mRNA_M-pyrifera_M_contig89260.20687.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89260.20687.1
Unique NamemRNA_M-pyrifera_M_contig89260.20687.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A2E3MG89_9GAMM (Transporter n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MG89_9GAMM)

HSP 1 Score: 317 bits (812), Expect = 1.980e-103
Identity = 163/261 (62.45%), Postives = 205/261 (78.54%), Query Frame = 1
Query:    4 LLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAM 786
            LL VL+ Y + +GHF ++V +LF PD S+L    ++AAMGQAFFSLS+ATGSI+MYGAY+PR+ S+T AA+ I+L DT +AL AGLAIFPVVFANG+ P+SGPGLIF+TLPIAFG M FG +FA LFF+MLVFAAFTS ISLLEPSVAW++ETF+  R KAA +    IW VGL TV SFN  ++IKLF LTMFE++D+ TANIMLP+GG   AIFA W LNR   R+ELQ+ D  L+ +WRF +RYI+P  +L+VF+  +
Sbjct:  193 LLGVLVVYAMESGHFAQSVSYLFHPDFSKLKTHGIVAAMGQAFFSLSLATGSIMMYGAYLPRSASVTKAAVVIALSDTFVALLAGLAIFPVVFANGLEPSSGPGLIFETLPIAFGHMPFGNVFATLFFVMLVFAAFTSAISLLEPSVAWLIETFKIPRRKAAIISSFGIWFVGLVTVVSFNWAANIKLFKLTMFEVLDFLTANIMLPLGGFFIAIFAVWFLNRDVARRELQLPDGKLFSTWRFVVRYISPVAILVVFISVI 453          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A7C1BNP2_9GAMM (Sodium-dependent transporter (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1BNP2_9GAMM)

HSP 1 Score: 292 bits (747), Expect = 6.350e-96
Identity = 151/272 (55.51%), Postives = 203/272 (74.63%), Query Frame = 1
Query:    1 LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLF-------DLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            +LL VL+GY +++G F + V FLF+PD S++T + +L AMG AFF+LS+  G+I++YG+Y+P N SI   +IA+SL+DT +AL AGLAIFP+VFANG+ P +GPGLIFQTLPIAFG M +G  F +LFF++LVFAA++S+ISL+EP+VAW++E    TR  A+ + G + WL GL TV SFN+ SD+KL        D T+F+L+DY TANIMLP+GGLL AIFA W ++R     EL + DRF Y  WRF +RYITP  V+IVFL A+ +I
Sbjct:   14 VLLFVLVGYALNSGGFEQGVVFLFQPDFSKITANGILIAMGHAFFTLSLGMGAIMVYGSYLPSNASIAKTSIAVSLMDTLVALLAGLAIFPIVFANGLEPGAGPGLIFQTLPIAFGHMQYGAFFGMLFFVLLVFAAWSSSISLIEPAVAWLVENKGMTRIFASVVAGLVTWLFGLLTVLSFNLWSDVKLLSSIEIFKDSTVFDLLDYLTANIMLPLGGLLIAIFAAWKMSRESTVDELGMGDRFFYPLWRFLVRYITPIAVIIVFLKAVSVI 285          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A524IGS8_9BACT (Sodium-dependent transporter (Fragment) n=1 Tax=Nitrospirales bacterium TaxID=2358460 RepID=A0A524IGS8_9BACT)

HSP 1 Score: 290 bits (742), Expect = 1.630e-95
Identity = 141/261 (54.02%), Postives = 202/261 (77.39%), Query Frame = 1
Query:   13 VLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            +++GY ++TG F + + FLF PD S+LTGS++LAAMGQAFFSLS+  G+I++YG+YVP++ SI +  IAI+L DTA+AL AG+AIFP+VFAN + P SGPGLIFQTLP+AFG M+ G IF  LFF++L+ AA+TS+ISL+EP V W++ETF  +R KA+   G   WL+GL TV+SFN+ +D+K F LT F+L+D+ T+N+MLP+GG+L A+FAGW+++    + EL + +  LY +W+  +RYI P  V IV L+A+G++
Sbjct:    1 LMVGYSMTTGFFGKGLEFLFTPDFSKLTGSSMLAAMGQAFFSLSLGMGTIMIYGSYVPKDTSIATTTIAIALADTAVALLAGMAIFPIVFANNLEPGSGPGLIFQTLPVAFGNMTGGIIFGSLFFILLLVAAWTSSISLIEPLVTWLIETFGMSRIKASLYSGVATWLLGLGTVWSFNLWADLKFFGLTFFDLLDFITSNLMLPLGGILIALFAGWIMSAEHTKAELYIANPLLYTAWQALVRYIAPVAVFIVLLNAIGIL 261          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A7K4E752_9EURY (Transporter n=1 Tax=Halobacteria archaeon TaxID=2670410 RepID=A0A7K4E752_9EURY)

HSP 1 Score: 291 bits (746), Expect = 2.110e-93
Identity = 153/272 (56.25%), Postives = 201/272 (73.90%), Query Frame = 1
Query:    1 LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDL-------TMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            +LL +L+GY  ++G F++ + FLFEPD S++T + VL AMG AFF+LS+  G+I++YG+Y+P N SI   +IA+S++DT +AL AG+AIFP+VFANG+ PA+GPGLIFQTLPIAFG M  G  F +LFFL+LVFAA+TS ISL+EP+VAW++E    TR  AA L G   WLVGL TVFSFNI S++K   +       T+F+L+DY TANIMLP+GGLL A+FA W + R     EL + D F YR WR  +RYITP  V IVFL+A+G+I
Sbjct:  189 VLLLLLVGYAWNSGSFQQGLDFLFEPDFSQITANGVLIAMGHAFFTLSLGMGAIMVYGSYLPDNASIAKTSIAVSVMDTLVALLAGMAIFPIVFANGLEPAAGPGLIFQTLPIAFGHMDGGAFFGMLFFLLLVFAAWTSAISLIEPAVAWMVENLGMTRIYAAGLAGFSTWLVGLLTVFSFNIWSEVKPLSMIPVFAESTIFDLLDYLTANIMLPLGGLLIAVFAAWQMKRKSSVDELAMGDGFFYRLWRVLVRYITPVAVAIVFLNAIGVI 460          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A2A4PGE0_9GAMM (Transporter n=2 Tax=Piscirickettsiaceae TaxID=135616 RepID=A0A2A4PGE0_9GAMM)

HSP 1 Score: 291 bits (744), Expect = 3.160e-93
Identity = 144/265 (54.34%), Postives = 198/265 (74.72%), Query Frame = 1
Query:    1 LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            ++L +L+GY V+ G F+E V FLF PD S++    +L AMG AFF+LS+  G+I++YG+Y+P  VSI S  I I+L DTA+AL AGL IFP+VFANG+ P SGPGLIFQTLPIAFG M++G  F  LFF++LVFAA++S+ISL+EP+VAW++E  + +R +A    G + W+ G+ TV SFN+ SDIKLFD T F+ +DY TANIMLP+GGL  A+FAGWV+ +     EL ++  +LY  WRF IR+++P  V+IVFL+ +G+I
Sbjct:  186 VILLLLVGYSVNQGAFQEGVAFLFTPDFSKINSDGILTAMGHAFFTLSLGMGAIMVYGSYLPGKVSIGSTVIIIALADTAVALLAGLVIFPIVFANGLEPGSGPGLIFQTLPIAFGHMAYGAFFGTLFFVLLVFAAWSSSISLIEPAVAWLVENKKMSRMRACIWAGLVTWVFGIGTVLSFNVASDIKLFDKTFFDTLDYLTANIMLPLGGLFIALFAGWVMKKEMSANELSLKYSWLYNVWRFLIRFVSPAAVIIVFLNVIGLI 450          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A1X1QQ93_9GAMM (Transporter n=1 Tax=Cycloclasticus sp. symbiont of Bathymodiolus heckerae TaxID=1284675 RepID=A0A1X1QQ93_9GAMM)

HSP 1 Score: 290 bits (742), Expect = 6.330e-93
Identity = 142/265 (53.58%), Postives = 202/265 (76.23%), Query Frame = 1
Query:    1 LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            +LL +L+GY +  G F+EAV FLF  D S++T   +L AMG AFF+LS+  G+I++YG+Y+P NVSI S A+ I+L DTA+AL AGLAIFP+VFANG+ P SGPGLIFQTLPIAFG M++G  F  LFF++LVFAA++S+ISL+EP+VAW++E  + +R +A    G + W+VG+ TV SFNI S+IK+FD T F+++DY TANIMLP+ GL  A+FAGWV+ +    +EL  +  +L+++W F +++++P  V+IVFL A+ +I
Sbjct:  186 VLLVLLVGYAIDQGAFKEAVSFLFSADFSKITSDGILIAMGHAFFTLSLGMGAIMVYGSYLPSNVSIGSTAVIIALADTAVALLAGLAIFPIVFANGLEPGSGPGLIFQTLPIAFGHMAYGSFFGTLFFILLVFAAWSSSISLIEPAVAWLVENKKMSRMRACIWSGLVTWIVGIGTVLSFNITSNIKIFDKTFFDVLDYLTANIMLPLAGLCIALFAGWVMTKESAEEELDFKQLYLFKTWLFLVKFVSPVAVVIVFLKAINVI 450          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A7Y4XX27_9GAMM (Transporter n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A7Y4XX27_9GAMM)

HSP 1 Score: 290 bits (742), Expect = 6.910e-93
Identity = 143/265 (53.96%), Postives = 200/265 (75.47%), Query Frame = 1
Query:    1 LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            +LL VL+GY ++TG + + +HFLF+PD S++TG+AVL AMG AFF+LS+  G+I++YGAY+P+NVSI   +I I+  D+ +AL AGLAIFP+VFAN + P+SGPGLIFQTLPIAFG M+ G++  +LFF+MLVFAA TS IS++EP+VAW++ET RF R  A    G  +WL+GL TVFSFN+ +DIK+FD T F+L+DY TAN+MLP+GG   AIF+GW++ +     EL   +   YR W+  +RY+ P  + +VFL  +G++
Sbjct:  189 VLLVVLVGYAMTTGAYAQGLHFLFKPDFSKITGNAVLIAMGHAFFTLSLGMGAIMVYGAYLPKNVSIAQTSILIAAADSIVALLAGLAIFPIVFANHLEPSSGPGLIFQTLPIAFGNMTGGWLIGILFFVMLVFAALTSAISVIEPAVAWLVETDRFDRKTACIWSGLTVWLLGLGTVFSFNVWADIKVFDKTFFQLLDYLTANLMLPIGGFCIAIFSGWIMLQKHSEAELAFSNPLYYRLWQNLVRYVAPVGIFLVFLHVVGVL 453          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: UPI00124D681D (sodium-dependent transporter n=1 Tax=Nitrincola alkalilacustris TaxID=1571224 RepID=UPI00124D681D)

HSP 1 Score: 289 bits (739), Expect = 3.010e-92
Identity = 142/265 (53.58%), Postives = 199/265 (75.09%), Query Frame = 1
Query:    1 LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            +LL V++GY + TGHF E V FLF+ D S++TG+A L A+G AFF+LS+A+G+I+ YG+Y+P NVSI    + I+++DT +ALAAGLAIFP+VFANG+ P +GPGLIF TLPIAFGQM FG  F  LFFL+L  AA TS ISLLEP+++W+ E F+ TR KA  L GG++WL GL  V S N+G++  LF  T F+++DY T++ ++P+GGLL AIF+GW+L +  ++ EL +    LY+ W F +RY+TP  ++IVFL A+G++
Sbjct:  202 VLLLVMVGYAMGTGHFAEGVSFLFKADFSKMTGTAFLVALGHAFFTLSLASGAIMTYGSYLPDNVSIGKTTLLIAIMDTVVALAAGLAIFPLVFANGLEPGAGPGLIFVTLPIAFGQMPFGSAFGTLFFLLLAIAALTSAISLLEPTISWLTEKFQMTRIKACLLAGGLLWLGGLGVVTSLNVGAEWTLFGKTFFDMLDYLTSSWLMPLGGLLMAIFSGWILKKTVMQDELGMGSGMLYQLWSFTMRYVTPLAIIIVFLHALGIV 466          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A2A5EAM3_9BACT (Transporter n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5EAM3_9BACT)

HSP 1 Score: 288 bits (736), Expect = 6.030e-92
Identity = 143/265 (53.96%), Postives = 192/265 (72.45%), Query Frame = 1
Query:    1 LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            L+L +L+GY ++TGHF E   FLF PD S++T S VL A+G AFF+LS+A+G+++ YGAY+P  VSI   +I ++L DT IAL AGL IFP+ F  G+ P  GP LIF +LPIAFGQM FG  F  LFF+MLVFAA TS I+LLEPSV W+ME  +FTR +AA L+GG +W++ L TVFS N GSDI LF  T F+ +DY TANI++P+GGLL A+F GW +     R+EL + D   +  W F +R++ P ++LIVFL+A+G++
Sbjct:  189 LILLILLGYSLNTGHFMEGASFLFRPDFSKITPSGVLQALGHAFFTLSLASGAMMAYGAYLPEKVSIAQTSIIVALADTMIALIAGLVIFPICFTYGLEPDEGPALIFISLPIAFGQMPFGLFFGTLFFIMLVFAAITSAIALLEPSVVWLMENRKFTRGRAASLLGGGLWILSLGTVFSLNYGSDITLFGKTYFDNVDYLTANILMPLGGLLVALFTGWAMKEAVTREELDLHDHPFFAFWLFTMRFVAPVLILIVFLNAIGIL 453          
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Match: A0A7C7CAR1_9GAMM (Transporter n=1 Tax=Chromatiaceae bacterium TaxID=2049432 RepID=A0A7C7CAR1_9GAMM)

HSP 1 Score: 288 bits (736), Expect = 7.380e-92
Identity = 147/272 (54.04%), Postives = 203/272 (74.63%), Query Frame = 1
Query:    1 LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIATGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSPASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAWVMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIK-------LFDLTMFELIDYFTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYITPCIVLIVFLDAMGMI 795
            +LL +L+GY  +TGHF EA+ FLF+PD S+L+  +VL AMG AFF+LS+  G+I++YG+Y+P NVSI   +I I+++DT +AL AG+AIFP+VFANG+ P SGPGLIF+TLPIAFG MSFG +F +LFFL+L FAA+TS ISL+EP+VAW++E    TR ++    G ++WLVGL +VFSFN+ S+ +         D   F+++D+ T+N+MLP+GGLL A+FA W L+R     EL++ D   Y  WRF +RYITP  VLIVFLDA+G++
Sbjct:  189 VLLFLLVGYAYTTGHFGEALEFLFKPDFSKLSAESVLIAMGHAFFTLSLGMGAIMVYGSYLPANVSIARTSIIIAVLDTLVALLAGMAIFPIVFANGLEPGSGPGLIFETLPIAFGHMSFGTLFGVLFFLLLSFAAWTSAISLIEPAVAWLVENRNMTRVQSTIWCGVVVWLVGLGSVFSFNLWSEFRPLGMFPVFADKNFFDVLDFITSNVMLPLGGLLIAVFAAWRLSRSTSFDELKMGDGLAYPLWRFLVRYITPIAVLIVFLDALGIL 460          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89260.20687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3MG89_9GAMM1.980e-10362.45Transporter n=1 Tax=Legionellales bacterium TaxID=... [more]
A0A7C1BNP2_9GAMM6.350e-9655.51Sodium-dependent transporter (Fragment) n=1 Tax=Ga... [more]
A0A524IGS8_9BACT1.630e-9554.02Sodium-dependent transporter (Fragment) n=1 Tax=Ni... [more]
A0A7K4E752_9EURY2.110e-9356.25Transporter n=1 Tax=Halobacteria archaeon TaxID=26... [more]
A0A2A4PGE0_9GAMM3.160e-9354.34Transporter n=2 Tax=Piscirickettsiaceae TaxID=1356... [more]
A0A1X1QQ93_9GAMM6.330e-9353.58Transporter n=1 Tax=Cycloclasticus sp. symbiont of... [more]
A0A7Y4XX27_9GAMM6.910e-9353.96Transporter n=1 Tax=Methylococcaceae bacterium Tax... [more]
UPI00124D681D3.010e-9253.58sodium-dependent transporter n=1 Tax=Nitrincola al... [more]
A0A2A5EAM3_9BACT6.030e-9253.96Transporter n=1 Tax=Candidatus Hydrogenedentes bac... [more]
A0A7C7CAR1_9GAMM7.380e-9254.04Transporter n=1 Tax=Chromatiaceae bacterium TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89260contigM-pyrifera_M_contig89260:9..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score283.9
Seed ortholog evalue7.8e-74
Seed eggNOG ortholog400668.Mmwyl1_2101
KEGG koko:K03308
KEGG TC2.A.22.4,2.A.22.5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family
EggNOG OGs1MUZJ@1224,1RPCT@1236,1XIBY@135619,COG0733@1,COG0733@2
COG Functional cat.S
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size798
Cds size798
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.6162174-CDS-M-pyrifera_M_contig89260:8..8061622816802.6162174-CDS-M-pyrifera_M_contig89260:8..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89260 9..806 -
1692278187.5513017-CDS-M-pyrifera_M_contig89260:8..8061692278187.5513017-CDS-M-pyrifera_M_contig89260:8..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89260 9..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89260.20687.1prot_M-pyrifera_M_contig89260.20687.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89260 9..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89260.20687.1

>prot_M-pyrifera_M_contig89260.20687.1 ID=prot_M-pyrifera_M_contig89260.20687.1|Name=mRNA_M-pyrifera_M_contig89260.20687.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=266bp
LLLCVLIGYGVSTGHFREAVHFLFEPDLSELTGSAVLAAMGQAFFSLSIA
TGSIIMYGAYVPRNVSITSAAIAISLVDTAIALAAGLAIFPVVFANGMSP
ASGPGLIFQTLPIAFGQMSFGYIFALLFFLMLVFAAFTSTISLLEPSVAW
VMETFRFTRAKAAWLMGGIIWLVGLTTVFSFNIGSDIKLFDLTMFELIDY
FTANIMLPVGGLLTAIFAGWVLNRHFVRKELQVEDRFLYRSWRFAIRYIT
PCIVLIVFLDAMGMI*
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mRNA from alignment at M-pyrifera_M_contig89260:9..806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89260.20687.1 ID=mRNA_M-pyrifera_M_contig89260.20687.1|Name=mRNA_M-pyrifera_M_contig89260.20687.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig89260:9..806- (Macrocystis pyrifera P11B4 male)
CTTTTGTTGTGTGTATTAATAGGGTACGGCGTTAGCACGGGCCATTTCCG CGAAGCTGTTCACTTTTTATTTGAACCTGATTTATCTGAACTAACCGGAT CTGCGGTTTTGGCGGCGATGGGCCAAGCCTTTTTCTCGCTGAGCATTGCA ACCGGTAGCATCATTATGTACGGTGCATATGTGCCACGTAACGTTTCTAT TACATCAGCAGCTATTGCTATATCACTTGTAGATACAGCGATTGCGTTAG CAGCAGGACTTGCCATCTTTCCTGTGGTGTTTGCTAATGGAATGTCACCA GCATCAGGTCCAGGCTTGATTTTTCAGACGCTACCAATTGCGTTCGGACA AATGTCCTTCGGTTATATTTTCGCCTTGTTATTCTTTTTAATGTTAGTGT TTGCAGCATTTACGTCTACCATTTCATTATTAGAGCCTTCGGTTGCCTGG GTGATGGAAACTTTCCGATTTACACGCGCAAAAGCAGCTTGGTTAATGGG CGGTATTATTTGGCTAGTTGGTTTAACAACGGTCTTCTCATTCAATATAG GATCAGATATTAAACTATTCGATTTAACTATGTTTGAGTTAATTGACTAT TTTACGGCAAATATAATGTTACCCGTCGGCGGTTTGCTAACGGCTATTTT TGCCGGTTGGGTGCTTAATCGCCATTTTGTACGCAAAGAATTACAAGTTG AAGATAGGTTCTTATACCGCAGTTGGCGTTTTGCAATTCGTTATATTACC CCCTGCATTGTTCTTATTGTTTTCTTAGATGCAATGGGGATGATCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89260:9..806-

>mRNA_M-pyrifera_M_contig89260.20687.1 ID=mRNA_M-pyrifera_M_contig89260.20687.1|Name=mRNA_M-pyrifera_M_contig89260.20687.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1596bp|location=Sequence derived from alignment at M-pyrifera_M_contig89260:9..806- (Macrocystis pyrifera P11B4 male)
CTTTTGTTGTGTGTATTAATAGGGTACGGCGTTAGCACGGGCCATTTCCG
CGAAGCTGTTCACTTTTTATTTGAACCTGATTTATCTGAACTAACCGGAT
CTGCGGTTTTGGCGGCGATGGGCCAAGCCTTTTTCTCGCTGAGCATTGCA
ACCGGTAGCATCATTATGTACGGTGCATATGTGCCACGTAACGTTTCTAT
TACATCAGCAGCTATTGCTATATCACTTGTAGATACAGCGATTGCGTTAG
CAGCAGGACTTGCCATCTTTCCTGTGGTGTTTGCTAATGGAATGTCACCA
GCATCAGGTCCAGGCTTGATTTTTCAGACGCTACCAATTGCGTTCGGACA
AATGTCCTTCGGTTATATTTTCGCCTTGTTATTCTTTTTAATGTTAGTGT
TTGCAGCATTTACGTCTACCATTTCATTATTAGAGCCTTCGGTTGCCTGG
GTGATGGAAACTTTCCGATTTACACGCGCAAAAGCAGCTTGGTTAATGGG
CGGTATTATTTGGCTAGTTGGTTTAACAACGGTCTTCTCATTCAATATAG
GATCAGATATTAAACTATTCGATTTAACTATGTTTGAGTTAATTGACTAT
TTTACGGCAAATATAATGTTACCCGTCGGCGGTTTGCTAACGGCTATTTT
TGCCGGTTGGGTGCTTAATCGCCATTTTGTACGCAAAGAATTACAAGTTG
AAGATAGGTTCTTATACCGCAGTTGGCGTTTTGCAATTCGTTATATTACC
CCCTGCATTGTTCTTATTGTTTTCTTAGATGCAATGGGGATGATCTGACT
TTTGTTGTGTGTATTAATAGGGTACGGCGTTAGCACGGGCCATTTCCGCG
AAGCTGTTCACTTTTTATTTGAACCTGATTTATCTGAACTAACCGGATCT
GCGGTTTTGGCGGCGATGGGCCAAGCCTTTTTCTCGCTGAGCATTGCAAC
CGGTAGCATCATTATGTACGGTGCATATGTGCCACGTAACGTTTCTATTA
CATCAGCAGCTATTGCTATATCACTTGTAGATACAGCGATTGCGTTAGCA
GCAGGACTTGCCATCTTTCCTGTGGTGTTTGCTAATGGAATGTCACCAGC
ATCAGGTCCAGGCTTGATTTTTCAGACGCTACCAATTGCGTTCGGACAAA
TGTCCTTCGGTTATATTTTCGCCTTGTTATTCTTTTTAATGTTAGTGTTT
GCAGCATTTACGTCTACCATTTCATTATTAGAGCCTTCGGTTGCCTGGGT
GATGGAAACTTTCCGATTTACACGCGCAAAAGCAGCTTGGTTAATGGGCG
GTATTATTTGGCTAGTTGGTTTAACAACGGTCTTCTCATTCAATATAGGA
TCAGATATTAAACTATTCGATTTAACTATGTTTGAGTTAATTGACTATTT
TACGGCAAATATAATGTTACCCGTCGGCGGTTTGCTAACGGCTATTTTTG
CCGGTTGGGTGCTTAATCGCCATTTTGTACGCAAAGAATTACAAGTTGAA
GATAGGTTCTTATACCGCAGTTGGCGTTTTGCAATTCGTTATATTACCCC
CTGCATTGTTCTTATTGTTTTCTTAGATGCAATGGGGATGATCTGA
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