mRNA_M-pyrifera_M_contig90062.20876.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90062.20876.1
Unique NamemRNA_M-pyrifera_M_contig90062.20876.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: A0A2X0KI11_9BASI (BZ3500_MvSof-1268-A1-R1_C047g00159 protein n=2 Tax=Microbotryum TaxID=34416 RepID=A0A2X0KI11_9BASI)

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 ASITTSAICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIF 138
            A I  SA CVQRFDDSL+SAIHITYHISLRSSS++EPR PLL V F
Sbjct:    3 AGIPASARCVQRFDDSLNSAIHITYHISLRSSSMREPRDPLLKVFF 48
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: M2YRY1_PSEFD (Uncharacterized protein n=4 Tax=leotiomyceta TaxID=716546 RepID=M2YRY1_PSEFD)

HSP 1 Score: 68.6 bits (166), Expect = 2.730e-14
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   19 AICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIFDL 144
            A+CVQRFDDSL+SAIHITY ISLRSSS+ EPR PLL V+FDL
Sbjct:    9 AMCVQRFDDSLNSAIHITYRISLRSSSMPEPRDPLLKVLFDL 50
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: A0A6A6EYI2_9PEZI (Uncharacterized protein n=1 Tax=Cercospora zeae-maydis SCOH1-5 TaxID=717836 RepID=A0A6A6EYI2_9PEZI)

HSP 1 Score: 68.6 bits (166), Expect = 7.510e-14
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   19 AICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIFDLI 147
            AICVQRFDDSL+SAIHITY ISLRSSS+ EPR PLL V+F+L+
Sbjct:    9 AICVQRFDDSLNSAIHITYRISLRSSSMPEPRDPLLKVLFNLL 51
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: A0A067LQX6_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067LQX6_9AGAM)

HSP 1 Score: 66.2 bits (160), Expect = 2.420e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   16 SAICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIFDL 144
            SA CVQRFDDSL+SAIHITY ISLRSSS++EPR PLL V+F L
Sbjct:    8 SARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVVFRL 50
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: E9I2Y8_DAPPU (Uncharacterized protein n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9I2Y8_DAPPU)

HSP 1 Score: 65.9 bits (159), Expect = 2.470e-13
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   16 SAICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIF 138
            SAICVQRFD S +SAIH TY ISLRSSSL+EPRYPLL V+F
Sbjct:    8 SAICVQRFDGSRNSAIHTTYRISLRSSSLREPRYPLLRVVF 48
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: A0A150UNC4_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150UNC4_9PEZI)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   19 AICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIFD 141
            A+CVQRFDDSL+SAIHITY ISLRSSS+ EPR PLL V+FD
Sbjct:    6 AMCVQRFDDSLNSAIHITYRISLRSSSMPEPRDPLLKVLFD 46
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: M3C7P0_SPHMS (Uncharacterized protein n=1 Tax=Sphaerulina musiva (strain SO2202) TaxID=692275 RepID=M3C7P0_SPHMS)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-13
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   19 AICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIFDLI 147
            A+CVQRFDDSL+SAIHITY ISLRSSS+ EPR PLL V+F+L+
Sbjct:    9 AMCVQRFDDSLNSAIHITYRISLRSSSMPEPRDPLLKVLFNLL 51
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: A0A1Y2BR63_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2BR63_9BASI)

HSP 1 Score: 65.5 bits (158), Expect = 4.120e-13
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   16 SAICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIF 138
            SA CVQRFDDSL+SAIHITYHISLRSSS+ +PR PLL V F
Sbjct:    8 SARCVQRFDDSLNSAIHITYHISLRSSSMSKPRDPLLKVFF 48
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: G4UHX0_NEUT9 (Uncharacterized protein n=1 Tax=Neurospora tetrasperma (strain FGSC 2509 / P0656) TaxID=510952 RepID=G4UHX0_NEUT9)

HSP 1 Score: 65.1 bits (157), Expect = 5.220e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   19 AICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVI 135
            AICVQRFDDS +SAIH TY ISLRSSSL+EPRYPLL V+
Sbjct:    9 AICVQRFDDSRNSAIHTTYRISLRSSSLREPRYPLLRVV 47
[Close]
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Match: A0A0P9EDQ3_RHOGW (Uncharacterized protein n=2 Tax=Basidiomycota TaxID=5204 RepID=A0A0P9EDQ3_RHOGW)

HSP 1 Score: 65.1 bits (157), Expect = 6.770e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   16 SAICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIF 138
            SA CVQRFDDSL+SAIHITY ISLRSSS++EPR PLL V+F
Sbjct:    8 SARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVLF 48
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90062.20876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2X0KI11_9BASI2.600e-1478.26BZ3500_MvSof-1268-A1-R1_C047g00159 protein n=2 Tax... [more]
M2YRY1_PSEFD2.730e-1480.95Uncharacterized protein n=4 Tax=leotiomyceta TaxID... [more]
A0A6A6EYI2_9PEZI7.510e-1479.07Uncharacterized protein n=1 Tax=Cercospora zeae-ma... [more]
A0A067LQX6_9AGAM2.420e-1379.07Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
E9I2Y8_DAPPU2.470e-1380.49Uncharacterized protein n=1 Tax=Daphnia pulex TaxI... [more]
A0A150UNC4_9PEZI2.740e-1380.49Uncharacterized protein (Fragment) n=1 Tax=Acidomy... [more]
M3C7P0_SPHMS2.740e-1376.74Uncharacterized protein n=1 Tax=Sphaerulina musiva... [more]
A0A1Y2BR63_9BASI4.120e-1380.49Uncharacterized protein n=1 Tax=Leucosporidium cre... [more]
G4UHX0_NEUT95.220e-1382.05Uncharacterized protein n=1 Tax=Neurospora tetrasp... [more]
A0A0P9EDQ3_RHOGW6.770e-1380.49Uncharacterized protein n=2 Tax=Basidiomycota TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90062contigM-pyrifera_M_contig90062:4..150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.6
Seed ortholog evalue9.5e-10
Seed eggNOG ortholog83344.XP_007928824.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs205J4@147541,2E6PU@1,2SDCQ@2759,3A8A2@33154,3MMSB@451867,3P7CI@4751,3QYXS@4890
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.0853271-CDS-M-pyrifera_M_contig90062:3..1501622816812.0853271-CDS-M-pyrifera_M_contig90062:3..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90062 4..150 -
1692278192.966477-CDS-M-pyrifera_M_contig90062:3..1501692278192.966477-CDS-M-pyrifera_M_contig90062:3..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90062 4..150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90062.20876.1prot_M-pyrifera_M_contig90062.20876.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90062 4..150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90062.20876.1

>prot_M-pyrifera_M_contig90062.20876.1 ID=prot_M-pyrifera_M_contig90062.20876.1|Name=mRNA_M-pyrifera_M_contig90062.20876.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
ASITTSAICVQRFDDSLSSAIHITYHISLRSSSLQEPRYPLLTVIFDLI
back to top

mRNA from alignment at M-pyrifera_M_contig90062:4..150-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90062.20876.1 ID=mRNA_M-pyrifera_M_contig90062.20876.1|Name=mRNA_M-pyrifera_M_contig90062.20876.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig90062:4..150- (Macrocystis pyrifera P11B4 male)
GCTAGTATTACTACTAGCGCAATTTGCGTTCAAAGATTTGATGATTCACT
GAGTTCTGCAATTCACATTACGTATCACATTTCGCTGCGTTCTTCATCGT
TACAGGAGCCTAGGTATCCGTTGTTAACAGTTATTTTTGATTTAATT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90062:4..150-

>mRNA_M-pyrifera_M_contig90062.20876.1 ID=mRNA_M-pyrifera_M_contig90062.20876.1|Name=mRNA_M-pyrifera_M_contig90062.20876.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig90062:4..150- (Macrocystis pyrifera P11B4 male)
GCTAGTATTACTACTAGCGCAATTTGCGTTCAAAGATTTGATGATTCACT
GAGTTCTGCAATTCACATTACGTATCACATTTCGCTGCGTTCTTCATCGT
TACAGGAGCCTAGGTATCCGTTGTTAACAGTTATTTTTGATTTAATTGCT
AGTATTACTACTAGCGCAATTTGCGTTCAAAGATTTGATGATTCACTGAG
TTCTGCAATTCACATTACGTATCACATTTCGCTGCGTTCTTCATCGTTAC
AGGAGCCTAGGTATCCGTTGTTAACAGTTATTTTTGATTTAATT
back to top