mRNA_M-pyrifera_M_contig89537.20758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89537.20758.1
Unique NamemRNA_M-pyrifera_M_contig89537.20758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: UPI001298C0DC (40S ribosomal protein S3a/S1 n=3 Tax=Bacillus thuringiensis TaxID=1428 RepID=UPI001298C0DC)

HSP 1 Score: 138 bits (347), Expect = 7.850e-39
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGKKV 330
            GY+LRLFC+GFT KRQNQ+KKT YAQ+ QVR IR+KM+DIM RE    DL+ LV KL  ++IG+ I K CQGIYPL +V++RKVK+LK PK+D  KL+ELHGE  SSG K 
Sbjct:   76 GYLLRLFCIGFTNKRQNQIKKTFYAQSEQVRNIRRKMVDIMAREVSSNDLKELVNKLIPDSIGKDIEKACQGIYPLRDVHIRKVKILKKPKFDLGKLMELHGEGSSSGGKT 186
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BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: A0A2K5CMM9_AOTNA (Ribosomal protein S3A n=1 Tax=Aotus nancymaae TaxID=37293 RepID=A0A2K5CMM9_AOTNA)

HSP 1 Score: 135 bits (339), Expect = 2.190e-38
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGK 324
            GY+LRLFC+GFTKKR NQ++KT YAQ  QVRQIRKKM++IM RE +  DL+ +V KL  ++IG+ I K CQ IYPL++V VRKVKMLK PK++  KL+ELHGE  SSGK
Sbjct:   13 GYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK 121
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BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: A0A7N5JYC9_AILME (40S ribosomal protein S3a n=2 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5JYC9_AILME)

HSP 1 Score: 134 bits (338), Expect = 2.600e-38
Identity = 69/109 (63.30%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGK 324
            GY+LRLFC+GFTKKR NQ++KT YAQ  QVRQIRKKM++IM RE +  DL+ +V KL  ++IG+ I K CQ IYPL++V VRKVKMLK PK++  KL+ELHGE G +GK
Sbjct:   13 GYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEIVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGK 121
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BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: A0A8J6F7A8_ELECQ (40S ribosomal protein S3a n=3 Tax=Neobatrachia TaxID=8416 RepID=A0A8J6F7A8_ELECQ)

HSP 1 Score: 137 bits (346), Expect = 4.410e-38
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGK 324
            GY+LRLFC+GFTKKR NQ++KT YAQ  QVRQIRKKM++IM RE +  DL+ +V KL  ++IG+ I K CQ IYPL++V VRKVKMLK PK++  KL+ELHGE GSSGK
Sbjct:  132 GYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSSGK 240
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BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: K7P590_9PIPI (Ribosomal protein S3A (Fragment) n=4 Tax=Tetrapoda TaxID=32523 RepID=K7P590_9PIPI)

HSP 1 Score: 135 bits (339), Expect = 5.450e-38
Identity = 69/109 (63.30%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGK 324
            GY+LRLFC+GFTKKR NQ++KT YAQ  QVRQIRKKM++IM RE +  DL+ +V KL  ++IG+ I K CQ IYPL++V VRKVKMLK PK++  KL+ELHGE G +GK
Sbjct:   51 GYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGK 159
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BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: RS3A_RAT (40S ribosomal protein S3a n=56 Tax=cellular organisms TaxID=131567 RepID=RS3A_RAT)

HSP 1 Score: 137 bits (345), Expect = 6.230e-38
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGK 324
            GY+LRLFC+GFTKKR NQ++KT YAQ  QVRQIRKKM++IM RE +  DL+ +V KL  ++IG+ I K CQ IYPL++V VRKVKMLK PK++  KL+ELHGE GSSGK
Sbjct:  132 GYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGK 240
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BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: A0A8C5LLJ4_9ANUR (40S ribosomal protein S3a n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5LLJ4_9ANUR)

HSP 1 Score: 136 bits (343), Expect = 7.270e-38
Identity = 70/109 (64.22%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGK 324
            GY+LRLFC+GFTKKR NQ++KT YAQ  QVRQIRKKM++IM RE +  DL+ +V KL  ++IG+ I K CQ IYPL++V VRKVKMLK PK++  KL+ELHGE GS+GK
Sbjct:  111 GYLLRLFCVGFTKKRSNQIRKTSYAQHQQVRQIRKKMMEIMTREVQINDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSAGK 219
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BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: A0A2K6S2S3_SAIBB (Uncharacterized protein n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K6S2S3_SAIBB)

HSP 1 Score: 133 bits (335), Expect = 8.130e-38
Identity = 69/109 (63.30%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGK 324
            GY+LRLFC+GFTKKR NQ++KT YAQ  QVRQIRKKM++IM +E +  DL+ +V KL  ++IG+ I K CQ IYPL++V VRKVKMLK PK++  KL+ELHGE  SSGK
Sbjct:   16 GYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTQEVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: UPI0005F41D82 (40S ribosomal protein S3a-like n=1 Tax=Mandrillus leucophaeus TaxID=9568 RepID=UPI0005F41D82)

HSP 1 Score: 135 bits (339), Expect = 9.100e-38
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAEC-DLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGSSGK 324
            GY+LRLFC+GFTKKR NQ++KT YAQ  QVRQIRKKM++IM RE +  DL+ +V KL  ++IG+ I K CQ IYPL++V VRKVKMLK PK++  KL+ELHGE  SSGK
Sbjct:   68 GYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Match: A0A7S0HQA3_9EUKA (40S ribosomal protein S3a n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HQA3_9EUKA)

HSP 1 Score: 136 bits (343), Expect = 1.100e-37
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    1 GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAE-CDLRGLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELHGEAGS--SGKKVK 333
            GYVLRLFC+GFTKKR NQ+KKTCYA  +QV+ IRKKM DIM REA+ C L+ LV+KL   +IG+ + K C GIYPL NV VRKVKMLK PK+D +KLLE+H ++G   +G KV+
Sbjct:  132 GYVLRLFCIGFTKKRMNQLKKTCYANNAQVKAIRKKMTDIMTREAQSCPLKQLVDKLIPESIGKEVEKACSGIYPLQNVFVRKVKMLKKPKFDLTKLLEVHADSGKEDTGAKVE 245
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89537.20758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001298C0DC7.850e-3963.9640S ribosomal protein S3a/S1 n=3 Tax=Bacillus thur... [more]
A0A2K5CMM9_AOTNA2.190e-3864.22Ribosomal protein S3A n=1 Tax=Aotus nancymaae TaxI... [more]
A0A7N5JYC9_AILME2.600e-3863.3040S ribosomal protein S3a n=2 Tax=Ailuropoda melan... [more]
A0A8J6F7A8_ELECQ4.410e-3865.1440S ribosomal protein S3a n=3 Tax=Neobatrachia Tax... [more]
K7P590_9PIPI5.450e-3863.30Ribosomal protein S3A (Fragment) n=4 Tax=Tetrapoda... [more]
RS3A_RAT6.230e-3865.1440S ribosomal protein S3a n=56 Tax=cellular organi... [more]
A0A8C5LLJ4_9ANUR7.270e-3864.2240S ribosomal protein S3a n=1 Tax=Leptobrachium le... [more]
A0A2K6S2S3_SAIBB8.130e-3863.30Uncharacterized protein n=2 Tax=Boreoeutheria TaxI... [more]
UPI0005F41D829.100e-3864.2240S ribosomal protein S3a-like n=1 Tax=Mandrillus ... [more]
A0A7S0HQA3_9EUKA1.100e-3763.1640S ribosomal protein S3a n=1 Tax=Phaeocystis anta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89537contigM-pyrifera_M_contig89537:466..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score139.8
Seed ortholog evalue7.8e-31
Seed eggNOG ortholog10116.ENSRNOP00000065066
Preferred nameRPS3A
KEGG koko:K02984
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009636,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0015935,GO:0019222,GO:0019538,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0042127,GO:0042221,GO:0042493,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045471,GO:0045727,GO:0046677,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0060548,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0097305,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904,GO:2000112
EggNOG free text desc.translation initiation factor binding
EggNOG OGs35NEW@314146,38EQE@33154,3BDUP@33208,3CS91@33213,3J2XT@40674,48AD5@7711,491B6@7742,4PVJK@9989,COG1890@1,KOG1628@2759
COG Functional cat.J
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.0184283-CDS-M-pyrifera_M_contig89537:465..8041622816806.0184283-CDS-M-pyrifera_M_contig89537:465..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89537 466..804 -
1692278189.3451722-CDS-M-pyrifera_M_contig89537:465..8041692278189.3451722-CDS-M-pyrifera_M_contig89537:465..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89537 466..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89537.20758.1prot_M-pyrifera_M_contig89537.20758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89537 466..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89537.20758.1

>prot_M-pyrifera_M_contig89537.20758.1 ID=prot_M-pyrifera_M_contig89537.20758.1|Name=mRNA_M-pyrifera_M_contig89537.20758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
GYVLRLFCLGFTKKRQNQVKKTCYAQASQVRQIRKKMLDIMKREAECDLR
GLVEKLKTNTIGETIAKDCQGIYPLNNVNVRKVKMLKTPKYDPSKLLELH
GEAGSSGKKVKN*
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mRNA from alignment at M-pyrifera_M_contig89537:466..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89537.20758.1 ID=mRNA_M-pyrifera_M_contig89537.20758.1|Name=mRNA_M-pyrifera_M_contig89537.20758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig89537:466..804- (Macrocystis pyrifera P11B4 male)
GGATATGTGCTGCGCCTCTTCTGCCTTGGCTTCACCAAGAAGCGCCAGAA
CCAGGTCAAGAAGACGTGCTACGCCCAGGCTTCGCAGGTCCGCCAGATCC
GCAAGAAGATGCTCGACATCATGAAGCGTGAGGCCGAGTGCGACCTTCGC
GGCCTCGTCGAGAAGCTGAAGACCAACACCATCGGCGAGACCATTGCCAA
GGACTGCCAGGGCATCTACCCCCTCAACAACGTGAACGTTCGCAAGGTGA
AGATGCTCAAGACCCCCAAGTACGACCCCTCCAAGCTCCTCGAGCTCCAC
GGTGAGGCGGGTTCCTCGGGCAAGAAGGTGAAGAACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89537:466..804-

>mRNA_M-pyrifera_M_contig89537.20758.1 ID=mRNA_M-pyrifera_M_contig89537.20758.1|Name=mRNA_M-pyrifera_M_contig89537.20758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig89537:466..804- (Macrocystis pyrifera P11B4 male)
GGATATGTGCTGCGCCTCTTCTGCCTTGGCTTCACCAAGAAGCGCCAGAA
CCAGGTCAAGAAGACGTGCTACGCCCAGGCTTCGCAGGTCCGCCAGATCC
GCAAGAAGATGCTCGACATCATGAAGCGTGAGGCCGAGTGCGACCTTCGC
GGCCTCGTCGAGAAGCTGAAGACCAACACCATCGGCGAGACCATTGCCAA
GGACTGCCAGGGCATCTACCCCCTCAACAACGTGAACGTTCGCAAGGTGA
AGATGCTCAAGACCCCCAAGTACGACCCCTCCAAGCTCCTCGAGCTCCAC
GGTGAGGCGGGTTCCTCGGGCAAGAAGGTGAAGAACTAAGGATATGTGCT
GCGCCTCTTCTGCCTTGGCTTCACCAAGAAGCGCCAGAACCAGGTCAAGA
AGACGTGCTACGCCCAGGCTTCGCAGGTCCGCCAGATCCGCAAGAAGATG
CTCGACATCATGAAGCGTGAGGCCGAGTGCGACCTTCGCGGCCTCGTCGA
GAAGCTGAAGACCAACACCATCGGCGAGACCATTGCCAAGGACTGCCAGG
GCATCTACCCCCTCAACAACGTGAACGTTCGCAAGGTGAAGATGCTCAAG
ACCCCCAAGTACGACCCCTCCAAGCTCCTCGAGCTCCACGGTGAGGCGGG
TTCCTCGGGCAAGAAGGTGAAGAACTAA
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