mRNA_M-pyrifera_M_contig90569.21001.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90569.21001.1
Unique NamemRNA_M-pyrifera_M_contig90569.21001.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig90569.21001.1 vs. uniprot
Match: A0A7S1CQE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQE6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.080e-15
Identity = 70/220 (31.82%), Postives = 107/220 (48.64%), Query Frame = 1 
Query:   94 RTKLRSFIFAFYFFCFLWALLRATFW-LGAGGVFDMSAWGVEGLFFLFWLPTSVQFCVFSLLAVFYVKILAEQRWKTVWRARAYSTYLLTNALLLLLTLLWAVLAGGGNGQHSELW-----QNIFLGFSAFLFAGLAALVAACAVLLARAPPRTRARAFIFQPRRLLLINILLALIFLARAVWNFLSAFNTVTLDVPLAPGADVTPVGF-WLYTLWEFVP 732
            R K  SF   F   C++WA+LR  FW L      D+ A     L+ + WLP +VQF VF LLA+F++K+L    W+ + R   ++  + T+  L ++ +L   ++   N     +      QN  L  +  +F  LA L A     L        AR F+ + + + L+N+ L LIF  R+++N   A   V  D+P+A  + VT VG   LY  WE  P
Sbjct:   31 RHKRLSFKAGFNGLCWVWAVLRCVFWVLMITSKDDLPA---GALYVMLWLPQTVQFAVFCLLALFFLKVLHFSTWRRIRRPWYFAAGIATSLYLAVVVVLAVWISVPDNDDDDPMAEVNRIQNAELAINGSIFLLLAGLFAYLGRSLWTLDHAKYARMFLLEQKTVALVNMCLFLIFTCRSIFNIAEALGAV--DLPIASSSTVTNVGVVLLYETWEVFP 245
[Close]
BLAST of mRNA_M-pyrifera_M_contig90569.21001.1 vs. uniprot
Match: F4PLR5_CAVFA (DUF1084 domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLR5_CAVFA)

HSP 1 Score: 73.2 bits (178), Expect = 2.240e-11
Identity = 55/213 (25.82%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:  109 SFIFAFYFFCFLWALLRATFWLGAGGVFDMSAWGVEGLFFLFWLPTSVQFCVFSLLAVFYVKILAEQRWKTVWRARAYSTYLLTNALLLLLTLLWA-----VLAGGGNGQHSELWQNIFLGFSAFLFAGLAALVAACAVLLARAPPRTRARAFIFQPRRLLLINILLALIFLARAVWNFLSAFNTVTLDVPLAPGADVTPVGFWLYTLWEFVP 732
            +F F F    F W L+RA FW    G F      +     L+W+P ++QF  ++LL +FY  ++    W+ + + R    Y   N +LL+L  +W       +      Q + + Q  F+  +  +F  L +++A     L+     T+       P  ++ I  ++ L F +R ++NF+SAF  V++D+    G D++ +    Y +WE +P
Sbjct:   40 AFRFGFLLLGFFWGLIRAIFW----GTFYRWEGNLTSSI-LYWIPVNIQFATYALLVLFYAHVVHRNSWERITKKRFTIAYAAVNIILLILQCIWIGIDYRYIENPNLNQPAWINQIQFV-LTGIVFLILVSILAFYGWKLSHEIKSTKNALQSQLPLSIIPITFVIFLCFTSRCIYNFVSAFGNVSIDLDSKSGKDISII-LLSYLMWEILP 245
[Close]
BLAST of mRNA_M-pyrifera_M_contig90569.21001.1 vs. uniprot
Match: A0A3P3YAK4_PLABS (DUF1084 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YAK4_PLABS)

HSP 1 Score: 72.4 bits (176), Expect = 3.770e-11
Identity = 60/217 (27.65%), Postives = 102/217 (47.00%), Query Frame = 1 
Query:   94 RTKLRSFIFAFYFFCFLWALLRATFWLGAGGVFDMSAWGVEGLFFLFWLPTSVQFCVFSLLAVFYVKILAEQRWKTVWRARAYSTYLLTNALLLLLTLLWAVLA---GGGNGQHSELWQNIFLGFSAFLFAGLAALVAACAVLLARAPPRTRARAFIFQPRRLLLINILLALIFLARAVWNFLSAFNTVTLDVPLAPGAD-VTPVGFWLYTLWEFVP 732
            R  L SF  AF     LW +LR  F++G     D++         L+W+P  +QF  FSL+ +FY  ++ E+ W  V R      Y L N  +L LT ++ +L+   G       E   ++F+     +     A      +L + +P +         PR +L I I+  LIF++R V+NFL+ F+ + + +    G   ++ + F+L  +WE +P
Sbjct:   31 RHSLFSFQTAFLTIGLLWTVLRVLFFIGPTDRPDVAD------LCLYWVPIDLQFATFSLVCMFYAFLVYERMWLHV-RHFYRIMYALANGTVLALTTVYIILSWKHGVDPSSDLEKTHHLFMSLQFLILVITYAYYGVRLMLASSSPDKPANNLRKLSPRMILSITIMTWLIFVSRCVFNFLTTFDVIQVQIGSENGKRYISGLAFFLLFIWEVIP 240
[Close]
BLAST of mRNA_M-pyrifera_M_contig90569.21001.1 vs. uniprot
Match: A0A0G4IV73_PLABS (DUF1084 domain-containing protein (Fragment) n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IV73_PLABS)

HSP 1 Score: 59.7 bits (143), Expect = 7.910e-7
Identity = 45/168 (26.79%), Postives = 80/168 (47.62%), Query Frame = 1 
Query:  241 PTSVQFCVFSLLAVFYVKILAEQRWKTVWRARAYSTYLLTNALLLLLTLLWAVLA---GGGNGQHSELWQNIFLGFSAFLFAGLAALVAACAVLLARAPPRTRARAFIFQPRRLLLINILLALIFLARAVWNFLSAFNTVTLDVPLAPGAD-VTPVGFWLYTLWEFVP 732
            P  +QF  FSL+ +FY  ++ E+ W  V R      Y L N  +L LT ++ +L+   G       E   ++F+     +     A      +L + +P +         PR +L I I+  LIF++R V+NFL+ F+ + + +    G   ++ + F+L  +WE +P
Sbjct:   48 PIDLQFATFSLVCMFYAFLVYERMWLHV-RHFYRIMYALANGTVLALTTVYIILSWKHGVDPSSDLEKTHHLFMSLQFLILVITYAYYGVRLMLASSSPDKPANNLRKLSPRMILSITIMTWLIFVSRCVFNFLTTFDVIQVQIGSENGKRYISGLAFFLLFIWEVIP 214
[Close]
BLAST of mRNA_M-pyrifera_M_contig90569.21001.1 vs. uniprot
Match: A0A0D2WLP7_CAPO3 (Uncharacterized protein (Fragment) n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WLP7_CAPO3)

HSP 1 Score: 57.0 bits (136), Expect = 3.540e-6
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:   94 RTKLRSFIFAFYFFCFLWALLRATFWLGAGGVFDMSAWG--VEGLFFLFWLPTSVQFCVFSLLAVFYVKILAEQRWKTVWRARAYSTYLLTNALLLLLTLLWAVLAGGGNGQHSEL 435
            R +L SF   F   C +W LLR+ ++  A      + W   VE L  ++W P +++F  FSLL VF+V+I+ +Q W+ + R R  + ++  N  LL L +LW    G  +    +L
Sbjct:   84 RHRLGSFQVGFQSLCLVWTLLRSIWFAKALA----TRWSNLVEEL--IYWPPVNLEFATFSLLGVFFVRIIHQQAWRDIHR-RVMAAWVALNLFLLFLNVLWIAYIGDASTVSEDL 192
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90569.21001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S1CQE6_9STRA2.080e-1531.82Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
F4PLR5_CAVFA2.240e-1125.82DUF1084 domain-containing protein n=1 Tax=Cavender... [more]
A0A3P3YAK4_PLABS3.770e-1127.65DUF1084 domain-containing protein n=1 Tax=Plasmodi... [more]
A0A0G4IV73_PLABS7.910e-726.79DUF1084 domain-containing protein (Fragment) n=1 T... [more]
A0A0D2WLP7_CAPO33.540e-632.76Uncharacterized protein (Fragment) n=1 Tax=Capsasp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90569contigM-pyrifera_M_contig90569:59..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog653948.CCA18640
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BYFE@1,2S2HC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size732
Cds size732
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.811993-CDS-M-pyrifera_M_contig90569:58..7901622816817.811993-CDS-M-pyrifera_M_contig90569:58..790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90569 59..790 +
1692278196.1352704-CDS-M-pyrifera_M_contig90569:58..7901692278196.1352704-CDS-M-pyrifera_M_contig90569:58..790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90569 59..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90569.21001.1prot_M-pyrifera_M_contig90569.21001.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90569 59..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90569.21001.1

>prot_M-pyrifera_M_contig90569.21001.1 ID=prot_M-pyrifera_M_contig90569.21001.1|Name=mRNA_M-pyrifera_M_contig90569.21001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=244bp
MILPYKLALITLYLILLMYVLANVLLLLCVARTKLRSFIFAFYFFCFLWA
LLRATFWLGAGGVFDMSAWGVEGLFFLFWLPTSVQFCVFSLLAVFYVKIL
AEQRWKTVWRARAYSTYLLTNALLLLLTLLWAVLAGGGNGQHSELWQNIF
LGFSAFLFAGLAALVAACAVLLARAPPRTRARAFIFQPRRLLLINILLAL
IFLARAVWNFLSAFNTVTLDVPLAPGADVTPVGFWLYTLWEFVP
back to top

mRNA from alignment at M-pyrifera_M_contig90569:59..790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90569.21001.1 ID=mRNA_M-pyrifera_M_contig90569.21001.1|Name=mRNA_M-pyrifera_M_contig90569.21001.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig90569:59..790+ (Macrocystis pyrifera P11B4 male)
ATGATCCTTCCGTACAAGCTGGCGCTCATCACGCTGTATCTCATCCTGCT
CATGTATGTGCTGGCCAACGTGCTGCTGCTGCTCTGCGTCGCACGCACCA
AGCTCCGCTCCTTCATCTTTGCATTCTACTTCTTTTGTTTCTTGTGGGCG
CTGCTGCGTGCCACCTTCTGGCTGGGCGCCGGCGGAGTCTTCGACATGTC
CGCCTGGGGCGTCGAAGGCCTCTTCTTCCTCTTCTGGCTCCCCACCTCCG
TCCAGTTCTGCGTCTTCTCCCTGCTCGCCGTCTTTTACGTCAAAATCCTG
GCCGAACAGCGCTGGAAGACCGTCTGGCGCGCACGCGCCTACTCCACCTA
CCTGCTCACCAACGCCCTCCTCCTCCTCCTCACCCTGCTCTGGGCCGTCC
TCGCCGGCGGCGGCAACGGGCAGCACAGCGAGCTGTGGCAGAACATTTTC
CTCGGCTTCTCCGCCTTCCTCTTCGCCGGCCTCGCCGCGCTCGTCGCCGC
CTGCGCCGTGCTGCTGGCGCGCGCGCCCCCTCGCACCCGCGCGCGCGCCT
TCATCTTCCAGCCGCGCCGCCTCCTCCTCATCAACATCCTCCTCGCCCTC
ATCTTCCTCGCCCGCGCCGTCTGGAACTTCCTCTCCGCCTTCAACACCGT
CACCCTCGACGTGCCCCTCGCCCCCGGCGCAGACGTCACCCCCGTCGGCT
TCTGGCTGTACACCCTGTGGGAGTTCGTCCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90569:59..790+

>mRNA_M-pyrifera_M_contig90569.21001.1 ID=mRNA_M-pyrifera_M_contig90569.21001.1|Name=mRNA_M-pyrifera_M_contig90569.21001.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1464bp|location=Sequence derived from alignment at M-pyrifera_M_contig90569:59..790+ (Macrocystis pyrifera P11B4 male)
ATGATCCTTCCGTACAAGCTGGCGCTCATCACGCTGTATCTCATCCTGCT
CATGTATGTGCTGGCCAACGTGCTGCTGCTGCTCTGCGTCGCACGCACCA
AGCTCCGCTCCTTCATCTTTGCATTCTACTTCTTTTGTTTCTTGTGGGCG
CTGCTGCGTGCCACCTTCTGGCTGGGCGCCGGCGGAGTCTTCGACATGTC
CGCCTGGGGCGTCGAAGGCCTCTTCTTCCTCTTCTGGCTCCCCACCTCCG
TCCAGTTCTGCGTCTTCTCCCTGCTCGCCGTCTTTTACGTCAAAATCCTG
GCCGAACAGCGCTGGAAGACCGTCTGGCGCGCACGCGCCTACTCCACCTA
CCTGCTCACCAACGCCCTCCTCCTCCTCCTCACCCTGCTCTGGGCCGTCC
TCGCCGGCGGCGGCAACGGGCAGCACAGCGAGCTGTGGCAGAACATTTTC
CTCGGCTTCTCCGCCTTCCTCTTCGCCGGCCTCGCCGCGCTCGTCGCCGC
CTGCGCCGTGCTGCTGGCGCGCGCGCCCCCTCGCACCCGCGCGCGCGCCT
TCATCTTCCAGCCGCGCCGCCTCCTCCTCATCAACATCCTCCTCGCCCTC
ATCTTCCTCGCCCGCGCCGTCTGGAACTTCCTCTCCGCCTTCAACACCGT
CACCCTCGACGTGCCCCTCGCCCCCGGCGCAGACGTCACCCCCGTCGGCT
TCTGGCTGTACACCCTGTGGGAGTTCGTCCCCATGATCCTTCCGTACAAG
CTGGCGCTCATCACGCTGTATCTCATCCTGCTCATGTATGTGCTGGCCAA
CGTGCTGCTGCTGCTCTGCGTCGCACGCACCAAGCTCCGCTCCTTCATCT
TTGCATTCTACTTCTTTTGTTTCTTGTGGGCGCTGCTGCGTGCCACCTTC
TGGCTGGGCGCCGGCGGAGTCTTCGACATGTCCGCCTGGGGCGTCGAAGG
CCTCTTCTTCCTCTTCTGGCTCCCCACCTCCGTCCAGTTCTGCGTCTTCT
CCCTGCTCGCCGTCTTTTACGTCAAAATCCTGGCCGAACAGCGCTGGAAG
ACCGTCTGGCGCGCACGCGCCTACTCCACCTACCTGCTCACCAACGCCCT
CCTCCTCCTCCTCACCCTGCTCTGGGCCGTCCTCGCCGGCGGCGGCAACG
GGCAGCACAGCGAGCTGTGGCAGAACATTTTCCTCGGCTTCTCCGCCTTC
CTCTTCGCCGGCCTCGCCGCGCTCGTCGCCGCCTGCGCCGTGCTGCTGGC
GCGCGCGCCCCCTCGCACCCGCGCGCGCGCCTTCATCTTCCAGCCGCGCC
GCCTCCTCCTCATCAACATCCTCCTCGCCCTCATCTTCCTCGCCCGCGCC
GTCTGGAACTTCCTCTCCGCCTTCAACACCGTCACCCTCGACGTGCCCCT
CGCCCCCGGCGCAGACGTCACCCCCGTCGGCTTCTGGCTGTACACCCTGT
GGGAGTTCGTCCCC
back to top