mRNA_M-pyrifera_M_contig88696.20596.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88696.20596.1
Unique NamemRNA_M-pyrifera_M_contig88696.20596.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A814V2A4_9BILA (Gamma-glutamylcyclotransferase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814V2A4_9BILA)

HSP 1 Score: 72.4 bits (176), Expect = 1.620e-12
Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   22 RRKIEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGALTHGVLHKLSPQDFYSLWLFERS-------YEAPIATAELYDGSTVECRIFSAPHAMAPG-----RSPSARYMNLVLEGAVQYGVDEQWLAHLRRIPT 405
            RRKI   ES+P +++ ++L+F + G+  VEP F N+K    +  HGVLHK++ +DF  L   ER        Y         YDG  +E         ++PG       PS RY+ L+  GA  Y +   ++ +L+ +P+
Sbjct:   37 RRKIHPIESIPGILKGWQLTFDLGGIPAVEPCFGNIKENPHSEIHGVLHKMTEKDFKHLMATERGSGVDANGYIPHKVNVYAYDGRIIEAYALVVRQ-ISPGIVNHHTLPSVRYIGLLRNGAKHYKIHPLYIEYLQSLPS 175          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A3D5JAH4_9DELT (GGACT domain-containing protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D5JAH4_9DELT)

HSP 1 Score: 69.7 bits (169), Expect = 1.050e-11
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   22 RRKIEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGALTHGVLHKLSPQDFYSLWLFE---RSYEAPIATAELYDGSTVECRIFSAPHA--MAPGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIP 402
            R  +   ES PA ++ + L+F++ G+  +EP+ A ++P  G   HGVL +LSP+DF  L   E   +SY       E Y G   +  +F A  A  +   R P+ RY+ L+  GA    +D +++  L  IP
Sbjct:   35 RANLVIKESFPAKLKGWRLAFNLRGISWLEPSMAGVEPDPGETVHGVLVRLSPEDFAKLVQSEGGDQSYARETVEVETYCGKVQKAVVFRALEARKLPQDRPPTLRYLELIRTGARLNSLDPEYIEKLDAIP 166          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A2D4RQZ6_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D4RQZ6_9DELT)

HSP 1 Score: 68.9 bits (167), Expect = 2.030e-11
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    7 DSVWKRRKIEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGALTHGVLHKLSPQDFYSLWLFE---RSYEAPIATAELYDGSTVECRIFSAPHA--MAPGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIP 402
            D +  R  +   ES PA ++ + L+F++ G+  +EP+ A ++P      HGVL +LS +DF  L   E   +SY +     E Y G   +  +F A  A  +A  R P+ RY+ L+  GA   G+D +++  L  +P
Sbjct:   30 DKLKGRANLVIKESFPAKLKGWRLAFNLQGISWLEPSMAGVEPDPEETVHGVLVRLSAEDFAKLVQSEGGDQSYASEAVEVETYCGKVQKAFVFRALEARKLAQDRPPTLRYLELIRTGARLNGLDPEYIEKLDALP 166          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A1F5L5M1_9EURO (Dipeptidase n=1 Tax=Penicillium arizonense TaxID=1835702 RepID=A0A1F5L5M1_9EURO)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-10
Identity = 47/149 (31.54%), Postives = 74/149 (49.66%), Query Frame = 1
Query:    1 MNDSVWKRRKIEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPK-----EGAL-----THGVLHKLSPQDFYSLWLFERS---YEAPIATAELY--DGSTVECRIFSAPHAMAPGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIP 402
            M  +V   R I        VV  + L F I G+   EPAFA++ P      EG +      HGV + L+P D+  L L E +   Y+   A A++   D + +      A +   P R+PSARYM L+++GA ++ + +Q+ + LR +P
Sbjct:   28 MKSTVMNNRGITPISMQAVVVPSYVLCFDIFGIPYAEPAFASIAPLRDEQIEGGVKSLPPVHGVAYLLTPDDYRRLVLTEGAGVGYDEITAYAKVIAPDQADILIHTLKAKYPWRPNRAPSARYMGLIIDGAQEFNLPQQYQSFLRSLP 176          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: D5BZG8_NITHN (AIG2 family protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) TaxID=472759 RepID=D5BZG8_NITHN)

HSP 1 Score: 61.2 bits (147), Expect = 5.420e-9
Identity = 38/135 (28.15%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 MNDSVWKRRKIEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGALTHGVLHKLSPQDFYSLWLFE-RSYEAPIATAELYDGSTVECRIFSAPHAMAPGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIP 402
            + D + +RR I    S  A +  ++L F+  GL  +EP FA+++P      +GVLH L+      +  FE R Y+  +   E      +    + +   +  GR PS RY +L++ GA ++ + ++++A+L++IP
Sbjct:   13 LTDVLVRRRGIIPLSSEQARLDGYQLVFNQPGLPYIEPCFASIQPTRTDCVYGVLHHLTAHTATQIDRFEGRGYQRLMIKVEGAKSGWISAWAYQSSRPIE-GRRPSRRYRDLLIAGAQEFNLPQEYIAYLKQIP 146          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A520QV62_9DELT (Uncharacterized protein n=1 Tax=Sandaracinaceae bacterium TaxID=2510337 RepID=A0A520QV62_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 6.410e-9
Identity = 37/128 (28.91%), Postives = 63/128 (49.22%), Query Frame = 1
Query:   31 IEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGALTHGVLHKLSPQDFYSLWLFER---SYEAPIATAELYDGSTVECRIF-SAPHAMAPGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIP 402
            +E   + PA++RD+ L+F++   + +E    N+ P EG   HGVL+    +    L   E    +Y       E YDG      ++   P  + P   PS RY N++++GA   G+ + ++A LR +P
Sbjct:   11 VESDRAEPAILRDWRLAFTVPNFFAIEGCTGNIVPDEGRAVHGVLYACDDRYLPVLDELEAVDVAYARRELEVETYDGERRVAYVYVGLPARVVPEGHPSLRYRNILVQGARDAGLRDDYVAWLRDLP 138          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A2D7NPX8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D7NPX8_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 7.190e-9
Identity = 37/128 (28.91%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   22 RRKIEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGALTHGVLHKLSPQDFYSLWLFE---RSYEAPIATAELYDGSTVECRIFSA--PHAMAPGRSPSARYMNLVLEGAVQYGVDEQWLAHL 390
            R  ++  E  P  ++D+ L+F++ G+  +EP+ A ++P  G   HGVL ++SP++F  L L E    +Y       E Y G+  +   F A     M   + P+ RY+ L+  GA   G+   +++ L
Sbjct:   35 RANLKVKECFPGKLKDWRLAFNLRGISWLEPSMAGVEPAPGDEVHGVLLRMSPEEFRKLVLSEGENHAYRQVEVEVEXYXGTKQKALAFXALXSRKMPEDKPPTLRYLELIRTGARLRGLAPDYISRL 162          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A7S0LMQ6_9EUKA (Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LMQ6_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.870e-8
Identity = 38/126 (30.16%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   52 PAVVRDFELSFSIVGLWPVEPAFANMKPKEGALTHGVLHKLSPQDFYSLWLFERS------YEAPIATAELYDGSTVECRIF--SAPHAMAPGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIPT 405
            PA V D  L+F++    P+EP+ A+++P  G +  G ++ L+ + + +LW  E        YE  +  A L    TVE      +A   +     PS RY  L+++GA + G+ +Q+ A L  +PT
Sbjct:   57 PASVLDHRLAFNMRMFPPLEPSMASIEPCSGDVCEGCVYTLTREGYEALWKSEGGAMDRPGYEEVVVKASLRGSETVEAITLRSAAWMRLKVDAPPSVRYKGLIIDGAREVGLTQQYQARLAALPT 182          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A0C1E1F0_ASPUT (Membrane dipeptidase n=1 Tax=Aspergillus ustus TaxID=40382 RepID=A0A0C1E1F0_ASPUT)

HSP 1 Score: 61.6 bits (148), Expect = 2.220e-8
Identity = 48/159 (30.19%), Postives = 72/159 (45.28%), Query Frame = 1
Query:   10 SVWKRRKIEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGALT------------HGVLHKLSPQDFYSLWLFERSYEAPIATAELYDGSTVECRIFS----------------APHAMAPGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIP 402
            SV + R I   ++ P VV    L F I G+   EPAFA++ P     T            HGV + L+  D+  L L E +          YD  TV  RI S                A +   P R+PSARYMNL+++GA ++ + + + ++L+ +P
Sbjct:   23 SVMRGRGIVPLDAQPVVVLSHRLCFDIFGIPYAEPAFASIVPFMLDATIDSPSGQAIPPVHGVAYLLTRDDYRRLVLSEGAGVG-------YDEITVRARIMSLEETGQDCEILAHTLQAKYPWRPNRAPSARYMNLIIDGANEFNLPDSYKSYLQSLP 174          
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Match: A0A356T7G9_9DELT (FAD-binding FR-type domain-containing protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A356T7G9_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 2.900e-8
Identity = 36/128 (28.12%), Postives = 62/128 (48.44%), Query Frame = 1
Query:   31 IEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGALTHGVLHKLSPQDFYSLWLFER---SYEAPIATAELYDGSTVECRIF-SAPHAMAPGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIP 402
            +E   + PA++RD+ L+F++   + +E    N+ P EG   HGVL+    +    L   E    +Y       E YDG      ++   P  + P   PS RY N++++GA   G+ + ++  LR +P
Sbjct:   21 VESDRAEPAILRDWRLAFTVPNFFAIEGCTGNIVPDEGRAVHGVLYACDDRYLPVLDELEAVDVAYARRELEVETYDGERRVAYVYVGLPARVVPEGHPSLRYRNILVQGARDAGLRDDYVEWLRDLP 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88696.20596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A814V2A4_9BILA1.620e-1231.43Gamma-glutamylcyclotransferase n=1 Tax=Didymodacty... [more]
A0A3D5JAH4_9DELT1.050e-1132.58GGACT domain-containing protein n=2 Tax=Deltaprote... [more]
A0A2D4RQZ6_9DELT2.030e-1131.39Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1F5L5M1_9EURO1.040e-1031.54Dipeptidase n=1 Tax=Penicillium arizonense TaxID=1... [more]
D5BZG8_NITHN5.420e-928.15AIG2 family protein n=1 Tax=Nitrosococcus halophil... [more]
A0A520QV62_9DELT6.410e-928.91Uncharacterized protein n=1 Tax=Sandaracinaceae ba... [more]
A0A2D7NPX8_9DELT7.190e-928.91Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7S0LMQ6_9EUKA1.870e-830.16Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=... [more]
A0A0C1E1F0_ASPUT2.220e-830.19Membrane dipeptidase n=1 Tax=Aspergillus ustus Tax... [more]
A0A356T7G9_9DELT2.900e-828.13FAD-binding FR-type domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88696contigM-pyrifera_M_contig88696:5..409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.0
Seed ortholog evalue7.1e-15
Seed eggNOG ortholog242159.ABO97230
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gamma-glutamylcyclotransferase activity
EggNOG OGs2C7FE@1,2S70Y@2759,34IX9@3041,37XZK@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size405
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.3424733-CDS-M-pyrifera_M_contig88696:4..4091622816797.3424733-CDS-M-pyrifera_M_contig88696:4..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88696 5..409 +
1692278184.299028-CDS-M-pyrifera_M_contig88696:4..4091692278184.299028-CDS-M-pyrifera_M_contig88696:4..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88696 5..409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88696.20596.1prot_M-pyrifera_M_contig88696.20596.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88696 5..409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88696.20596.1

>prot_M-pyrifera_M_contig88696.20596.1 ID=prot_M-pyrifera_M_contig88696.20596.1|Name=mRNA_M-pyrifera_M_contig88696.20596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MNDSVWKRRKIEKSESMPAVVRDFELSFSIVGLWPVEPAFANMKPKEGAL
THGVLHKLSPQDFYSLWLFERSYEAPIATAELYDGSTVECRIFSAPHAMA
PGRSPSARYMNLVLEGAVQYGVDEQWLAHLRRIPT
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mRNA from alignment at M-pyrifera_M_contig88696:5..409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88696.20596.1 ID=mRNA_M-pyrifera_M_contig88696.20596.1|Name=mRNA_M-pyrifera_M_contig88696.20596.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig88696:5..409+ (Macrocystis pyrifera P11B4 male)
ATGAATGACAGTGTGTGGAAGAGGCGCAAGATTGAGAAGAGTGAGTCTAT GCCTGCGGTAGTCCGCGATTTTGAGCTCTCCTTCTCCATTGTGGGCCTCT GGCCGGTCGAACCGGCGTTTGCCAACATGAAGCCGAAAGAGGGAGCCCTG ACACACGGTGTGCTTCACAAGCTGAGTCCTCAAGACTTCTATAGTCTCTG GCTCTTCGAGAGAAGCTATGAGGCGCCCATTGCCACCGCTGAGCTCTACG ACGGATCGACGGTGGAGTGCAGGATCTTCTCGGCACCACACGCCATGGCA CCTGGAAGAAGCCCTTCTGCCCGCTACATGAACCTTGTGCTCGAGGGCGC TGTCCAGTACGGTGTGGACGAGCAATGGCTGGCGCACCTGCGAAGAATTC CCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88696:5..409+

>mRNA_M-pyrifera_M_contig88696.20596.1 ID=mRNA_M-pyrifera_M_contig88696.20596.1|Name=mRNA_M-pyrifera_M_contig88696.20596.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig88696:5..409+ (Macrocystis pyrifera P11B4 male)
ATGAATGACAGTGTGTGGAAGAGGCGCAAGATTGAGAAGAGTGAGTCTAT
GCCTGCGGTAGTCCGCGATTTTGAGCTCTCCTTCTCCATTGTGGGCCTCT
GGCCGGTCGAACCGGCGTTTGCCAACATGAAGCCGAAAGAGGGAGCCCTG
ACACACGGTGTGCTTCACAAGCTGAGTCCTCAAGACTTCTATAGTCTCTG
GCTCTTCGAGAGAAGCTATGAGGCGCCCATTGCCACCGCTGAGCTCTACG
ACGGATCGACGGTGGAGTGCAGGATCTTCTCGGCACCACACGCCATGGCA
CCTGGAAGAAGCCCTTCTGCCCGCTACATGAACCTTGTGCTCGAGGGCGC
TGTCCAGTACGGTGTGGACGAGCAATGGCTGGCGCACCTGCGAAGAATTC
CCACTATGAATGACAGTGTGTGGAAGAGGCGCAAGATTGAGAAGAGTGAG
TCTATGCCTGCGGTAGTCCGCGATTTTGAGCTCTCCTTCTCCATTGTGGG
CCTCTGGCCGGTCGAACCGGCGTTTGCCAACATGAAGCCGAAAGAGGGAG
CCCTGACACACGGTGTGCTTCACAAGCTGAGTCCTCAAGACTTCTATAGT
CTCTGGCTCTTCGAGAGAAGCTATGAGGCGCCCATTGCCACCGCTGAGCT
CTACGACGGATCGACGGTGGAGTGCAGGATCTTCTCGGCACCACACGCCA
TGGCACCTGGAAGAAGCCCTTCTGCCCGCTACATGAACCTTGTGCTCGAG
GGCGCTGTCCAGTACGGTGTGGACGAGCAATGGCTGGCGCACCTGCGAAG
AATTCCCACT
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