mRNA_M-pyrifera_M_contig9043.20965.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9043.20965.1
Unique NamemRNA_M-pyrifera_M_contig9043.20965.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9043.20965.1 vs. uniprot
Match: A0A6H5K0I2_9PHAE (OB_NTP_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I2_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 7.840e-53
Identity = 102/145 (70.34%), Postives = 109/145 (75.17%), Query Frame = 1 
Query:   58 MPELLAALSRAVEEEIRGSKGLFGLGTGALERLKSGTRVTPFLRHGSVRRQESEGATPHGLASGGMKKWWRCPRCHISQVVDLEAIHEHFKVCLVDPXXXXXXXXXSNPRGQGALPKRGDRKGQQQQEAP--KKRRMVGTSVKSN 486
            M ELLA LS AVEEEIRGSKGLFGL TG LERLK G RVTPFLRHGSVRRQES G  PHGLA+GGMKKWWRCPRCH+SQVVDL+AIHEHFKVCLVDP         S+  G G +      KG Q+   P  KKRRMVGTSVK +
Sbjct:  568 MTELLATLSGAVEEEIRGSKGLFGLETGVLERLKGGARVTPFLRHGSVRRQESSGKAPHGLAAGGMKKWWRCPRCHVSQVVDLKAIHEHFKVCLVDPAAGG-----SSASG-GTVATDASDKGHQEAAPPGKKKRRMVGTSVKGS 706
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BLAST of mRNA_M-pyrifera_M_contig9043.20965.1 vs. uniprot
Match: D8LEZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ4_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 9.650e-47
Identity = 90/131 (68.70%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:   94 EEEIRGSKGLFGLGTGALERLKSGTRVTPFLRHGSVRRQESEGATPHGLASGGMKKWWRCPRCHISQVVDLEAIHEHFKVCLVDPXXXXXXXXXSNPRGQGALPKRGDRKGQQQQEAP--KKRRMVGTSVK 480
            +EEIRGSKGLFGL TG LERLK G RVTPFLRHGSVRRQ+S G  PHGLA+GGMKKWWRCPRCH+SQVVDL+AIHEHFKVCLVDP         S+    G +      KG Q+   P  KKRRMVGTSVK
Sbjct: 1465 QEEIRGSKGLFGLETGVLERLKGGARVTPFLRHGSVRRQDSSGKAPHGLAAGGMKKWWRCPRCHVSQVVDLKAIHEHFKVCLVDPAPG------SSSASGGTVATDASDKGHQEAAPPGKKKRRMVGTSVK 1589
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9043.20965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I2_9PHAE7.840e-5370.34OB_NTP_bind domain-containing protein n=1 Tax=Ecto... [more]
D8LEZ4_ECTSI9.650e-4768.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9043contigM-pyrifera_M_contig9043:6717..7801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue2.5e-41
Seed eggNOG ortholog2880.D8LEZ4
Preferred nameDHX34
KEGG koko:K20101
Hectar predicted targeting categoryother localisation
GOsGO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0070035,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000622,GO:2000623
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons2
Model size505
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.292149-CDS-M-pyrifera_M_contig9043:6716..69261622816816.292149-CDS-M-pyrifera_M_contig9043:6716..6926Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 6717..6926 -
1692278195.3255987-CDS-M-pyrifera_M_contig9043:6716..69261692278195.3255987-CDS-M-pyrifera_M_contig9043:6716..6926Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 6717..6926 -
1622816816.3054245-CDS-M-pyrifera_M_contig9043:7507..78011622816816.3054245-CDS-M-pyrifera_M_contig9043:7507..7801Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 7508..7801 -
1692278195.3388438-CDS-M-pyrifera_M_contig9043:7507..78011692278195.3388438-CDS-M-pyrifera_M_contig9043:7507..7801Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 7508..7801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9043.20965.1prot_M-pyrifera_M_contig9043.20965.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9043 6717..7801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9043.20965.1

>prot_M-pyrifera_M_contig9043.20965.1 ID=prot_M-pyrifera_M_contig9043.20965.1|Name=mRNA_M-pyrifera_M_contig9043.20965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
GGGGGSGARGDDTSSSSSYMPELLAALSRAVEEEIRGSKGLFGLGTGALE
RLKSGTRVTPFLRHGSVRRQESEGATPHGLASGGMKKWWRCPRCHISQVV
DLEAIHEHFKVCLVDPPPPDGGGGGSNPRGQGALPKRGDRKGQQQQEAPK
KRRMVGTSVKSNRSGGR*
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mRNA from alignment at M-pyrifera_M_contig9043:6717..7801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9043.20965.1 ID=mRNA_M-pyrifera_M_contig9043.20965.1|Name=mRNA_M-pyrifera_M_contig9043.20965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1085bp|location=Sequence derived from alignment at M-pyrifera_M_contig9043:6717..7801- (Macrocystis pyrifera P11B4 male)
GGTGGCGGCGGCGGTAGCGGCGCGCGAGGGGATGACACCAGCAGCAGTAG
TAGCTACATGCCAGAGCTTTTGGCGGCGCTGTCACGAGCGGTCGAGGAAG
AAATTCGAGGCAGCAAGGGGCTGTTCGGTCTGGGGACCGGGGCGCTGGAG
AGACTGAAGAGCGGGACGAGAGTTACCCCCTTCTTGAGGCACGGGAGCGT
TCGAAGGCAGGAGTCGGAGGGCGCGACGCCGCACGGGCTAGCGTCCGGAG
GGATGAAAAAGTGGTGGCGTTGTCCCCGGTGCCATATATCGCAGGTATGT
GTCATATTCTCCGTAAACCGGTTTGTGTGCTTGTGGGAGGGATTTCCTTG
TACCTGTCGTCGATATTACGACTACTTGGGTAGTATGTGCAACCTTGACC
GTTGCTTTCTTCGTTGTTTTTCTTTTTTTTTTTCTTGTTTTCTTGGAAAC
GTTTGGAGCCTGTCTAGCGACCACGGCCTAGATTGTGGCAATGTTTACGG
AGGAATATACAGTATTACGGGGAACCATAGTAAATAGGACCAGATATAGT
TAGTAAAAATAATTAAATATACAGGTTTTTGTGTGTACCGCAGGTCCTAT
TTACTATGGTCCTTCGTAATAGTGATCAGAACCAGAAACATCGGGGGATA
TGTGTGTTTTTTGGGTCCGTCGTTGGTTTTGATCACTATGACCCCCCGTA
ATAGCATGTTTGTGCGAAACAGCAGTACTGAGTATGGCAATTGCTTCGTG
TGAGACACATCAACAACAACCGCAAACGACCACCCACCATCCAGCCACCC
ATCCACACCCACCCACCCACCCACCCACCCACCCACCCAACCAATGATTA
TCGAACTCCTTTGCACTGCACAAAGGTGGTCGATCTCGAGGCCATCCACG
AGCACTTCAAGGTGTGCTTGGTCGACCCACCCCCTCCCGATGGCGGCGGC
GGCGGCAGCAATCCTCGAGGTCAAGGAGCACTGCCGAAACGCGGCGACCG
GAAGGGACAACAACAGCAGGAGGCACCGAAAAAGCGACGCATGGTGGGGA
CGTCCGTGAAGAGCAACCGCTCGGGCGGCCGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9043:6717..7801-

>mRNA_M-pyrifera_M_contig9043.20965.1 ID=mRNA_M-pyrifera_M_contig9043.20965.1|Name=mRNA_M-pyrifera_M_contig9043.20965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig9043:6717..7801- (Macrocystis pyrifera P11B4 male)
GGTGGCGGCGGCGGTAGCGGCGCGCGAGGGGATGACACCAGCAGCAGTAG
TAGCTACATGCCAGAGCTTTTGGCGGCGCTGTCACGAGCGGTCGAGGAAG
AAATTCGAGGCAGCAAGGGGCTGTTCGGTCTGGGGACCGGGGCGCTGGAG
AGACTGAAGAGCGGGACGAGAGTTACCCCCTTCTTGAGGCACGGGAGCGT
TCGAAGGCAGGAGTCGGAGGGCGCGACGCCGCACGGGCTAGCGTCCGGAG
GGATGAAAAAGTGGTGGCGTTGTCCCCGGTGCCATATATCGCAGGGTGGC
GGCGGCGGTAGCGGCGCGCGAGGGGATGACACCAGCAGCAGTAGTAGCTA
CATGCCAGAGCTTTTGGCGGCGCTGTCACGAGCGGTCGAGGAAGAAATTC
GAGGCAGCAAGGGGCTGTTCGGTCTGGGGACCGGGGCGCTGGAGAGACTG
AAGAGCGGGACGAGAGTTACCCCCTTCTTGAGGCACGGGAGCGTTCGAAG
GCAGGAGTCGGAGGGCGCGACGCCGCACGGGCTAGCGTCCGGAGGGATGA
AAAAGTGGTGGCGTTGTCCCCGGTGCCATATATCGCAGGTGGTCGATCTC
GAGGCCATCCACGAGCACTTCAAGGTGTGCTTGGTCGACCCACCCCCTCC
CGATGGCGGCGGCGGCGGCAGCAATCCTCGAGGTCAAGGAGCACTGCCGA
AACGCGGCGACCGGAAGGGACAACAACAGCAGGAGGCACCGAAAAAGCGA
CGCATGGTGGGGACGTCCGTGAAGAGCAACCGCTCGGGCGGCCGCTAGGT
GGTCGATCTCGAGGCCATCCACGAGCACTTCAAGGTGTGCTTGGTCGACC
CACCCCCTCCCGATGGCGGCGGCGGCGGCAGCAATCCTCGAGGTCAAGGA
GCACTGCCGAAACGCGGCGACCGGAAGGGACAACAACAGCAGGAGGCACC
GAAAAAGCGACGCATGGTGGGGACGTCCGTGAAGAGCAACCGCTCGGGCG
GCCGCTAG
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