mRNA_M-pyrifera_M_contig90119.20888.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90119.20888.1
Unique NamemRNA_M-pyrifera_M_contig90119.20888.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: A0A5A8CRU7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRU7_CAFRO)

HSP 1 Score: 95.9 bits (237), Expect = 1.440e-20
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 1 
Query:   25 RVKVFGSVATGFSSRSSDVDACFVGGNPITKLTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVL-RGS-RYFDFLQPIRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            RV ++GSVATG +S +SD+D  FVG      +TA DVR+E     E  G+   R +    P  R +E+ L +GS   F  ++ I +AR+PI++LVH  T  ++DL FN+V+ + NS LL +Y   D  L+RV  L  L+KRWAK
Sbjct:   51 RVALYGSVATGLASATSDLDCVFVGSGARASMTADDVRDEA---RERGGKSRRRGVFAAPPPMRNLERELTKGSPTAFRVVEAIGFARIPILRLVHTPTKTDIDLSFNSVVGVHNSRLLHSYVCFDM-LNRVAPLVTLVKRWAK 190
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: A0A7S0PCJ0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PCJ0_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 6.180e-20
Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = 1 
Query:   25 RVKVFGSVATGFSSRSSDVDACFVGGNPITKLTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVL-RGS-RYFDFLQPIRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            RV ++GSVATG +S +SD+D  FVG      +TA DVR+E     E  G+   R +    P  + +E+ L +GS   F  ++ I +AR+PI++LVH  T  ++DL FN+V+ + NS LL +Y   D  L+RV  L  L+KRWAK
Sbjct:  279 RVALYGSVATGLASATSDLDCVFVGSGARASMTADDVRDEA---RERGGKSRRRGVFAAPPPMKNLERELTKGSPTAFRVVEAIGFARIPILRLVHTPTKTDIDLSFNSVVGVHNSRLLHSYVCFDM-LNRVAPLVTLVKRWAK 418
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: A0A5A8DVY1_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVY1_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 8.960e-20
Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = 1 
Query:   25 RVKVFGSVATGFSSRSSDVDACFVGGNPITKLTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVL-RGS-RYFDFLQPIRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            RV ++GSVATG +S +SD+D  FVG      +TA DVR+E     E  G+   R +    P  + +E+ L +GS   F  ++ I +AR+PI++LVH  T  ++DL FN+V+ + NS LL +Y   D  L+RV  L  L+KRWAK
Sbjct:  275 RVALYGSVATGLASATSDLDCVFVGSGARASMTADDVRDEA---RERGGKSRRRGVFAAPPPMKNLERELTKGSPTAFRVVEAIGFARIPILRLVHTPTKTDIDLSFNSVVGVHNSRLLHSYVCFDM-LNRVAPLVTLVKRWAK 414
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: A0A196SA54_BLAHN (Pre-mRNA processing factor 38 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SA54_BLAHN)

HSP 1 Score: 70.9 bits (172), Expect = 2.040e-11
Identity = 44/149 (29.53%), Postives = 77/149 (51.68%), Query Frame = 1 
Query:    4 KEYDREARVKVFGSVATGFSSRSSDVDACFVGGNPITKLTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVLRGSRYFDFLQPIRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            K ++R   + ++GS   GF +  SD+D C +  + I +    ++ +E+ A  E                   ME++ +   +         AR+P+I+     T+ + DLCFNN+LP+RN+ LL+ Y ++D    RVR LG+++K+WAK
Sbjct:  566 KRFERSV-INIYGSSNNGFGTDGSDIDLCLIDPS-IDREKIMEIADEVAAILEE----------------MHMEEIDKSRLH---------ARIPVIRFEDPVTHIQSDLCFNNILPIRNTLLLKTYSFIDP---RVRILGIIIKKWAK 684
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: A0A812N6T5_9DINO (TUT4 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N6T5_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 2.990e-9
Identity = 47/144 (32.64%), Postives = 67/144 (46.53%), Query Frame = 1 
Query:   19 EARVKVFGSVATGFSSRSSDVDACFVGGNPITKLTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVLRGSRYFDFLQPIRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            +  V+++GS + G  + +SD+D  F G     K  A  + ++  + A+  G                          FD +  I  A +P++KL   + N EVDLC NN L +RNSALL  YC  D    RV  LG L+K WAK
Sbjct:   56 DGAVQMYGSFSNGIKTCTSDLDFTFRGSTD--KQAAVSLLQKFASCAKTFG--------------------------FDNITTIFQAHLPLLKLTDTKDNIEVDLCVNNELGIRNSALLGAYCKYDV---RVLQLGRLVKDWAK 168
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: UPI0007114984 (RNA polymerase GLD2 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007114984)

HSP 1 Score: 64.3 bits (155), Expect = 3.820e-9
Identity = 40/139 (28.78%), Postives = 68/139 (48.92%), Query Frame = 1 
Query:   28 VKVFGSVATGFSSRSSDVDACFVGGNPITKLTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVLRGSRYFDFLQPIRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRW 444
            + ++GS   GF +  SD+D C V     T        +E++  A+                   + K L      +  +   +AR+P+I+     T+ + DLCFNN+LP+RN+ LL+ Y ++D    RVR LG+++K+W
Sbjct:  678 ISIYGSSNNGFGTDGSDIDLCLVDKTIKT--------DEVLGIADE------------------VCKALESLEMLEIDKSRLHARIPVIRFEDPITHIQCDLCFNNILPIRNTFLLKTYSFVDK---RVRVLGIIIKKW 787
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: UPI0003593B81 (poly(A) RNA polymerase GLD2 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003593B81)

HSP 1 Score: 62.8 bits (151), Expect = 1.180e-8
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:   25 RVKVFGSVATGFSSRSSDVDACFVGGNPITKLTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVLRGSRYFDFLQP--IRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            R+ + GS  TGF+++SSDVD CF+                 ++E E         ID +  A   +  + +      F++   +  A+VPI+K   R +  E DL  NN + +RN+ LLR+Y Y+D    RVR L L +KRWA+
Sbjct:  158 RLFIVGSSMTGFATKSSDVDMCFM-----------------ISEKE---------IDQKGDATFILSLIAKALGRCSFVRSPLVIRAKVPILKFEDRNSGVECDLNINNTIGIRNTHLLRHYAYMD---WRVRPLMLFIKRWAR 272
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: A0A7S2QC11_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QC11_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 1.640e-8
Identity = 49/147 (33.33%), Postives = 77/147 (52.38%), Query Frame = 1 
Query:   25 RVKVFGSVATGFSSRSSDVDACFVGGNPITK-----LTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVLRGSRYFDFLQPIRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            R+++FGS A GF +R SD+DA  +  +  T      L++A++ +E +A    E            P F  +++VL  S             +PI+KL ++ +  +VDL   N   L+N+ LLR Y YLD    RVR+LG+L+K WA+
Sbjct:  144 RLELFGSAANGFGTRDSDIDATCIEESSSTDGATGALSSANILKERLAPLIREH-----------PQFFIVDEVLTAS-------------IPILKLRYKDSI-DVDLSCRNADALQNTRLLRGYAYLD---ERVRDLGILVKLWAR 262
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: A0A0P1A4S4_PLAHL (S-M checkpoint control protein CID1 and related nucleotidyltransferases n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4S4_PLAHL)

HSP 1 Score: 60.1 bits (144), Expect = 1.170e-7
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  277 ARVPIIKLVHRRTNREVD--LCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            ARVPII+ +H R  +E D  LCF NVL  RN+ LLR Y   D    R RNLGL++K WAK
Sbjct:  534 ARVPIIRFLHTRRGQEYDCDLCFENVLATRNTPLLRAYAAFD---ERARNLGLVVKHWAK 590
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BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Match: A0A7J7KAP4_BUGNE (CCHC-type domain-containing protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KAP4_BUGNE)

HSP 1 Score: 59.7 bits (143), Expect = 1.470e-7
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 1 
Query:    1 RKEYDREARVKVFGSVATGFSSRSSDVDAC--FVGGNPIT-----KLTAADVREEIVAEAEAEGRRVPRRIDGRTPAFRGMEKVLRGSRYFDFLQPIRYARVPIIKLVHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK 450
            R++Y R+AR++++GS   GF + SSD+D C  F G    T     +  AAD+     +  +       R+I       R + K+L    +   + P+ +A+VPI+K    +   E DL   NVL  RN+ +L  Y  +D    RVR LG   K + K
Sbjct:  118 RRQY-RDARLELYGSSRNGFGTGSSDLDICMTFTGDWEPTCILCCRYCAADIVLHFCSPEDT------RQI------IRNVSKLLYSVDHLRDINPLLFAKVPIVKFSSLKYRLETDLSLYNVLAKRNTKMLYRYSQID---ERVRTLGYAAKEFVK 258
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90119.20888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A5A8CRU7_CAFRO1.440e-2042.36Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S0PCJ0_CAFRO6.180e-2041.67Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8DVY1_CAFRO8.960e-2041.67Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A196SA54_BLAHN2.040e-1129.53Pre-mRNA processing factor 38 n=1 Tax=Blastocystis... [more]
A0A812N6T5_9DINO2.990e-932.64TUT4 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
UPI00071149843.820e-928.78RNA polymerase GLD2 n=1 Tax=Blastocystis sp. subty... [more]
UPI0003593B811.180e-832.64poly(A) RNA polymerase GLD2 n=1 Tax=Aplysia califo... [more]
A0A7S2QC11_9DINO1.640e-833.33Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A0P1A4S4_PLAHL1.170e-755.00S-M checkpoint control protein CID1 and related nu... [more]
A0A7J7KAP4_BUGNE1.470e-731.21CCHC-type domain-containing protein n=1 Tax=Bugula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90119contigM-pyrifera_M_contig90119:6..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score70.1
Seed ortholog evalue1e-09
Seed eggNOG ortholog9258.ENSOANP00000020347
Preferred nameZCCHC11
KEGG koko:K13291
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000289,GO:0000956,GO:0001816,GO:0001817,GO:0001819,GO:0002831,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009892,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010586,GO:0010587,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0014070,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019221,GO:0019222,GO:0019439,GO:0019827,GO:0023051,GO:0023052,GO:0031047,GO:0031050,GO:0031054,GO:0031123,GO:0031323,GO:0031326,GO:0031664,GO:0031974,GO:0031981,GO:0032088,GO:0032101,GO:0032501,GO:0032502,GO:0032675,GO:0032755,GO:0034097,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035194,GO:0035195,GO:0035196,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0043433,GO:0043900,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048583,GO:0050265,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051171,GO:0051239,GO:0051240,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070102,GO:0070569,GO:0070741,GO:0070887,GO:0070918,GO:0071310,GO:0071345,GO:0071354,GO:0071359,GO:0071407,GO:0071704,GO:0080090,GO:0090304,GO:0098727,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901698,GO:1901699,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGs38EW5@33154,3BCDW@33208,3CSW2@33213,3JFDT@40674,483KK@7711,491H1@7742,COG5260@1,KOG2277@2759
EC2.7.7.52
COG Functional cat.L
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.5057197-CDS-M-pyrifera_M_contig90119:5..4551622816812.5057197-CDS-M-pyrifera_M_contig90119:5..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90119 6..455 -
1692278193.1897323-CDS-M-pyrifera_M_contig90119:5..4551692278193.1897323-CDS-M-pyrifera_M_contig90119:5..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90119 6..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90119.20888.1prot_M-pyrifera_M_contig90119.20888.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90119 6..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90119.20888.1

>prot_M-pyrifera_M_contig90119.20888.1 ID=prot_M-pyrifera_M_contig90119.20888.1|Name=mRNA_M-pyrifera_M_contig90119.20888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
RKEYDREARVKVFGSVATGFSSRSSDVDACFVGGNPITKLTAADVREEIV
AEAEAEGRRVPRRIDGRTPAFRGMEKVLRGSRYFDFLQPIRYARVPIIKL
VHRRTNREVDLCFNNVLPLRNSALLRNYCYLDAPLHRVRNLGLLLKRWAK
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mRNA from alignment at M-pyrifera_M_contig90119:6..455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90119.20888.1 ID=mRNA_M-pyrifera_M_contig90119.20888.1|Name=mRNA_M-pyrifera_M_contig90119.20888.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig90119:6..455- (Macrocystis pyrifera P11B4 male)
CGCAAGGAGTATGATCGTGAAGCAAGGGTCAAAGTGTTTGGAAGTGTAGC
CACTGGATTTAGTTCACGTTCTTCAGATGTCGATGCTTGTTTTGTTGGTG
GCAATCCCATCACAAAGCTCACAGCTGCTGATGTAAGGGAGGAAATTGTT
GCAGAAGCAGAAGCAGAGGGAAGACGCGTCCCTCGACGGATCGATGGACG
TACTCCAGCCTTTCGTGGAATGGAGAAAGTATTGCGTGGAAGTCGTTACT
TTGATTTCCTACAACCAATTCGATATGCTCGTGTTCCTATCATCAAACTT
GTCCATCGAAGAACAAACCGGGAAGTTGATCTTTGTTTCAACAATGTCCT
ACCATTGCGAAACTCTGCACTGTTGCGTAACTATTGCTATCTTGATGCAC
CACTTCATCGTGTCCGTAACCTTGGCCTTCTCCTCAAACGATGGGCCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90119:6..455-

>mRNA_M-pyrifera_M_contig90119.20888.1 ID=mRNA_M-pyrifera_M_contig90119.20888.1|Name=mRNA_M-pyrifera_M_contig90119.20888.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig90119:6..455- (Macrocystis pyrifera P11B4 male)
CGCAAGGAGTATGATCGTGAAGCAAGGGTCAAAGTGTTTGGAAGTGTAGC
CACTGGATTTAGTTCACGTTCTTCAGATGTCGATGCTTGTTTTGTTGGTG
GCAATCCCATCACAAAGCTCACAGCTGCTGATGTAAGGGAGGAAATTGTT
GCAGAAGCAGAAGCAGAGGGAAGACGCGTCCCTCGACGGATCGATGGACG
TACTCCAGCCTTTCGTGGAATGGAGAAAGTATTGCGTGGAAGTCGTTACT
TTGATTTCCTACAACCAATTCGATATGCTCGTGTTCCTATCATCAAACTT
GTCCATCGAAGAACAAACCGGGAAGTTGATCTTTGTTTCAACAATGTCCT
ACCATTGCGAAACTCTGCACTGTTGCGTAACTATTGCTATCTTGATGCAC
CACTTCATCGTGTCCGTAACCTTGGCCTTCTCCTCAAACGATGGGCCAAA
CGCAAGGAGTATGATCGTGAAGCAAGGGTCAAAGTGTTTGGAAGTGTAGC
CACTGGATTTAGTTCACGTTCTTCAGATGTCGATGCTTGTTTTGTTGGTG
GCAATCCCATCACAAAGCTCACAGCTGCTGATGTAAGGGAGGAAATTGTT
GCAGAAGCAGAAGCAGAGGGAAGACGCGTCCCTCGACGGATCGATGGACG
TACTCCAGCCTTTCGTGGAATGGAGAAAGTATTGCGTGGAAGTCGTTACT
TTGATTTCCTACAACCAATTCGATATGCTCGTGTTCCTATCATCAAACTT
GTCCATCGAAGAACAAACCGGGAAGTTGATCTTTGTTTCAACAATGTCCT
ACCATTGCGAAACTCTGCACTGTTGCGTAACTATTGCTATCTTGATGCAC
CACTTCATCGTGTCCGTAACCTTGGCCTTCTCCTCAAACGATGGGCCAAA
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