCAGGAGAGGAGGGAGGGGGCTCATCGACCGCCACAGGGGCT
CCGTGCTGGCTCTGCTGCAGAACTGCTACCCTGAGGCACCCCCGACTCCT
TGGAGGTGCAGAAAGAAGCTCCCTACAGGTTTTTGGGAGGACAGGGAGAA
TGGCAGAGCATTCCTTCAGGATGTGGCGAAGCGAATGCACTTGAGGAGCG
TCGAGGATTGGATGGAGGTCACTTCCTCCCAGGTGAATGCCTATGGCGGA
AAGGGACTGCTTGTGAGGTACTCTTCACTCCTTGAGGCTGTGAAAGACCT
CGTGGATGGCACTGAGAATCTCTCTCTCGACTCCCCTTGCGCAGCCGCTC
GAGGACAGTGGAGTAACAAAGAGTACCGCAGAGGCTTCCTCGAGAGACTG
GCAGACGCGCATGGTGTCAAAAGCGCTGGAGATTGGAAGAAATTGGGCCT
CAAGGATGTGAGGGATGCGGGAGGGGGCGCACTCCTCGGGTGGTATGGCG
GATCTCTTCGGACAGCTCTC
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