mRNA_M-pyrifera_M_contig88780.20607.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88780.20607.1
Unique NamemRNA_M-pyrifera_M_contig88780.20607.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: A0A0L0HQP8_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HQP8_SPIPD)

HSP 1 Score: 99.4 bits (246), Expect = 5.010e-21
Identity = 62/172 (36.05%), Postives = 92/172 (53.49%), Query Frame = 1
Query:    1 SLRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQLKVLLQRAQEEXXXXXXXXXXXXXXXXXXXGDGDGEMWKVILDTGSEEYFAALSALVGAFGFQGVDASSVEDAEVAKTLPRLLYYSTSAATVNACAALARSNAVDPALTCALIDRADGL 516
            ++RVFLGD  Q   TGGG + TLRQRV F  EVD++IDS+ PIL  +++W  ++                                  ++ KV+ +T S+EYF  L+AL+  +GF  +D S V   +  K LPRL+YY  + +TVNA  A+  ++ +DP   C +ID  +GL
Sbjct:  379 TVRVFLGDMLQKGQTGGGMEYTLRQRVKFRHEVDILIDSKLPILTEIIKWADKIAA-----------------------------PGWQLRKVVFETDSQEYFHNLTALLKIYGFTVLDISQVSPEDAGK-LPRLVYYRRTGSTVNAFRAILDADPIDPGRICVVIDTKEGL 520          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: A0A7S2W5N0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5N0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-20
Identity = 62/175 (35.43%), Postives = 98/175 (56.00%), Query Frame = 1
Query:    4 LRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQLKVLLQRAQEEXXXXXXXXXXXXXXXXXXXGDGDGEMWKVI-LDTGSEEYFAALSALVGAFGFQGVDASSVEDAEVAKTLPRLLYYSTSAATVNACAALARSNAVDPALTCALIDRADGLIEL 525
            LRV LGD+ Q  ++GGG   TLR+RV    E DV+IDSRA ++L L++W  ++   L+R++++                           + +  DT  ++YFA LS+L+ A+G+Q +D   V   + A  +PR++YY T+A TVN   +LARS  +D   TC ++D+  G+ EL
Sbjct:  380 LRVVLGDSMQANYSGGGYRYTLRERVLVHNEADVLIDSRAAVILELVKWCARV---LRRSKDDDQPLVKPGTTDKAGQDDEQPSVRPVRGRTLCFDTSEKDYFANLSSLMLAYGYQIIDIGDVPAEDKATPVPRIVYYRTTAETVNRVFSLARSKTIDLTRTCVVVDKEQGVKEL 551          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: A0A507DUQ8_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DUQ8_9FUNG)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-15
Identity = 57/146 (39.04%), Postives = 76/146 (52.05%), Query Frame = 1
Query:    4 LRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQLKVLLQRAQEEXXXXXXXXXXXXXXXXXXXGDGDGEMWKVILDTGSEEYFAALSALVGAFGFQGVDASSVEDAEVAKTLPRLLYYSTSAATVNA 441
            +RVFLGD  Q   TGGG + TLRQRV F  EVD+++DS+ PIL  ++ W    KV     Q+                            KV+ +T S+EY+  LS L+  +GF  +D S V  A+ A  LPRL+YY  +A TVNA
Sbjct:  383 VRVFLGDVLQKNTTGGGNEYTLRQRVRFRHEVDILVDSKLPILTKIIEWSD--KVAAPGWQKR---------------------------KVVFETDSQEYYHNLSTLLKTYGFTVLDISEVT-AKEADQLPRLIYYRRTAGTVNA 498          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: K3X875_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X875_GLOUD)

HSP 1 Score: 77.4 bits (189), Expect = 2.140e-13
Identity = 68/187 (36.36%), Postives = 90/187 (48.13%), Query Frame = 1
Query:    1 SLRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRW----LGQLKVLLQRAQEEXXXXXXXXXXXXXXXXXXXGDGDGEMWKVILDTGSEEYFA-------ALSALVGAFGFQGVDASSVEDAEVAKTLPRLLYYSTSAATVNAC-AALARSNAVDPALTCALIDRADGLIEL 525
            SL VFLGD+ QL  TGG   +TLR RV   KEVDV+ID++AP+LL +L+W    +G+ K ++  A                             + V+    S EY         A++A  GA      DAS   D      LPRL+YY T+AAT+NA  + L+  N VDP   C LI+   GL  L
Sbjct:  362 SLCVFLGDSLQLCDTGGKSFVTLRDRVRLKKEVDVLIDAKAPLLLEILKWCARFVGKRKTIVLDATPLNYAPLQLLLERNG-------------YTVVDPLESSEYLEQEKQVSEAIAATAGANSDS--DASKKPD-----KLPRLIYYPTTAATINAVHSVLSTGNTVDPKRCCVLINSPFGLAHL 528          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: A0A7S4FKS2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FKS2_9EUGL)

HSP 1 Score: 76.3 bits (186), Expect = 4.190e-13
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 1
Query:    4 LRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQLKVLLQRAQEEXXXXXXXXXXXXXXXXXXXGDGDGEMWKVILDTGSE-----EYFAALSAL--VGAFGFQGVDASS----VEDAEVAKTLP-------RLLYYSTSAATVNACAALARSNAVDPALTCALIDRADGLIEL 525
            LRVFLGD+ +   T GG+ ITLR+R +  +EVDV +DSRAP+LLALLRW  +    +   +E                    G    E    ++D+ +E     EY  AL+ L  +GA     +DAS+    +++     TLP       RL+YY+T+  +V A   L  +   DP   C L+DR  GL E+
Sbjct:  174 LRVFLGDSLEKHKTAGGKTITLRERANRRREVDVFVDSRAPVLLALLRWCKR----ITEGEEHKEIVLDTDPEYYAVLQQLLG----EYGYTVIDSSAEATVQQEYRRALADLQRLGA-----LDASNPTPRLKEGHQDCTLPPPPRVCPRLIYYATTHKSVMAVKVLTNAGIADPKRCCVLLDRYTGLSEI 352          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: A0A7S3DN20_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DN20_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.190e-12
Identity = 61/223 (27.35%), Postives = 95/223 (42.60%), Query Frame = 1
Query:    1 SLRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQLKVLLQRAQEEXXXXXXXXXXXXXXXXXXXGDGDGEMWKVILDTGSEEYFAALSALVGAFGFQGVDA-------------------------------------SSVEDAEVAKT-----------LPRLLYYSTSAATVNACAALARSNAVDPALTCALIDRADGLIEL 525
            +LRV+LG++ +L  TGGG   T+R R++F+KE DV+IDSRAP+L  +L W  +     +R+                          G    ++  T S  YF  L AL+G +G++  D                                       +  DAE+ +T           LPRL++++T+A TV A  ++  +  VD    C LIDR +G+  L
Sbjct:  134 TLRVYLGNSMELKKTGGGHSYTVRDRIEFAKEFDVLIDSRAPVLQRILDWCERATASAKRS--------------------------GRKRCILFQTSSRTYFLNLKALLGHYGYEIYDPMDLGSHGQKEDLITQAQEGALLLDQSNLPIEDIVGRLDATRDAEIDQTVDEMIRKKFLNLPRLIHFATTAETVCAVESMILAGEVDARNCCVLIDREEGVSSL 330          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: L8H068_ACACA (Uncharacterized protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H068_ACACA)

HSP 1 Score: 74.7 bits (182), Expect = 1.850e-12
Identity = 56/171 (32.75%), Postives = 79/171 (46.20%), Query Frame = 1
Query:    4 LRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQLKVLLQRAQEEXXXXXXXXXXXXXXXXXXXGDGDGEMWKVILDTGSEEYFAALSALVGAFGFQGVDASSVEDAEVAKTLPRLLYYSTSAATVNACAALARSNAVDPALTCALIDRADGL 516
            +RV L D +    TGGG   T+  RV   +EVDV+IDS+AP+L A+L W    K     A  +                           K++ DT +  YF  L  L+  FGF+ +DA   E  +  +T PRL+Y  T+  T+N   +L     V     CAL+DR +GL
Sbjct:  321 IRVLLADPQMSIETGGGNRYTVADRVRELREVDVLIDSKAPLLRAILDWANG-KFTAGAATHDGNEQPVGRTQPDEPDERPGPSRK----KIVFDTTNRGYFRTLRGLLSNFGFEVLDARDTERYDP-RTTPRLVYMETTFDTLNTIRSLVNVGLVPANQCCALVDRKEGL 485          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: A0A5A8D0I8_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D0I8_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 5.970e-11
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    4 LRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQLKVLLQRAQEE 192
            LRV LGD+ +   TGGG  +T+R+R+ F+ E DVV+DSRAPILLALLRWLG ++  ++ A  E
Sbjct:  684 LRVVLGDSLRPLTTGGGGKMTVRERIAFTGEADVVVDSRAPILLALLRWLGAVRQRIRLAAAE 746          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: A0A7R9WH95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WH95_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.150e-10
Identity = 40/116 (34.48%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    1 SLRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQLKVLLQRAQEEXXXXXXXXXXXXXXXXXXXGDGDGEMWKVILDTGSEEYFAALSALVGAFGFQ 348
            +L+V+LG++ ++ H+GGG   TLR RV +SKEVD++IDSRAPIL  +LRW  ++     R ++                       D E   V+  T S +YF +L  L+  +G++
Sbjct:  212 ALKVYLGNSLEVEHSGGGHTFTLRHRVKYSKEVDILIDSRAPILREVLRWCDRVTA-GSRGKDSP---------------------DDEKKIVLFQTSSRQYFLSLKLLMRNYGYE 305          
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Match: A0A2D4C1H9_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1H9_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 4.700e-10
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 SLRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRWLGQ 159
            SL VFLGD+ QL  TGG   +TLR+R+   KEVDV+ID++AP+LLA+L+W G+
Sbjct:  352 SLTVFLGDSLQLCDTGGTSFVTLRERIRLKKEVDVLIDAKAPLLLAILKWCGR 404          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88780.20607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A0L0HQP8_SPIPD5.010e-2136.05Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A7S2W5N0_9STRA1.720e-2035.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A507DUQ8_9FUNG1.160e-1539.04Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
K3X875_GLOUD2.140e-1336.36Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S4FKS2_9EUGL4.190e-1334.38Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S3DN20_9STRA1.190e-1227.35Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
L8H068_ACACA1.850e-1232.75Uncharacterized protein (Fragment) n=1 Tax=Acantha... [more]
A0A5A8D0I8_CAFRO5.970e-1155.56Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A7R9WH95_9STRA3.150e-1034.48Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A2D4C1H9_PYTIN4.700e-1058.49Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88780contigM-pyrifera_M_contig88780:2..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score102.4
Seed ortholog evalue2.1e-19
Seed eggNOG ortholog109760.SPPG_00912T0
Hectar predicted targeting categoryother localisation
EggNOG OGs29PIN@1,2RWW7@2759,3AJSV@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.89024-CDS-M-pyrifera_M_contig88780:1..2571622816797.89024-CDS-M-pyrifera_M_contig88780:1..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88780 2..257 +
1692278184.6547673-CDS-M-pyrifera_M_contig88780:1..2571692278184.6547673-CDS-M-pyrifera_M_contig88780:1..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88780 2..257 +
1622816797.9018908-CDS-M-pyrifera_M_contig88780:485..7541622816797.9018908-CDS-M-pyrifera_M_contig88780:485..754Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88780 486..754 +
1692278184.6664608-CDS-M-pyrifera_M_contig88780:485..7541692278184.6664608-CDS-M-pyrifera_M_contig88780:485..754Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88780 486..754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88780.20607.1prot_M-pyrifera_M_contig88780.20607.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88780 2..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88780.20607.1

>prot_M-pyrifera_M_contig88780.20607.1 ID=prot_M-pyrifera_M_contig88780.20607.1|Name=mRNA_M-pyrifera_M_contig88780.20607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
SLRVFLGDTRQLFHTGGGEDITLRQRVDFSKEVDVVIDSRAPILLALLRW
LGQLKVLLQRAQEEREEEEEEEGEEEGGEEEEEGDGDGEMWKVILDTGSE
EYFAALSALVGAFGFQGVDASSVEDAEVAKTLPRLLYYSTSAATVNACAA
LARSNAVDPALTCALIDRADGLIEL
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mRNA from alignment at M-pyrifera_M_contig88780:2..754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88780.20607.1 ID=mRNA_M-pyrifera_M_contig88780.20607.1|Name=mRNA_M-pyrifera_M_contig88780.20607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=753bp|location=Sequence derived from alignment at M-pyrifera_M_contig88780:2..754+ (Macrocystis pyrifera P11B4 male)
TCTCTGCGCGTTTTCTTGGGCGATACACGACAGCTCTTCCACACCGGAGG TGGAGAAGACATTACGCTGCGACAAAGGGTGGATTTCTCCAAGGAAGTTG ACGTGGTCATTGACTCCAGAGCCCCGATCCTCCTCGCCCTCCTCCGCTGG CTCGGGCAACTCAAAGTGCTCTTGCAACGCGCACAGGAGGAAAGAGAGGA GGAGGAGGAAGAGGAAGGGGAGGAGGAAGGGGGGGAGGAGGAAGAAGAGG GGGATGGTGGAGATGAGGAAAAGGGGGAGAAAGTGAGGAGGAGGAAGAAG AAGGTGTCAAGGAAAGAAAGGTTGAAGGCGTTGCGAAAAGCAGCAGAAGC GATGAGGATGGGTGTGGCAGCTGATGGAGATGTTGATGCTTGGTCAAAGC CGCAAGAGGTACTGGCCATGTTGTCTCGATGGGAAACTGTGCCTGACAAG GAAGGTGATGATGGAGTGGAGATGGAGGAGGAAGGGGACGGGGAGATGTG GAAAGTGATTTTGGACACTGGATCAGAAGAGTACTTTGCAGCGTTGAGTG CATTGGTGGGGGCATTTGGATTCCAAGGTGTAGATGCTTCTTCTGTGGAA GATGCAGAGGTCGCAAAGACGTTGCCAAGGTTACTCTATTACTCTACCTC AGCGGCAACTGTAAATGCTTGTGCTGCATTAGCGAGAAGTAATGCTGTGG ATCCAGCTCTCACTTGTGCGCTTATTGACAGAGCTGATGGTCTCATTGAA TTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88780:2..754+

>mRNA_M-pyrifera_M_contig88780.20607.1 ID=mRNA_M-pyrifera_M_contig88780.20607.1|Name=mRNA_M-pyrifera_M_contig88780.20607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig88780:2..754+ (Macrocystis pyrifera P11B4 male)
TCTCTGCGCGTTTTCTTGGGCGATACACGACAGCTCTTCCACACCGGAGG
TGGAGAAGACATTACGCTGCGACAAAGGGTGGATTTCTCCAAGGAAGTTG
ACGTGGTCATTGACTCCAGAGCCCCGATCCTCCTCGCCCTCCTCCGCTGG
CTCGGGCAACTCAAAGTGCTCTTGCAACGCGCACAGGAGGAAAGAGAGGA
GGAGGAGGAAGAGGAAGGGGAGGAGGAAGGGGGGGAGGAGGAAGAAGAGG
GGGATGTCTCTGCGCGTTTTCTTGGGCGATACACGACAGCTCTTCCACAC
CGGAGGTGGAGAAGACATTACGCTGCGACAAAGGGTGGATTTCTCCAAGG
AAGTTGACGTGGTCATTGACTCCAGAGCCCCGATCCTCCTCGCCCTCCTC
CGCTGGCTCGGGCAACTCAAAGTGCTCTTGCAACGCGCACAGGAGGAAAG
AGAGGAGGAGGAGGAAGAGGAAGGGGAGGAGGAAGGGGGGGAGGAGGAAG
AAGAGGGGGATGGGGACGGGGAGATGTGGAAAGTGATTTTGGACACTGGA
TCAGAAGAGTACTTTGCAGCGTTGAGTGCATTGGTGGGGGCATTTGGATT
CCAAGGTGTAGATGCTTCTTCTGTGGAAGATGCAGAGGTCGCAAAGACGT
TGCCAAGGTTACTCTATTACTCTACCTCAGCGGCAACTGTAAATGCTTGT
GCTGCATTAGCGAGAAGTAATGCTGTGGATCCAGCTCTCACTTGTGCGCT
TATTGACAGAGCTGATGGTCTCATTGAATTAGGGACGGGGAGATGTGGAA
AGTGATTTTGGACACTGGATCAGAAGAGTACTTTGCAGCGTTGAGTGCAT
TGGTGGGGGCATTTGGATTCCAAGGTGTAGATGCTTCTTCTGTGGAAGAT
GCAGAGGTCGCAAAGACGTTGCCAAGGTTACTCTATTACTCTACCTCAGC
GGCAACTGTAAATGCTTGTGCTGCATTAGCGAGAAGTAATGCTGTGGATC
CAGCTCTCACTTGTGCGCTTATTGACAGAGCTGATGGTCTCATTGAATTA
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