mRNA_M-pyrifera_M_contig90961.21084.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90961.21084.1
Unique NamemRNA_M-pyrifera_M_contig90961.21084.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90961.21084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90961contigM-pyrifera_M_contig90961:196..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.8403609-CDS-M-pyrifera_M_contig90961:195..6511622816821.8403609-CDS-M-pyrifera_M_contig90961:195..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90961 196..651 +
1692278198.5185583-CDS-M-pyrifera_M_contig90961:195..6511692278198.5185583-CDS-M-pyrifera_M_contig90961:195..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90961 196..651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90961.21084.1prot_M-pyrifera_M_contig90961.21084.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90961 196..651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90961.21084.1

>prot_M-pyrifera_M_contig90961.21084.1 ID=prot_M-pyrifera_M_contig90961.21084.1|Name=mRNA_M-pyrifera_M_contig90961.21084.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MSNGPIHFAVPREDAKEVFAKNTADDLQSLLFSWRNSKDREQAKLNHASP
ANWRQWHDFFTNELQLSEEDAALAFVFLGGRELPSDQDNVARLIRPDLTA
HVAAALGRIDRQQFTTLLNEQAAPALENLQAFFEASAESRSAVIFYCCAK
Q*
back to top

mRNA from alignment at M-pyrifera_M_contig90961:196..651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90961.21084.1 ID=mRNA_M-pyrifera_M_contig90961.21084.1|Name=mRNA_M-pyrifera_M_contig90961.21084.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig90961:196..651+ (Macrocystis pyrifera P11B4 male)
ATGTCCAACGGCCCCATTCATTTCGCTGTGCCGCGTGAAGACGCAAAAGA
AGTCTTTGCCAAAAACACCGCCGACGATTTGCAGTCGTTGCTGTTTTCCT
GGCGCAATAGCAAAGATCGCGAACAGGCGAAATTGAATCATGCGTCGCCC
GCGAATTGGCGGCAGTGGCACGATTTTTTTACGAACGAACTTCAACTTAG
TGAAGAAGACGCGGCTTTGGCGTTCGTGTTTCTCGGCGGCCGCGAGTTAC
CAAGCGACCAAGACAACGTCGCCCGCCTGATTCGCCCCGATCTTACCGCC
CATGTCGCCGCCGCACTGGGCCGCATCGATCGGCAACAGTTTACAACGCT
GCTCAATGAACAAGCGGCACCAGCGCTCGAAAACTTGCAGGCGTTTTTTG
AAGCCTCAGCCGAATCGCGCAGCGCCGTTATTTTTTATTGTTGTGCGAAG
CAATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90961:196..651+

>mRNA_M-pyrifera_M_contig90961.21084.1 ID=mRNA_M-pyrifera_M_contig90961.21084.1|Name=mRNA_M-pyrifera_M_contig90961.21084.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig90961:196..651+ (Macrocystis pyrifera P11B4 male)
ATGTCCAACGGCCCCATTCATTTCGCTGTGCCGCGTGAAGACGCAAAAGA
AGTCTTTGCCAAAAACACCGCCGACGATTTGCAGTCGTTGCTGTTTTCCT
GGCGCAATAGCAAAGATCGCGAACAGGCGAAATTGAATCATGCGTCGCCC
GCGAATTGGCGGCAGTGGCACGATTTTTTTACGAACGAACTTCAACTTAG
TGAAGAAGACGCGGCTTTGGCGTTCGTGTTTCTCGGCGGCCGCGAGTTAC
CAAGCGACCAAGACAACGTCGCCCGCCTGATTCGCCCCGATCTTACCGCC
CATGTCGCCGCCGCACTGGGCCGCATCGATCGGCAACAGTTTACAACGCT
GCTCAATGAACAAGCGGCACCAGCGCTCGAAAACTTGCAGGCGTTTTTTG
AAGCCTCAGCCGAATCGCGCAGCGCCGTTATTTTTTATTGTTGTGCGAAG
CAATAGATGTCCAACGGCCCCATTCATTTCGCTGTGCCGCGTGAAGACGC
AAAAGAAGTCTTTGCCAAAAACACCGCCGACGATTTGCAGTCGTTGCTGT
TTTCCTGGCGCAATAGCAAAGATCGCGAACAGGCGAAATTGAATCATGCG
TCGCCCGCGAATTGGCGGCAGTGGCACGATTTTTTTACGAACGAACTTCA
ACTTAGTGAAGAAGACGCGGCTTTGGCGTTCGTGTTTCTCGGCGGCCGCG
AGTTACCAAGCGACCAAGACAACGTCGCCCGCCTGATTCGCCCCGATCTT
ACCGCCCATGTCGCCGCCGCACTGGGCCGCATCGATCGGCAACAGTTTAC
AACGCTGCTCAATGAACAAGCGGCACCAGCGCTCGAAAACTTGCAGGCGT
TTTTTGAAGCCTCAGCCGAATCGCGCAGCGCCGTTATTTTTTATTGTTGT
GCGAAGCAATAG
back to top