mRNA_M-pyrifera_M_contig9093.21083.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9093.21083.1
Unique NamemRNA_M-pyrifera_M_contig9093.21083.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9093.21083.1 vs. uniprot
Match: A0A6H5L1S0_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1S0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.810e-26
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:  664 LEDPPEDDSPDKTSVRFQFPTGARVLRKFRKNSDVRQLFLFVRSELGGAETKSFDVRTVRPPTSVR 861
            LEDPP DD  +K SVRFQFPTGARVLRKFRK+SDVRQLFLFVR+EL GA+ K FDVRTVRPP SVR
Sbjct:   19 LEDPPGDDCAEKISVRFQFPTGARVLRKFRKSSDVRQLFLFVRTELEGAKAKPFDVRTVRPPCSVR 84
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BLAST of mRNA_M-pyrifera_M_contig9093.21083.1 vs. uniprot
Match: D7FS95_ECTSI (UBX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS95_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.030e-22
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:  664 LEDPPEDDSPDKTSVRFQFPTGARVLRKFRKNSDVRQLFLFVRSELGGAETKSFDVRTVRPPTSVR 861
            LEDPP DD  +K SVRFQFPTGARVLR+FRK+SDVRQLFLFVR+EL GA+ K FDVRTVRPP SVR
Sbjct:  521 LEDPPGDDCAEKISVRFQFPTGARVLRRFRKSSDVRQLFLFVRTELEGAKAKPFDVRTVRPPCSVR 586
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9093.21083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1S0_9PHAE6.810e-2681.82UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FS95_ECTSI3.030e-2280.30UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9093contigM-pyrifera_M_contig9093:77..2098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog2880.D7FS95
Preferred nameUBXN7
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0012505,GO:0016020,GO:0016604,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030674,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032182,GO:0032991,GO:0034098,GO:0036211,GO:0042175,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051603,GO:0060090,GO:0070013,GO:0071704,GO:0098796,GO:0098827,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin binding
EggNOG OGsKOG1364@1,KOG1364@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-05_004870.1
EC1.1.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size861
Cds size861
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9093.21083.1prot_M-pyrifera_M_contig9093.21083.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9093 77..2098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.771444-CDS-M-pyrifera_M_contig9093:76..2371622816821.771444-CDS-M-pyrifera_M_contig9093:76..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9093 77..237 +
1692278198.4575908-CDS-M-pyrifera_M_contig9093:76..2371692278198.4575908-CDS-M-pyrifera_M_contig9093:76..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9093 77..237 +
1622816821.7821007-CDS-M-pyrifera_M_contig9093:342..4581622816821.7821007-CDS-M-pyrifera_M_contig9093:342..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9093 343..458 +
1692278198.4731727-CDS-M-pyrifera_M_contig9093:342..4581692278198.4731727-CDS-M-pyrifera_M_contig9093:342..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9093 343..458 +
1622816821.794463-CDS-M-pyrifera_M_contig9093:509..9671622816821.794463-CDS-M-pyrifera_M_contig9093:509..967Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9093 510..967 +
1692278198.4848695-CDS-M-pyrifera_M_contig9093:509..9671692278198.4848695-CDS-M-pyrifera_M_contig9093:509..967Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9093 510..967 +
1622816821.8069034-CDS-M-pyrifera_M_contig9093:1972..20981622816821.8069034-CDS-M-pyrifera_M_contig9093:1972..2098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9093 1973..2098 +
1692278198.498487-CDS-M-pyrifera_M_contig9093:1972..20981692278198.498487-CDS-M-pyrifera_M_contig9093:1972..2098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9093 1973..2098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9093.21083.1

>prot_M-pyrifera_M_contig9093.21083.1 ID=prot_M-pyrifera_M_contig9093.21083.1|Name=mRNA_M-pyrifera_M_contig9093.21083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=287bp
QLPPSTGGSEDQMLAAAIAASLDTNSRDGPEESRSDAGGGGSRGSSGSDN
SSSLGAGGVAGVALPTITVDDSDQEDEDFEEEEEEEEEEEEDSSASAAAA
LATAAAAAAAVKGKGKGKGKAWVAGRTVASYSAAGGAAASSASSSGGRVV
MDTGFIPTEGGTAGEVVDVTEEVGEEGRRAVDVSDENGAARSDSQDRSME
KSAGNGCAAAAAGGAEGAGEVLEDPPEDDSPDKTSVRFQFPTGARVLRKF
RKNSDVRQLFLFVRSELGGAETKSFDVRTVRPPTSVR
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mRNA from alignment at M-pyrifera_M_contig9093:77..2098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9093.21083.1 ID=mRNA_M-pyrifera_M_contig9093.21083.1|Name=mRNA_M-pyrifera_M_contig9093.21083.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2022bp|location=Sequence derived from alignment at M-pyrifera_M_contig9093:77..2098+ (Macrocystis pyrifera P11B4 male)
CAGCTACCCCCCTCGACTGGCGGGTCCGAGGACCAGATGTTGGCAGCCGC
CATAGCCGCTTCCTTGGATACGAACTCCCGCGATGGCCCAGAAGAGTCCC
GCTCCGACGCCGGAGGCGGCGGCAGCCGAGGCAGCAGTGGTAGCGATAAT
TCCTCGTCGTTGTCTGTATCCTCTTCCGGAGCGGGGGAGGCGGGAGCGGG
GACAGGGGCGGGGGTGGGGGCGGGGCGAGGTTTAGCCGCTCGCGTCGGCG
GGAGCGGCGGGAGGAGGGGGGCGGGGGGCGTCGCGGGGGTGGCGTTGCCG
ACGATCACCGTCGACGACAGCGACCAAGAGGATGAGGACTTCGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTGTGATGATGACGTTGCCG
TCATTGCGTCGGTAGGTCCCCCCCCGCGACGAGCGTCGGCGTCGGCAGCG
GCAGCGCTTGCGACAGCGGCAGCGGCAGCGGCCGCCGTCAAGGGCAAGGG
AAAAGGGAAAGGAAAGGCGTGGGTTGCGGGGAGAACGGTTGCGTCGTATA
GTGCTGCTGGTGGCGCTGCTGCTTCTTCTGCCAGTTCGAGCGGCGGCAGA
GTCGTGATGGATACGGGGTTTATTCCGACTGAGGGAGGGACTGCTGGCGA
GGTTGTAGACGTAACTGAAGAGGTGGGGGAGGAAGGGAGAAGGGCGGTGG
ATGTATCCGATGAAAACGGAGCGGCGAGGAGCGACAGCCAAGACCGTTCC
ATGGAAAAGTCCGCGGGAAATGGCTGTGCCGCGGCGGCGGCGGGGGGCGC
GGAAGGCGCAGGGGAGGTGTTGGAGGACCCGCCAGAGGACGACAGCCCCG
ACAAAACTAGCGTTCGGTTTCAGTTCCCGACGGGCGCCAGGGTGAGAGAG
GAAAGCGCGTGCGCCAGGAAACAACTAGAGTTCCTGGTGCAATGCTGACG
TTTCACGCGCAGCTCATGTGTGTGTTTTACGCGGCCGTGCCGTGGCACCT
GTATAATTTCGTTCGGCTTCACACCTTTTCTGCCGCTCGGAGCTGCCTTT
TCTCACCCGCAGTCATTCAGTAGTCGCCACACGACAGCAAACTAAAAGAT
GGCCGCGTGCGTGCGTAACTGCTTACGATGACACGCACTGGCTATCGCAG
TAAGTGCCGGAGTTAGTTGTTGATAGTTACGCGTTCAAGCGTGGAGTCGA
CGGTCTCTCGTGTCGTGTACCTCTTTTGCGAATTCAATGAACTCCAACTC
CTCTCGCATGAATAGGTCGTGTATATCTTTTGCGAATGTGATCAATTCAC
TCAATTACGAACACGAAAATTATGATTTCTTCAACCATTTGGGTTAGTTC
TTCAGAGCCTTGGGGTTAATCTCGGCACGAAATTAAATTCCTTCAATCAA
AAACTCAGACTTTGATGCTTCTCCGGATTTTAGCACGAGTCAGTCAGTCA
GGCAACCACGTTTCATCGCTTCAGTTGGTGTACCATTTTGTTTTTTATGG
CCTGGTTAACGCCGTCGCATGTGATGCGCCTCGCGCTTCTGATTGAACAA
AGGGGTCCTTGAAGCGCTTGAAACGTCTAATGATGCCGTGTGGCTTTCGC
GATCGACATCGGAATCGCGAAATGGTTTTAATTCATTTGCGATCATCCGT
GACTTATTTTACCGGCTTTACCGGCCCCGTCACTGGCCGGAGGGGGCGGG
AGGCGGCGGTTGGGGAGCTCGTGGGATGCACTTAGCCGGATGGGGGATTT
GATTGTCGGGTTCGTTGATGATTTGAGAAAGCGCGTCGTCGTCCGTTCGT
TACTCGCCCCTCTGCGGGGTGCGCTTTCGAAACCGGGATCGTCAACCTCT
CCTTCCGTCCATCCCCGCACCCTTCCGTGTGTCTTATCTACGGCAGGTGT
TGAGAAAATTCCGGAAAAATTCCGACGTGCGTCAGCTCTTTCTCTTCGTT
CGGTCGGAGCTGGGTGGGGCGGAGACAAAGTCCTTCGATGTTCGCACCGT
GCGGCCACCGACCTCTGTCAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9093:77..2098+

>mRNA_M-pyrifera_M_contig9093.21083.1 ID=mRNA_M-pyrifera_M_contig9093.21083.1|Name=mRNA_M-pyrifera_M_contig9093.21083.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1722bp|location=Sequence derived from alignment at M-pyrifera_M_contig9093:77..2098+ (Macrocystis pyrifera P11B4 male)
CAGCTACCCCCCTCGACTGGCGGGTCCGAGGACCAGATGTTGGCAGCCGC
CATAGCCGCTTCCTTGGATACGAACTCCCGCGATGGCCCAGAAGAGTCCC
GCTCCGACGCCGGAGGCGGCGGCAGCCGAGGCAGCAGTGGTAGCGATAAT
TCCTCGTCGTTCAGCTACCCCCCTCGACTGGCGGGTCCGAGGACCAGATG
TTGGCAGCCGCCATAGCCGCTTCCTTGGATACGAACTCCCGCGATGGCCC
AGAAGAGTCCCGCTCCGACGCCGGAGGCGGCGGCAGCCGAGGCAGCAGTG
GTAGCGATAATTCCTCGTCGTTGGGGGCGGGGGGCGTCGCGGGGGTGGCG
TTGCCGACGATCACCGTCGACGACAGCGACCAAGAGGATGAGGACTTCGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTGGGGGCGGGGGG
CGTCGCGGGGGTGGCGTTGCCGACGATCACCGTCGACGACAGCGACCAAG
AGGATGAGGACTTCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GATTCGTCGGCGTCGGCAGCGGCAGCGCTTGCGACAGCGGCAGCGGCAGC
GGCCGCCGTCAAGGGCAAGGGAAAAGGGAAAGGAAAGGCGTGGGTTGCGG
GGAGAACGGTTGCGTCGTATAGTGCTGCTGGTGGCGCTGCTGCTTCTTCT
GCCAGTTCGAGCGGCGGCAGAGTCGTGATGGATACGGGGTTTATTCCGAC
TGAGGGAGGGACTGCTGGCGAGGTTGTAGACGTAACTGAAGAGGTGGGGG
AGGAAGGGAGAAGGGCGGTGGATGTATCCGATGAAAACGGAGCGGCGAGG
AGCGACAGCCAAGACCGTTCCATGGAAAAGTCCGCGGGAAATGGCTGTGC
CGCGGCGGCGGCGGGGGGCGCGGAAGGCGCAGGGGAGGTGTTGGAGGACC
CGCCAGAGGACGACAGCCCCGACAAAACTAGCGTTCGGTTTCAGTTCCCG
ACGGGCGCCAGGCGTCGGCGTCGGCAGCGGCAGCGCTTGCGACAGCGGCA
GCGGCAGCGGCCGCCGTCAAGGGCAAGGGAAAAGGGAAAGGAAAGGCGTG
GGTTGCGGGGAGAACGGTTGCGTCGTATAGTGCTGCTGGTGGCGCTGCTG
CTTCTTCTGCCAGTTCGAGCGGCGGCAGAGTCGTGATGGATACGGGGTTT
ATTCCGACTGAGGGAGGGACTGCTGGCGAGGTTGTAGACGTAACTGAAGA
GGTGGGGGAGGAAGGGAGAAGGGCGGTGGATGTATCCGATGAAAACGGAG
CGGCGAGGAGCGACAGCCAAGACCGTTCCATGGAAAAGTCCGCGGGAAAT
GGCTGTGCCGCGGCGGCGGCGGGGGGCGCGGAAGGCGCAGGGGAGGTGTT
GGAGGACCCGCCAGAGGACGACAGCCCCGACAAAACTAGCGTTCGGTTTC
AGTTCCCGACGGGCGCCAGGGTGTTGAGAAAATTCCGGAAAAATTCCGAC
GTGCGTCAGCTCTTTCTCTTCGTTCGGTCGGAGCTGGGTGGGGCGGAGAC
AAAGTCCTTCGATGTTCGCACCGTGCGGCCACCGACCTCTGTCAGGGTGT
TGAGAAAATTCCGGAAAAATTCCGACGTGCGTCAGCTCTTTCTCTTCGTT
CGGTCGGAGCTGGGTGGGGCGGAGACAAAGTCCTTCGATGTTCGCACCGT
GCGGCCACCGACCTCTGTCAGG
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