mRNA_M-pyrifera_M_contig8907.20653.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8907.20653.1
Unique NamemRNA_M-pyrifera_M_contig8907.20653.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: D8LC10_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC10_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 7.450e-52
Identity = 80/88 (90.91%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V+IDQVFWAPIFTLIFFTWIG+TSGASPSEI  K+KSDL+QGVVGSWTVWPLAHTINFK+VPTEQRLLYINSIQIFYNVFLSIIGSK
Sbjct:  208 KVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: A0A836CE62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE62_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.320e-37
Identity = 59/88 (67.05%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V  DQV WAPIFT ++ TW+G+TSG SP E+  KIK+DL++GVVGSW+VWPL H I FK+VP EQRLLYIN IQI YNVFLS++GS 
Sbjct:  197 KVFTDQVLWAPIFTFVYLTWMGVTSGLSPPEVGEKIKTDLVKGVVGSWSVWPLVHAIGFKFVPLEQRLLYINCIQIGYNVFLSVLGSN 284          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: A0A7S2FYX3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYX3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.690e-35
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V IDQV W PIF ++FF+++G T+G  P+ +A K+K DL+  V GSWTVWP+AH INF+++PT QRLLYIN+IQIFYNVFLSIIG+K
Sbjct:  167 KVGIDQVLWNPIFGVMFFSYMGFTNGDGPAAVAAKVKRDLMTQVTGSWTVWPIAHAINFRFIPTSQRLLYINTIQIFYNVFLSIIGNK 254          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: A0A835Z5E2_9STRA (Peroxisomal membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.330e-32
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V IDQ  W PIF ++FF+++G+T G S  +I  KIK+DL   V+GSWTVW  AHTINFK+VPT QRLLYINSIQI YNVFLS +G+K
Sbjct:   87 KVAIDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQIGYNVFLSFLGNK 174          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: A0A7S2V4A9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.790e-32
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V IDQ+FW PIF  +FFT++G+  G S  EI  KIKSDL   V+GSWTVW  AH INFK+VP+ QRLLYIN+IQI YN+FLS +G+K
Sbjct:   87 KVAIDQLFWNPIFGTVFFTYLGLAEGKSGGEIVNKIKSDLKTAVMGSWTVWVPAHIINFKFVPSSQRLLYINTIQIGYNIFLSFLGNK 174          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: W7TZ10_9STRA (Mpv17/PMP22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ10_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.320e-32
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V+IDQV WAP+FT+IFF WI +  GA   +I  KI  DL++GV  SW VWPL H INF+++P +QRLLYIN+IQI YNVFLS++ S+
Sbjct:  165 KVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: D8LGB2_ECTSI (Peroxisomal membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.190e-31
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V IDQ  W PIF ++FFT++G+  G S  +I  KIK+DL   V+GSWTVW  AHTINFK+VPT QRLLYIN+IQI YN+FLS +G+K
Sbjct:   87 KVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYNIFLSFLGNK 174          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: A0A5J4YL21_PORPP (Protein sym-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YL21_PORPP)

HSP 1 Score: 118 bits (295), Expect = 1.460e-30
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V IDQ+ WAPIFT++FF +IG   G S  +I  K+K D   GV GSW VWPL HTINF+++P+ QRLLYIN+IQI YN+FLS+I +K
Sbjct:  200 KVAIDQILWAPIFTVMFFAFIGAMEGRSVDDIKQKVKRDTWTGVTGSWKVWPLVHTINFRFIPSSQRLLYINTIQIAYNMFLSLIANK 287          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: A0A1X6P926_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P926_PORUM)

HSP 1 Score: 115 bits (287), Expect = 2.650e-30
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V  DQ+ WAPIFT ++F+++G+  G S   I  KI++D + GV  SW VWP+ H ++F++VPTE R+LYINSIQIFYN+FLS++G+K
Sbjct:  113 KVAADQLLWAPIFTAMYFSYLGLAEGRSMDYIQAKIQNDTMAGVTASWKVWPIVHAVSFRFVPTELRILYINSIQIFYNIFLSVLGNK 200          
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Match: A0A7S2RA66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.740e-30
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTVWPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK 264
            +V+IDQVFW P F ++FFT++G+  G S ++I  KIK+DL   V+GSW VW  AHTINF ++P  QRLLYINSIQI YN+FLS +G+K
Sbjct:   96 KVLIDQVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNIFLSFLGNK 183          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8907.20653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC10_ECTSI7.450e-5290.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CE62_9STRA3.320e-3767.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FYX3_9STRA7.690e-3563.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835Z5E2_9STRA1.330e-3263.64Peroxisomal membrane protein-related n=1 Tax=Tribo... [more]
A0A7S2V4A9_9STRA1.790e-3262.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TZ10_9STRA5.320e-3259.09Mpv17/PMP22 n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
D8LGB2_ECTSI1.190e-3161.36Peroxisomal membrane protein-related n=1 Tax=Ectoc... [more]
A0A5J4YL21_PORPP1.460e-3059.09Protein sym-1 n=1 Tax=Porphyridium purpureum TaxID... [more]
A0A1X6P926_PORUM2.650e-3053.41Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
A0A7S2RA66_9STRA2.740e-3059.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8907contigM-pyrifera_M_contig8907:506..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D8LC10
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.8083608-CDS-M-pyrifera_M_contig8907:505..7721622816800.8083608-CDS-M-pyrifera_M_contig8907:505..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8907 506..772 -
1692278186.359854-CDS-M-pyrifera_M_contig8907:505..7721692278186.359854-CDS-M-pyrifera_M_contig8907:505..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8907 506..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8907.20653.1prot_M-pyrifera_M_contig8907.20653.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8907 506..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8907.20653.1

>prot_M-pyrifera_M_contig8907.20653.1 ID=prot_M-pyrifera_M_contig8907.20653.1|Name=mRNA_M-pyrifera_M_contig8907.20653.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
QVVIDQVFWAPIFTLIFFTWIGITSGASPSEIATKIKSDLIQGVVGSWTV
WPLAHTINFKYVPTEQRLLYINSIQIFYNVFLSIIGSK*
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mRNA from alignment at M-pyrifera_M_contig8907:506..772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8907.20653.1 ID=mRNA_M-pyrifera_M_contig8907.20653.1|Name=mRNA_M-pyrifera_M_contig8907.20653.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig8907:506..772- (Macrocystis pyrifera P11B4 male)
CAGGTGGTGATTGACCAGGTTTTCTGGGCTCCCATCTTCACTCTGATCTT CTTCACGTGGATTGGAATCACCTCGGGGGCCTCTCCCAGCGAGATCGCTA CGAAGATCAAGAGCGACCTCATTCAGGGGGTGGTGGGCTCGTGGACGGTG TGGCCCCTGGCCCACACGATCAACTTCAAGTACGTGCCGACGGAACAACG CCTTCTGTACATCAACTCCATCCAGATCTTCTACAATGTGTTCCTGTCGA TCATCGGGTCTAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8907:506..772-

>mRNA_M-pyrifera_M_contig8907.20653.1 ID=mRNA_M-pyrifera_M_contig8907.20653.1|Name=mRNA_M-pyrifera_M_contig8907.20653.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig8907:506..772- (Macrocystis pyrifera P11B4 male)
CAGGTGGTGATTGACCAGGTTTTCTGGGCTCCCATCTTCACTCTGATCTT
CTTCACGTGGATTGGAATCACCTCGGGGGCCTCTCCCAGCGAGATCGCTA
CGAAGATCAAGAGCGACCTCATTCAGGGGGTGGTGGGCTCGTGGACGGTG
TGGCCCCTGGCCCACACGATCAACTTCAAGTACGTGCCGACGGAACAACG
CCTTCTGTACATCAACTCCATCCAGATCTTCTACAATGTGTTCCTGTCGA
TCATCGGGTCTAAGTAACAGGTGGTGATTGACCAGGTTTTCTGGGCTCCC
ATCTTCACTCTGATCTTCTTCACGTGGATTGGAATCACCTCGGGGGCCTC
TCCCAGCGAGATCGCTACGAAGATCAAGAGCGACCTCATTCAGGGGGTGG
TGGGCTCGTGGACGGTGTGGCCCCTGGCCCACACGATCAACTTCAAGTAC
GTGCCGACGGAACAACGCCTTCTGTACATCAACTCCATCCAGATCTTCTA
CAATGTGTTCCTGTCGATCATCGGGTCTAAGTAA
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