mRNA_M-pyrifera_M_contig90914.21078.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90914.21078.1
Unique NamemRNA_M-pyrifera_M_contig90914.21078.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: A0A812JBM3_9DINO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JBM3_9DINO)

HSP 1 Score: 145 bits (367), Expect = 6.730e-37
Identity = 81/205 (39.51%), Postives = 112/205 (54.63%), Query Frame = 1
Query:    1 RYDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAKEAYLLFYVRR--------PRIQPPKLPRPPASLKTPFCFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDP--------LLHVMPITKEQATILVKTYGRQDALIPHPLQACPRCKSEAKSLRLRRRHELRAIQSVDTKHVDRDRGD 567
             YDLVS VQH+G M GGHY+AYG+  T+ +W  FND  VT+ +   VA +EAY+LF+ RR        P   PP  P   ++     C+VS  WWLR +  + PGP+T+ +V CPHG +R  LL +              ++P+T+ Q   LV T+GRQ   + +    CP C  EA++L  RRR E   I  VD+K +    GD
Sbjct:  587 EYDLVSFVQHMGTMSGGHYIAYGKEPTEGRWRCFNDEYVTDASASTVAGQEAYILFFTRRRVAPSAPLPMAMPPADPSRDSTAV--HCWVSARWWLRYRVFSCPGPITSYDVVCPHGRIRNNLLENFTDASTGRLSIFSFLVPLTETQWAALVATFGRQGPPV-YDASPCPACALEAEALAARRRAEATTISRVDSKSLPSATGD 788          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: A0A5A8DXH9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DXH9_CAFRO)

HSP 1 Score: 145 bits (367), Expect = 6.790e-37
Identity = 81/205 (39.51%), Postives = 112/205 (54.63%), Query Frame = 1
Query:    1 RYDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAKEAYLLFYVRR--------PRIQPPKLPRPPASLKTPFCFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDP--------LLHVMPITKEQATILVKTYGRQDALIPHPLQACPRCKSEAKSLRLRRRHELRAIQSVDTKHVDRDRGD 567
             YDLVS VQH+G M GGHY+AYG+  T+ +W  FND  VT+ +   VA +EAY+LF+ RR        P   PP  P   ++     C+VS  WWLR +  + PGP+T+ +V CPHG +R  LL +              ++P+T+ Q   LV T+GRQ   + +    CP C  EA++L  RRR E   I  VD+K +    GD
Sbjct:  666 EYDLVSFVQHMGTMSGGHYIAYGKEPTEGRWRCFNDEYVTDASASTVAGQEAYILFFTRRRVAPSAPLPMAMPPADPSRDSTAV--HCWVSARWWLRYRVFSCPGPITSYDVVCPHGRIRNNLLENFTDASTGRLSIFSFLVPLTEAQWAALVATFGRQGPPV-YDASPCPACALEAEALAARRRAEATTISRVDSKSLPSATGD 867          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: A0A2H9TGK3_9FUNG (Ubiquitinyl hydrolase 1 n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TGK3_9FUNG)

HSP 1 Score: 110 bits (275), Expect = 1.400e-24
Identity = 72/205 (35.12%), Postives = 102/205 (49.76%), Query Frame = 1
Query:    1 RYDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAKEAYLLFY------VRRPRIQPPKLPRPPASLKTPFCFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDPLLHVMPITKEQATILVKTYGRQDALIP--HPLQACPRCKSEAKSLRLRRRHELRAIQSVDTKHVDRDRGDEDGCWYLM 591
            RY L SV+ H G   GGHYVAY R     +W  F+DS+VT ++   VA  +AY LFY       RR R +   +       +T   ++SR W+ R  + A+PGP+  +E+ CPHGYL    L     L+  +PI    A  L   +G    + P   P+  C +C  E K+L  RR+ E + IQS+DT  +          WYL+
Sbjct:  521 RYYLSSVISHRGTFSGGHYVAYCRSLAAGQWLEFDDSTVTVVSEEEVAKVQAYTLFYSLVDWNARREREEWVSIISEAKPEETDGVYISREWYNRWCTMAEPGPLDNSELVCPHGYLSCEALVDPVELVQFLPIDAYNA--LSSRHGEVSEIAPLKSPV-VCAQCIEEEKALDARRKQEEKDIQSLDTSAIKPGE-----FWYLI 717          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: A0A1S8WKT2_9TREM (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Opisthorchis viverrini TaxID=6198 RepID=A0A1S8WKT2_9TREM)

HSP 1 Score: 99.4 bits (246), Expect = 1.110e-20
Identity = 61/187 (32.62%), Postives = 91/187 (48.66%), Query Frame = 1
Query:    4 YDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVA--AKEAYLLFYVRRPRIQPP-------KLPRPPASLKTPFCFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDPLLHVMPITKEQATILVKTYGRQDALI-PHPLQACPRCKSEAKSLRLRRRHELRAIQSV 534
            +DL+SV+ H G  GGGHYV Y      + WY F+D  VT++    V     +AY+LFY +R     P        L +      T   F+SR+W++R  + A+PGP+  AE  C HG  +     H D LL  +PI  E  T L+  +G    L  P P   C       +++ +R+R EL+  + +
Sbjct:  489 FDLISVICHRGGYGGGHYVTYSLNAYTQSWYEFDDDHVTQVPAFHVEQLTSDAYILFYRKRDTALVPLRREAALMLQKEVVPESTRIVFLSRAWFVRFSTWAEPGPIDNAEFLCEHGQFKPTQWNHRDSLL--VPIPHELWTKLLSVFGGGPVLRNPSPCSVCH------EAIIMRQRSELQTFEKL 667          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: A0A4S2LF68_OPIFE (Ubiquitinyl hydrolase 1 n=4 Tax=Opisthorchiidae TaxID=6196 RepID=A0A4S2LF68_OPIFE)

HSP 1 Score: 97.4 bits (241), Expect = 5.210e-20
Identity = 60/187 (32.09%), Postives = 90/187 (48.13%), Query Frame = 1
Query:    4 YDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVA--AKEAYLLFYVRRPRIQPP-------KLPRPPASLKTPFCFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDPLLHVMPITKEQATILVKTYGRQDALI-PHPLQACPRCKSEAKSLRLRRRHELRAIQSV 534
            +DL+SV+ H G  GGGHYV Y      + WY F+D  VT++    V     EAY+LFY +R     P        L +      T   F+SR+W++R  + A+PGP+   E  C HG  +     H D L  V+PI  +  T L+  +G    L  P P   C       +++ +R+R EL+  + +
Sbjct:  596 FDLISVICHRGGYGGGHYVTYSLNAYTQSWYEFDDDHVTQVPAFHVEQLTSEAYILFYRKRDTALVPLRREAALMLQKEVVPESTRIVFLSRAWFVRFSTWAEPGPIDNTEFLCEHGQFKPTQWNHRDSL--VVPIPHDLWTKLLAVFGGGPVLRNPSPCSVCH------EAIIIRQRSELQTFEKL 774          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: UPI001E1E172C (ubiquitin carboxyl-terminal hydrolase 33 isoform X1 n=3 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1E172C)

HSP 1 Score: 93.6 bits (231), Expect = 1.090e-18
Identity = 60/191 (31.41%), Postives = 98/191 (51.31%), Query Frame = 1
Query:    4 YDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAKEAYLLFYVRRPRIQPPKLPRPPASLKTPF------CFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDPLLHVMPITKEQATILVKTYGRQDALIPHPLQACPRCKSEAKSLRLRRRHELRAIQSVDTKHVDRD 558
            YDL+SV+ H G    GHY+A+ R   +K+WY F+D SVTE++   V   EAY+LFY R+   +  K  R  A+L           ++SR W  + ++ A+PGP++  +  C HG +  R   + + L+ ++P  +     L   YG   A+  + L  C  C+ EA+ +  RR+ EL     ++    + D
Sbjct:  614 YDLLSVICHHGTASSGHYIAFCRNNLNKRWYEFDDQSVTEVSESTVQNAEAYVLFY-RKSSEEAHKERRRIANLLNIMEPSLLQFYISRQWLNKFKTFAEPGPISNNDFLCIHGGVPPRKASYIEDLVLMLP--QNIWDNLYSRYGGGPAV--NHLYICHTCQIEAERIEKRRKAELEIFIRLNRAFQEED 799          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: A0A6I9IWQ6_CHRAS (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9IWQ6_CHRAS)

HSP 1 Score: 93.6 bits (231), Expect = 1.090e-18
Identity = 58/191 (30.37%), Postives = 97/191 (50.79%), Query Frame = 1
Query:    4 YDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAKEAYLLFY------VRRPRIQPPKLPRPPASLKTPFCFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDPLLHVMPITKEQATILVKTYGRQDALIPHPLQACPRCKSEAKSLRLRRRHELRAIQSVDTKHVDRD 558
            YDL+SV+ H G    GHY+AY R   +K+WY F+D SVT+++   +   EAY+LFY       ++ R++   L          F +VSR W  + ++ A+PGP++  +  C HG +  R   + + L+ ++P  +     L   YG   A+  + L  C  C+ EA+ +  RR+ EL     ++    + D
Sbjct:  624 YDLLSVICHHGTASSGHYIAYCRNNLNKRWYEFDDQSVTQVSESTIQNVEAYVLFYRKSSEEAQKERLRISNLLNIVEPSLLQF-YVSRQWLNKFKTFAEPGPISNNDFLCIHGGIPPRKANYIEDLVLMLP--QNIWDNLYSRYGGGPAV--NHLYICHTCQIEAEKIEKRRKTELEIFIRLNKAFQEED 809          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: A0A6J2VAF5_CHACN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VAF5_CHACN)

HSP 1 Score: 93.2 bits (230), Expect = 1.480e-18
Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 1
Query:    4 YDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAKEAYLLFYVR--------RPRIQPPKLPRPPASLKTPFCFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDPLLHVMPITKEQATILVKTYGRQDALIPHPLQACPRCKSEAKSLRLRRRHEL 516
            YDL+SV+ H G    GHY+AY R   ++ WY F+D SVTE++   V   EAY+LFY +        R R+        P+ L+    +VSR W+ + ++ A+PGP++  +  C HG +      + + L+ ++P T      L   YG   A+  + L  C  C++E + L  RR++EL
Sbjct:  619 YDLLSVICHHGTASSGHYIAYCRNDQNQLWYEFDDQSVTEVSESCVQNAEAYVLFYKKSNEDAQKERRRVSGLLNMMEPSLLQF---YVSRQWFNKFRTFAEPGPISNNDFLCAHGGVPPHKASYINDLVVMLPQTVWDH--LYSRYGGGPAV--NHLYVCHTCQTEIEKLEKRRKNEL 790          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: UPI001401E872 (ubiquitin carboxyl-terminal hydrolase 33 isoform X1 n=7 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001401E872)

HSP 1 Score: 92.4 bits (228), Expect = 2.800e-18
Identity = 63/180 (35.00%), Postives = 90/180 (50.00%), Query Frame = 1
Query:    4 YDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAKEAYLLFYVR------RPRIQPPKLPRPPASLKTPFC---FVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRLLRHEDPLLHVMPITKEQATILVKTYGRQDALIPHPLQACPRCKSEAKSLRLRRRHEL 516
            YDL+SV+ H G  G GHYVAY +   + +WY F+D  VTE+    V   EAY+LFY +      R R +   L    A LK P     ++SR W  RL + A+PGP+T  +  C HG +      + D L+ ++P  +     L   YG   A+  + L  C  C+ E   L  RR+ E+
Sbjct:  672 YDLLSVICHHGTAGSGHYVAYCQNVINGQWYEFDDQCVTEVHETVVQNAEAYVLFYRKSNEEAMRERQKVMSL----AGLKEPSLLEFYISRQWLNRLNTFAEPGPITNQDFLCSHGGVPPHKSSYIDDLVVILP--QNVWDYLYNRYGGGPAV--NHLYVCSVCQVEIDRLERRRKTEM 843          
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Match: A0A0G4GUR1_9ALVE (Ubiquitinyl hydrolase 1 n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GUR1_9ALVE)

HSP 1 Score: 92.4 bits (228), Expect = 2.930e-18
Identity = 67/229 (29.26%), Postives = 101/229 (44.10%), Query Frame = 1
Query:    4 YDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAKEAYLLFYVRRPRIQPPKLPRPPASLKTPF-----------------------------CFVSRSWWLRLQSGADPGPVTAAEVACPHGYLRQRL---LRHEDPLLHVMPITKEQATILVKTYGRQDALIPHPLQACPRCKSEAKSL--RLRRRHELRAIQSVDTKHVDRDRGDEDGCWYL 588
            Y+LV ++QHIG +GGGHY+AY R    K+W+ F+D+ VT + P  V   EAY+LF+ R   + PP + R    +K                                 ++ + W+ +L  G+ PGP+  ++  C HG L   L     +E    H  P+T      L+K YG      P P ++   C  E  SL  RL +R ++     +   H  +D G     WYL
Sbjct:  700 YELVGLIQHIGSLGGGHYIAYCRHWKSKQWFEFDDNRVTPVPPDTVEKAEAYVLFFHR---VCPPSIARDRQKVKEAHREAIRMLEKRGQRENMDAIDLFEAETEGVSWLPKIWYNKLTGGSFPGPLDFSQSLCEHGMLHYNLDPEELYEKKRYHFKPVTTACMEFLLKRYGIVCKPQPRPPKSLRAC-DECLSLIHRLIKRRQVE--YDLVAAHDTKDTG-LGNFWYL 921          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90914.21078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812JBM3_9DINO6.730e-3739.51Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Symb... [more]
A0A5A8DXH9_CAFRO6.790e-3739.51Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A2H9TGK3_9FUNG1.400e-2435.12Ubiquitinyl hydrolase 1 n=1 Tax=Paramicrosporidium... [more]
A0A1S8WKT2_9TREM1.110e-2032.62Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Opistho... [more]
A0A4S2LF68_OPIFE5.210e-2032.09Ubiquitinyl hydrolase 1 n=4 Tax=Opisthorchiidae Ta... [more]
UPI001E1E172C1.090e-1831.41ubiquitin carboxyl-terminal hydrolase 33 isoform X... [more]
A0A6I9IWQ6_CHRAS1.090e-1830.37Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Chry... [more]
A0A6J2VAF5_CHACN1.480e-1832.96Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chan... [more]
UPI001401E8722.800e-1835.00ubiquitin carboxyl-terminal hydrolase 33 isoform X... [more]
A0A0G4GUR1_9ALVE2.930e-1829.26Ubiquitinyl hydrolase 1 n=1 Tax=Chromera velia CCM... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90914contigM-pyrifera_M_contig90914:1..591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score105.9
Seed ortholog evalue2.2e-20
Seed eggNOG ortholog588596.U9TVG7
Preferred nameUSP20
KEGG koko:K11848
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000153,GO:0000226,GO:0000902,GO:0000904,GO:0001664,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005912,GO:0005924,GO:0005925,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008270,GO:0008277,GO:0009056,GO:0009057,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009966,GO:0009987,GO:0009991,GO:0010506,GO:0010646,GO:0012505,GO:0015630,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0017016,GO:0017160,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0021551,GO:0022008,GO:0022402,GO:0023051,GO:0030030,GO:0030054,GO:0030055,GO:0030154,GO:0030163,GO:0030182,GO:0030891,GO:0031023,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031647,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032091,GO:0032092,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0036211,GO:0036459,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048468,GO:0048471,GO:0048583,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051020,GO:0051098,GO:0051099,GO:0051100,GO:0051179,GO:0051298,GO:0051603,GO:0051674,GO:0051716,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070161,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0097485,GO:0101005,GO:0120036,GO:0120039,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904888,GO:1990234
EggNOG free text desc.ubiquitin
EggNOG OGs39RU8@33154,COG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816821.592819-CDS-M-pyrifera_M_contig90914:0..5911622816821.592819-CDS-M-pyrifera_M_contig90914:0..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90914 1..591 -
1692278198.380197-CDS-M-pyrifera_M_contig90914:0..5911692278198.380197-CDS-M-pyrifera_M_contig90914:0..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90914 1..591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90914.21078.1prot_M-pyrifera_M_contig90914.21078.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90914 1..591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90914.21078.1

>prot_M-pyrifera_M_contig90914.21078.1 ID=prot_M-pyrifera_M_contig90914.21078.1|Name=mRNA_M-pyrifera_M_contig90914.21078.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
RYDLVSVVQHIGMMGGGHYVAYGRRRTDKKWYHFNDSSVTEIAPGRVAAK
EAYLLFYVRRPRIQPPKLPRPPASLKTPFCFVSRSWWLRLQSGADPGPVT
AAEVACPHGYLRQRLLRHEDPLLHVMPITKEQATILVKTYGRQDALIPHP
LQACPRCKSEAKSLRLRRRHELRAIQSVDTKHVDRDRGDEDGCWYLM
back to top

mRNA from alignment at M-pyrifera_M_contig90914:1..591-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90914.21078.1 ID=mRNA_M-pyrifera_M_contig90914.21078.1|Name=mRNA_M-pyrifera_M_contig90914.21078.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig90914:1..591- (Macrocystis pyrifera P11B4 male)
CGCTACGACTTGGTGTCAGTTGTACAACATATTGGAATGATGGGTGGAGG ACACTATGTTGCGTATGGACGCAGACGAACAGACAAGAAGTGGTATCATT TCAATGATAGTTCTGTGACTGAAATTGCACCAGGTCGAGTTGCGGCAAAA GAAGCATACCTTCTCTTTTACGTCCGCCGTCCACGAATTCAACCACCAAA ACTCCCACGCCCACCGGCTTCACTGAAAACACCGTTCTGTTTTGTATCAC GTTCGTGGTGGTTGCGTCTCCAAAGTGGTGCAGATCCTGGACCTGTCACT GCAGCAGAAGTCGCTTGTCCTCATGGATACCTGCGGCAACGTTTGCTACG CCATGAAGATCCTCTCTTGCATGTGATGCCAATCACAAAAGAACAAGCAA CAATACTTGTCAAGACCTATGGCAGGCAAGATGCACTCATCCCACATCCA CTTCAAGCTTGTCCACGTTGCAAGAGTGAAGCCAAATCTCTACGTCTTCG TCGACGTCATGAATTGCGTGCAATTCAAAGTGTTGATACCAAACATGTGG ATCGTGATCGAGGAGATGAAGATGGATGTTGGTATTTGATG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90914:1..591-

>mRNA_M-pyrifera_M_contig90914.21078.1 ID=mRNA_M-pyrifera_M_contig90914.21078.1|Name=mRNA_M-pyrifera_M_contig90914.21078.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig90914:1..591- (Macrocystis pyrifera P11B4 male)
CGCTACGACTTGGTGTCAGTTGTACAACATATTGGAATGATGGGTGGAGG
ACACTATGTTGCGTATGGACGCAGACGAACAGACAAGAAGTGGTATCATT
TCAATGATAGTTCTGTGACTGAAATTGCACCAGGTCGAGTTGCGGCAAAA
GAAGCATACCTTCTCTTTTACGTCCGCCGTCCACGAATTCAACCACCAAA
ACTCCCACGCCCACCGGCTTCACTGAAAACACCGTTCTGTTTTGTATCAC
GTTCGTGGTGGTTGCGTCTCCAAAGTGGTGCAGATCCTGGACCTGTCACT
GCAGCAGAAGTCGCTTGTCCTCATGGATACCTGCGGCAACGTTTGCTACG
CCATGAAGATCCTCTCTTGCATGTGATGCCAATCACAAAAGAACAAGCAA
CAATACTTGTCAAGACCTATGGCAGGCAAGATGCACTCATCCCACATCCA
CTTCAAGCTTGTCCACGTTGCAAGAGTGAAGCCAAATCTCTACGTCTTCG
TCGACGTCATGAATTGCGTGCAATTCAAAGTGTTGATACCAAACATGTGG
ATCGTGATCGAGGAGATGAAGATGGATGTTGGTATTTGATGCGCTACGAC
TTGGTGTCAGTTGTACAACATATTGGAATGATGGGTGGAGGACACTATGT
TGCGTATGGACGCAGACGAACAGACAAGAAGTGGTATCATTTCAATGATA
GTTCTGTGACTGAAATTGCACCAGGTCGAGTTGCGGCAAAAGAAGCATAC
CTTCTCTTTTACGTCCGCCGTCCACGAATTCAACCACCAAAACTCCCACG
CCCACCGGCTTCACTGAAAACACCGTTCTGTTTTGTATCACGTTCGTGGT
GGTTGCGTCTCCAAAGTGGTGCAGATCCTGGACCTGTCACTGCAGCAGAA
GTCGCTTGTCCTCATGGATACCTGCGGCAACGTTTGCTACGCCATGAAGA
TCCTCTCTTGCATGTGATGCCAATCACAAAAGAACAAGCAACAATACTTG
TCAAGACCTATGGCAGGCAAGATGCACTCATCCCACATCCACTTCAAGCT
TGTCCACGTTGCAAGAGTGAAGCCAAATCTCTACGTCTTCGTCGACGTCA
TGAATTGCGTGCAATTCAAAGTGTTGATACCAAACATGTGGATCGTGATC
GAGGAGATGAAGATGGATGTTGGTATTTGATG
back to top