mRNA_M-pyrifera_M_contig90114.20886.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90114.20886.1
Unique NamemRNA_M-pyrifera_M_contig90114.20886.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: A0A2E3MGP0_9GAMM (Cell division topological specificity factor n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MGP0_9GAMM)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-12
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   25 FRKKQESSADIARKRLQIIISADKTD-NHDTKMEQFKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNKELADAEPA 288
            FRK++++SA +A++RLQIIIS ++T  N    +   K+DLLDVI + F V    ++E V VD+ +    S LELNITLP+ E A  EPA
Sbjct:    7 FRKQRKNSASVAKERLQIIISHERTKRNQPDILNSLKQDLLDVITKYFKVDAEQLKEQVKVDMEKAGDHSVLELNITLPDLETA-IEPA 94          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: A0A2E2TJ58_9GAMM (Cell division topological specificity factor n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E2TJ58_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 2.890e-11
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    7 KRFKYLFRKKQESSADIARKRLQIIISADKTDNHDTKM-EQFKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNKELADA 279
            KR   L +  +++SA IA++RLQIIIS ++T      + E  +++L++VIAR+  +    +++ + +D+ + +GQS LELNITLP+ EL  A
Sbjct:    2 KRILKLLQSNKKTSASIAKERLQIIISHERTKKDRAHLLESMQQELIEVIARHLQLAPGSVKDQIKLDLAQNEGQSVLELNITLPDDELVAA 93          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: A0A376BK29_9NEIS (Cell division topological specificity factor n=1 Tax=Alysiella crassa TaxID=153491 RepID=A0A376BK29_9NEIS)

HSP 1 Score: 55.1 bits (131), Expect = 1.030e-7
Identity = 34/93 (36.56%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   13 FKYLFRKKQESSADIARKRLQIIISADK-TDNHDTKMEQF----KRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNKELAD 276
            F++LF K+ + +A++AR RLQIII+ ++ T N D     +    +++LL+V+++   +++ DI    N+   +RDG   LELNITLP  +  D
Sbjct:    4 FEFLFGKRNQKTANVARDRLQIIIAQERNTHNTDNNTPDYLPTLQKELLEVLSKYVKIELNDI----NISHEKRDGIDMLELNITLPESKRTD 92          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: A0A533ZYM8_9GAMM (Cell division topological specificity factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A533ZYM8_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 8.690e-7
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   19 YLFRKKQESSADIARKRLQIIISAD---KTDNHDTKMEQ-FKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNKELA 273
            Y+FR K E+SA  A+KRLQ I+S +   K+D    K++Q     +++VI  N  + I   Q  V V++ +    S LELNITLPN+ELA
Sbjct:    6 YIFRNKPENSASQAKKRLQFILSHNCGVKSDIDFQKLQQKISEAIIEVIRENTHLDID--QNNVQVELAKTGDFSILELNITLPNEELA 92          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: A0A7C2N881_9GAMM (Cell division topological specificity factor n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C2N881_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.120e-6
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   25 FRKKQESSADIARKRLQIIISADKTDN---HDTKMEQFKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNKELAD 276
            FR K+E+SA +A++RLQIII+ ++      HD  + + +++LLDVI R  +V      EAV V +   DG   LELNI LP+ +  +
Sbjct:    7 FRGKRETSAKLAKERLQIIIAHERAQTRAGHDF-LPKLEKELLDVIRRYVEVS----DEAVKVKLDREDGVEVLELNIILPDSDTKE 88          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: A0A3Q9JJ27_9GAMM (Cell division topological specificity factor n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3Q9JJ27_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 3.240e-6
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   31 KKQESSADIARKRLQIIISADKTDNHDTK-MEQFKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPN 261
            KKQ SSA IA++RLQII++ ++        + Q ++DLLDVI +   +     QE + V++  +   S LELNITLP+
Sbjct:   10 KKQNSSASIAKERLQIIVAHERGQRSQPDYLPQLQKDLLDVIRKYIPID----QEQIQVELANQGNCSVLELNITLPD 83          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: UPI00048440FB (cell division topological specificity factor MinE n=1 Tax=Balneatrix alpica TaxID=75684 RepID=UPI00048440FB)

HSP 1 Score: 50.4 bits (119), Expect = 4.090e-6
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   25 FRKKQESSADIARKRLQIIISADKTDNHDTK-MEQFKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNK 264
            FR ++ SSA +A++RLQII++ +++  H    +   +R+LL+VI +   V     Q+ V++ +   D  S LELNITLP++
Sbjct:    8 FRSRKNSSAAVAKERLQIIVAHERSKRHQPDYLPDLQRELLEVIKKYVQVA----QDDVSIQIENTDNCSVLELNITLPDR 84          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: A0A3B9RWC8_9GAMM (Cell division topological specificity factor n=2 Tax=Legionellales TaxID=118969 RepID=A0A3B9RWC8_9GAMM)

HSP 1 Score: 50.1 bits (118), Expect = 6.460e-6
Identity = 32/90 (35.56%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   13 FKYLFRKKQESSADIARKRLQIIISADKTD-NHDTKMEQFKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNKELADA 279
            FKYL  KK+  SA +A++RLQIIIS +++  N+   + + + ++L+VIAR   +K    ++ V+V++      + LELN+T+P + L ++
Sbjct:    4 FKYL--KKRPQSASVAKERLQIIISHERSQRNNRDYLPRLQEEILEVIARYVPIK----RDQVSVNLERTGDSAVLELNVTMPEEALEES 87          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: UPI0019CE9215 (Cell division topological specificity factor MinE n=1 Tax=Gloeobacterales cyanobacterium ES-bin-313 TaxID=2812629 RepID=UPI0019CE9215)

HSP 1 Score: 49.7 bits (117), Expect = 9.540e-6
Identity = 26/86 (30.23%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   22 LFRKKQESSADIARKRLQIIISADKTDNHDTKMEQFKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNKELADA 279
            LF++ +E+S  +A+ RL++++S D+TD     ME+ ++++L VI + F++  T   E++ V +    G + +  NI +   ++ADA
Sbjct:    9 LFKRTKETSGSVAKDRLKMVLSVDRTDMAPQTMEEMRKEILAVITKYFEIDDT---ESLEVGLEREQGSTAIIANIPIRRVKVADA 91          
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Match: A0A7L6ASS8_9GAMM (Cell division topological specificity factor n=1 Tax=Candidatus Thiothrix singaporensis TaxID=2799669 RepID=A0A7L6ASS8_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 1.180e-5
Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   25 FRKKQESSADIARKRLQIIISADKTDNHDTK-MEQFKRDLLDVIARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNK 264
            FR  +++SA +A++RLQI+I+ ++ D +  + + Q +RD++DVI +   +K    +E VNV   +      LELNI LP +
Sbjct:    7 FRTDKQTSAQVAKERLQIVIAHERLDRNSXEYLPQLRRDIMDVIRKYVPIK----EEQVNVQFEKGADYDVLELNIALPER 83          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90114.20886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A2E3MGP0_9GAMM1.390e-1247.19Cell division topological specificity factor n=1 T... [more]
A0A2E2TJ58_9GAMM2.890e-1139.13Cell division topological specificity factor n=1 T... [more]
A0A376BK29_9NEIS1.030e-736.56Cell division topological specificity factor n=1 T... [more]
A0A533ZYM8_9GAMM8.690e-742.70Cell division topological specificity factor n=1 T... [more]
A0A7C2N881_9GAMM1.120e-640.23Cell division topological specificity factor n=1 T... [more]
A0A3Q9JJ27_9GAMM3.240e-641.03Cell division topological specificity factor n=2 T... [more]
UPI00048440FB4.090e-637.04cell division topological specificity factor MinE ... [more]
A0A3B9RWC8_9GAMM6.460e-635.56Cell division topological specificity factor n=2 T... [more]
UPI0019CE92159.540e-630.23Cell division topological specificity factor MinE ... [more]
A0A7L6ASS8_9GAMM1.180e-535.80Cell division topological specificity factor n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90114contigM-pyrifera_M_contig90114:163..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.4256668-CDS-M-pyrifera_M_contig90114:162..4531622816812.4256668-CDS-M-pyrifera_M_contig90114:162..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90114 163..453 -
1692278193.1501505-CDS-M-pyrifera_M_contig90114:162..4531692278193.1501505-CDS-M-pyrifera_M_contig90114:162..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90114 163..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90114.20886.1prot_M-pyrifera_M_contig90114.20886.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90114 163..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90114.20886.1

>prot_M-pyrifera_M_contig90114.20886.1 ID=prot_M-pyrifera_M_contig90114.20886.1|Name=mRNA_M-pyrifera_M_contig90114.20886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MRKRFKYLFRKKQESSADIARKRLQIIISADKTDNHDTKMEQFKRDLLDV
IARNFDVKITDIQEAVNVDVGERDGQSTLELNITLPNKELADAEPA*
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mRNA from alignment at M-pyrifera_M_contig90114:163..453-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90114.20886.1 ID=mRNA_M-pyrifera_M_contig90114.20886.1|Name=mRNA_M-pyrifera_M_contig90114.20886.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig90114:163..453- (Macrocystis pyrifera P11B4 male)
ATGAGAAAACGCTTTAAATACTTATTCCGCAAAAAGCAGGAGTCTTCTGC TGATATCGCGAGAAAACGCTTGCAAATCATTATTTCAGCTGACAAAACTG ACAATCATGATACCAAGATGGAACAATTCAAGCGCGACCTGCTTGATGTG ATTGCTCGCAACTTTGATGTGAAAATCACTGACATCCAAGAAGCGGTGAA CGTTGATGTAGGCGAAAGAGACGGCCAATCCACATTGGAACTTAACATCA CATTGCCTAACAAAGAATTAGCAGACGCAGAGCCTGCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90114:163..453-

>mRNA_M-pyrifera_M_contig90114.20886.1 ID=mRNA_M-pyrifera_M_contig90114.20886.1|Name=mRNA_M-pyrifera_M_contig90114.20886.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig90114:163..453- (Macrocystis pyrifera P11B4 male)
ATGAGAAAACGCTTTAAATACTTATTCCGCAAAAAGCAGGAGTCTTCTGC
TGATATCGCGAGAAAACGCTTGCAAATCATTATTTCAGCTGACAAAACTG
ACAATCATGATACCAAGATGGAACAATTCAAGCGCGACCTGCTTGATGTG
ATTGCTCGCAACTTTGATGTGAAAATCACTGACATCCAAGAAGCGGTGAA
CGTTGATGTAGGCGAAAGAGACGGCCAATCCACATTGGAACTTAACATCA
CATTGCCTAACAAAGAATTAGCAGACGCAGAGCCTGCTTAAATGAGAAAA
CGCTTTAAATACTTATTCCGCAAAAAGCAGGAGTCTTCTGCTGATATCGC
GAGAAAACGCTTGCAAATCATTATTTCAGCTGACAAAACTGACAATCATG
ATACCAAGATGGAACAATTCAAGCGCGACCTGCTTGATGTGATTGCTCGC
AACTTTGATGTGAAAATCACTGACATCCAAGAAGCGGTGAACGTTGATGT
AGGCGAAAGAGACGGCCAATCCACATTGGAACTTAACATCACATTGCCTA
ACAAAGAATTAGCAGACGCAGAGCCTGCTTAA
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