mRNA_M-pyrifera_M_contig88624.20576.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88624.20576.1
Unique NamemRNA_M-pyrifera_M_contig88624.20576.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A2E5X712_9BACT (Flagellar biosynthesis protein FlhA n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X712_9BACT)

HSP 1 Score: 290 bits (741), Expect = 9.420e-91
Identity = 148/212 (69.81%), Postives = 177/212 (83.49%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVG-AKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQ 633
            TSVLVTH +E+L+NA+GE+LTRDDVK LIEN+R++SPAVVEE++PE++ +GEVQQVL NLL EGV +RN+  I+E LADNA  T+DP+TL+ELVRQRLGRALCE H DR G +HAVTLDP +E +LASAVG A  + +  PV   WL++LME V D+V  A  GGKDVVLLVRSNVRRFL ELVQ S+PKVAVLSYNEVVPAKSVET AIV+
Sbjct:  492 TSVLVTHLSEILRNAMGEVLTRDDVKELIENVRKSSPAVVEELLPEKMGFGEVQQVLKNLLAEGVSIRNMPAILEVLADNAQLTKDPQTLTELVRQRLGRALCENHADRNGTLHAVTLDPEVEYKLASAVGTATGEADCPPVDAVWLKDLMERVGDSVAQAARGGKDVVLLVRSNVRRFLNELVQASLPKVAVLSYNEVVPAKSVETVAIVR 703          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A7C2ANW0_9BACT (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2ANW0_9BACT)

HSP 1 Score: 281 bits (720), Expect = 1.270e-87
Identity = 141/210 (67.14%), Postives = 173/210 (82.38%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIV 630
            TSVLVTH  E L+ AL EILTRDDVK L+E  R  +PAVVEE++ E++SYGE+QQVL NLLR+ VPVRN+  I+E LADN  +TRDPETLSELVRQRLGR LCE   D+EGV+HAVTL+P++E+RLA+AVGA  DP AQPVSPA+LQ L+E + +++ +A+  GKD VLL RSNVRRFL ELV+ S+PKVAVLSYNEVVPA++VET  +V
Sbjct:  492 TSVLVTHLTETLRGALPEILTRDDVKELVEATREIAPAVVEELVGEKMSYGEIQQVLANLLRDNVPVRNMPAILETLADNIAKTRDPETLSELVRQRLGRVLCEMVSDKEGVVHAVTLEPSVESRLAAAVGAAQDPEAQPVSPAYLQQLVERIGESLAAASRSGKDAVLLARSNVRRFLSELVRASLPKVAVLSYNEVVPARAVETTGVV 701          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A7Y5PYP9_9PLAN (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PYP9_9PLAN)

HSP 1 Score: 275 bits (703), Expect = 3.370e-85
Identity = 136/210 (64.76%), Postives = 174/210 (82.86%), Query Frame = 1
Query:    4 SVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQ 633
            SVLVTH +EVL+++LG+ILTRDDVK L+EN ++ SPAVVEE++P ++ YGEVQ VL NLLREGV +RN+ +I+E +AD+  RT+DP+TL+ELVRQRLGRALCE H DR G +HAVTLDP IE RLA+AVG  +DP +  V+PA+LQ L+E + ++V +AT GG DVVLL RSNVRRFL ELV+ S+PKV+VLSY EVVPAKSV+T  +V+
Sbjct:  486 SVLVTHLSEVLRSSLGDILTRDDVKELVENAKKVSPAVVEELVPAKIGYGEVQAVLRNLLREGVSIRNVPLILEVIADHVVRTKDPDTLAELVRQRLGRALCESHADRNGTVHAVTLDPGIEQRLANAVGGSADPESPGVNPAYLQRLVERIGESVAAATRGGADVVLLARSNVRRFLGELVRASLPKVSVLSYQEVVPAKSVQTIGVVR 695          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A7Y4WI05_9BACT (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4WI05_9BACT)

HSP 1 Score: 271 bits (694), Expect = 1.110e-83
Identity = 136/211 (64.45%), Postives = 171/211 (81.04%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQ 633
            TSVL+TH +EV++ +L EIL+RDDVK LIE++++TSPAVVEE+IP +L YGEVQQVL NLL +GVPVRN+  I+EALAD   RT+DPE LSE VR RLGR LCE + D+ G +HAVTL+P IEARLA+AVG   DP A PV+PA+LQ L+E +A +V +A+  GKD V+L R  VRRFL ELV+ S+PKVAVLSYNEVVPA++VET A+V+
Sbjct:  506 TSVLITHLSEVIRGSLHEILSRDDVKELIEHVKKTSPAVVEELIPGKLGYGEVQQVLRNLLADGVPVRNMPAILEALADGVARTKDPEALSEFVRGRLGRVLCELYADKSGTVHAVTLEPGIEARLAAAVGVAKDPEAAPVTPAYLQKLVERIAQSVAAASKSGKDAVVLARVGVRRFLNELVRASLPKVAVLSYNEVVPARAVETTAVVR 716          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A7C7YV67_9BACT (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7YV67_9BACT)

HSP 1 Score: 269 bits (688), Expect = 6.280e-83
Identity = 133/214 (62.15%), Postives = 174/214 (81.31%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQVVE 642
            TSVLVTH +E ++  + ++LTRDDVK L+E+++RTSP VVEE+IPER+ YGEVQ VL NLLRE VP+RN+  I+E LADN  RT+DPE L+ELVRQRLGR+LCEQH   +G +HAVTLDP +EAR+A+AVG  +  +   +SPA+LQ LME + + +  AT GG DVVLLVRS+VRRFL ELV++S+PKV+VLSYNEVVPA++VET A++++ E
Sbjct:  491 TSVLVTHLSETIRRDVADVLTRDDVKELVESVKRTSPTVVEELIPERMGYGEVQCVLRNLLRESVPIRNMPAILEVLADNVRRTQDPEALTELVRQRLGRSLCEQHTGPDGTLHAVTLDPEVEARIANAVGTGNQIDVGAISPAYLQRLMERMGEAIAQATRGGNDVVLLVRSSVRRFLNELVRSSLPKVSVLSYNEVVPARAVETAAVIKMEE 704          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A521KRS8_9BACT (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KRS8_9BACT)

HSP 1 Score: 266 bits (681), Expect = 7.800e-82
Identity = 135/211 (63.98%), Postives = 171/211 (81.04%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQ 633
            TSVLVTH +E+L+ +LGEILTRDDVK L+EN++R SPAVV+E++PER+SYG+VQ+VL NLLREGVP+RN+A+I+E LAD+A +T+DPE L+E VR RLGR LCE   D+ G +  VTLDPAIEARLA AVG   D     V+PA+LQ LME +AD+V     GG +V +LVRSNVRRF+ E+V+ S+PKVAVLSYNEVVPA++VET  IV+
Sbjct:  498 TSVLVTHLSEMLRGSLGEILTRDDVKELVENVKRVSPAVVQELLPERMSYGDVQKVLRNLLREGVPIRNMALILETLADHAAKTKDPEALTEHVRTRLGRVLCELVADKGGTVRVVTLDPAIEARLAGAVGLGGDAEPGGVNPAYLQALMERIADSVAKGARGGANVAVLVRSNVRRFVNEMVRQSLPKVAVLSYNEVVPARAVETAGIVR 708          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A523PCS8_9BACT (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PCS8_9BACT)

HSP 1 Score: 263 bits (672), Expect = 1.380e-80
Identity = 129/211 (61.14%), Postives = 174/211 (82.46%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQ 633
            TSVLVTH +E+L+ ++GE++TRDDVK L+E+ +  SPAVVEE++PE++SYGE+Q+VL NLL E V +RN+ V++E LADN  +TRD E L+ELVRQRLGRA+CE++ D++G + AVTLDPA+E+RLASA+G  +D +   V PA+LQ LME +  T+  AT  G++VV+LVRSNVRRFL ELV+ S+PKVAVLSYNEVVPA++VET A+V+
Sbjct:  489 TSVLVTHVSELLRRSMGELITRDDVKDLVESAKAVSPAVVEELVPEKMSYGEIQKVLRNLLAEDVSIRNMPVVLEVLADNIQQTRDAEALTELVRQRLGRAICEKYGDKDGTLFAVTLDPAVESRLASALGVANDVDVGQVGPAYLQGLMERIGKTIAQATQSGREVVVLVRSNVRRFLNELVRASLPKVAVLSYNEVVPARAVETVAVVK 699          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A518ELT6_9BACT (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ELT6_9BACT)

HSP 1 Score: 262 bits (669), Expect = 3.830e-80
Identity = 132/214 (61.68%), Postives = 173/214 (80.84%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQVVE 642
            TSVLVTH +EVL+ AL E++TRDDVK LI N +  +PAVVEE+IP+RL  GE+QQVL NLL EGV +RN+  I+E L+DNA RTRD ETL+EL RQRLGRALCEQ+ D  G IHA+TLDP+IEA+LA+AVG  +DP+A  + PA+L  L+E +  ++G A+  GK+VV+LVRS +RRFL ELV++S+PK AVLS+NEVVPA+SV+T ++V++ E
Sbjct:  484 TSVLVTHLSEVLRGALPELITRDDVKDLIANAKAIAPAVVEELIPDRLGIGEIQQVLRNLLAEGVAIRNMPAILETLSDNAPRTRDVETLTELTRQRLGRALCEQYADSNGTIHAITLDPSIEAQLAAAVGRSNDPDASTIGPAYLTRLVEEIGQSLGLASQSGKNVVVLVRSGIRRFLAELVRSSLPKTAVLSFNEVVPARSVDTVSVVRMKE 697          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A518BSQ7_9BACT (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BSQ7_9BACT)

HSP 1 Score: 258 bits (660), Expect = 1.170e-78
Identity = 130/215 (60.47%), Postives = 173/215 (80.47%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVG----AKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQ 633
            TSVLVTH +EVL+  LG+IL+RDDVK L+EN++R +PAVVEEV+P+R+ YG +QQVL NLLREG P+RN+  I+EALAD + RT+D + L+E VRQRLGR+LCEQH D +G++HAVTLDP +EAR+A AVG    A+++  + P+ PAWL+ L+E V  ++  A+ GG++VVLLVRSNVRRF+ ELV+ S+PKVAVLSY EV  A S+ET+ IV+
Sbjct:  501 TSVLVTHLSEVLRAHLGDILSRDDVKDLVENVKRVAPAVVEEVVPDRVGYGLLQQVLRNLLREGAPIRNMPAILEALADQSERTKDVDALTEGVRQRLGRSLCEQHADADGILHAVTLDPDVEARIAHAVGSGGPAENEAQSAPIGPAWLRELVERVEGSMSEASRGGREVVLLVRSNVRRFVSELVRASLPKVAVLSYGEVTAAGSIETQKIVR 715          
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Match: A0A518D4R0_9BACT (Flagellar biosynthesis protein FlhA n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D4R0_9BACT)

HSP 1 Score: 245 bits (626), Expect = 1.250e-73
Identity = 122/211 (57.82%), Postives = 170/211 (80.57%), Query Frame = 1
Query:    1 TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSYGEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGRALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLMEHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVPAKSVETEAIVQ 633
            TSVLVTH +E ++    E+LTRDDVK L+EN++  +PAVV+E+IP+RL YGEVQ VL NLLRE VP+RN+ +I+EAL+D A RT+D E L+ELVRQRL R LCE +   +GV++AVTL+P +E+R+A++V  KS  +++PV PA+LQ L+E + +T+ +A  GG++VVLLVRSNVRR + ELV+ S+PKVAV+SYNE++PA+S+ET  IV+
Sbjct:  508 TSVLVTHLSETIKRNFDELLTRDDVKELVENVKLDAPAVVDELIPDRLGYGEVQNVLRNLLREEVPIRNMPLILEALSDAATRTKDVEQLTELVRQRLARTLCELYAGDKGVVYAVTLEPHLESRIAASVDPKSASDSKPVDPAYLQRLVERIEETLSTANQGGREVVLLVRSNVRRLIGELVRASLPKVAVVSYNEMIPARSIETVDIVR 718          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88624.20576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E5X712_9BACT9.420e-9169.81Flagellar biosynthesis protein FlhA n=2 Tax=Planct... [more]
A0A7C2ANW0_9BACT1.270e-8767.14Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]
A0A7Y5PYP9_9PLAN3.370e-8564.76Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]
A0A7Y4WI05_9BACT1.110e-8364.45Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]
A0A7C7YV67_9BACT6.280e-8362.15Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]
A0A521KRS8_9BACT7.800e-8263.98Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]
A0A523PCS8_9BACT1.380e-8061.14Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]
A0A518ELT6_9BACT3.830e-8061.68Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]
A0A518BSQ7_9BACT1.170e-7860.47Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]
A0A518D4R0_9BACT1.250e-7357.82Flagellar biosynthesis protein FlhA n=1 Tax=Planct... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88624contigM-pyrifera_M_contig88624:2..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score165.6
Seed ortholog evalue2.5e-38
Seed eggNOG ortholog469383.Cwoe_0070
Preferred nameflhA
KEGG koko:K02400
KEGG TC3.A.6.2,3.A.6.3
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0006996,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0044085,GO:0044464,GO:0044780,GO:0044781,GO:0070925,GO:0071840,GO:0071944
EggNOG free text desc.FHIPEP family
EggNOG OGs2IB5S@201174,4CR5U@84995,COG1298@1,COG1298@2
COG Functional cat.NU
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035,ko02044
Exons1
Model size648
Cds size648
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.4894855-CDS-M-pyrifera_M_contig88624:1..6491622816796.4894855-CDS-M-pyrifera_M_contig88624:1..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88624 2..649 +
1692278183.7809196-CDS-M-pyrifera_M_contig88624:1..6491692278183.7809196-CDS-M-pyrifera_M_contig88624:1..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88624 2..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88624.20576.1prot_M-pyrifera_M_contig88624.20576.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88624 2..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88624.20576.1

>prot_M-pyrifera_M_contig88624.20576.1 ID=prot_M-pyrifera_M_contig88624.20576.1|Name=mRNA_M-pyrifera_M_contig88624.20576.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=216bp
TSVLVTHFAEVLQNALGEILTRDDVKALIENLRRTSPAVVEEVIPERLSY
GEVQQVLGNLLREGVPVRNLAVIMEALADNAGRTRDPETLSELVRQRLGR
ALCEQHCDREGVIHAVTLDPAIEARLASAVGAKSDPNAQPVSPAWLQNLM
EHVADTVGSATSGGKDVVLLVRSNVRRFLRELVQTSMPKVAVLSYNEVVP
AKSVETEAIVQVVEQ*
back to top

mRNA from alignment at M-pyrifera_M_contig88624:2..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88624.20576.1 ID=mRNA_M-pyrifera_M_contig88624.20576.1|Name=mRNA_M-pyrifera_M_contig88624.20576.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig88624:2..649+ (Macrocystis pyrifera P11B4 male)
ACCAGCGTGTTGGTGACGCACTTCGCCGAGGTGTTGCAGAACGCGCTCGG CGAGATCCTGACCCGCGACGACGTCAAGGCGCTGATCGAGAACCTGCGGC GCACGTCGCCCGCGGTCGTCGAAGAGGTGATCCCCGAGCGGCTCTCGTAC GGCGAGGTCCAACAGGTGCTGGGCAACCTGCTGCGCGAAGGCGTGCCGGT GCGCAACCTCGCGGTGATCATGGAGGCGCTGGCCGACAACGCCGGCCGCA CCCGCGACCCCGAGACGCTCTCCGAGCTGGTGCGCCAACGCCTGGGCCGC GCGCTGTGCGAGCAGCACTGCGACCGCGAGGGCGTGATCCACGCGGTCAC GCTCGATCCCGCGATCGAGGCGCGGCTCGCCTCGGCGGTCGGCGCCAAGT CCGATCCGAACGCCCAACCCGTCAGCCCCGCATGGCTCCAGAACCTGATG GAGCACGTCGCCGACACCGTCGGCAGTGCGACGTCGGGGGGCAAGGACGT CGTGCTCCTGGTGCGCTCGAACGTGCGCCGCTTCCTCCGTGAGCTCGTGC AGACCTCGATGCCCAAGGTCGCGGTGCTCTCCTACAACGAAGTCGTCCCG GCGAAGTCCGTCGAGACCGAAGCCATCGTGCAAGTGGTCGAACAATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88624:2..649+

>mRNA_M-pyrifera_M_contig88624.20576.1 ID=mRNA_M-pyrifera_M_contig88624.20576.1|Name=mRNA_M-pyrifera_M_contig88624.20576.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1296bp|location=Sequence derived from alignment at M-pyrifera_M_contig88624:2..649+ (Macrocystis pyrifera P11B4 male)
ACCAGCGTGTTGGTGACGCACTTCGCCGAGGTGTTGCAGAACGCGCTCGG
CGAGATCCTGACCCGCGACGACGTCAAGGCGCTGATCGAGAACCTGCGGC
GCACGTCGCCCGCGGTCGTCGAAGAGGTGATCCCCGAGCGGCTCTCGTAC
GGCGAGGTCCAACAGGTGCTGGGCAACCTGCTGCGCGAAGGCGTGCCGGT
GCGCAACCTCGCGGTGATCATGGAGGCGCTGGCCGACAACGCCGGCCGCA
CCCGCGACCCCGAGACGCTCTCCGAGCTGGTGCGCCAACGCCTGGGCCGC
GCGCTGTGCGAGCAGCACTGCGACCGCGAGGGCGTGATCCACGCGGTCAC
GCTCGATCCCGCGATCGAGGCGCGGCTCGCCTCGGCGGTCGGCGCCAAGT
CCGATCCGAACGCCCAACCCGTCAGCCCCGCATGGCTCCAGAACCTGATG
GAGCACGTCGCCGACACCGTCGGCAGTGCGACGTCGGGGGGCAAGGACGT
CGTGCTCCTGGTGCGCTCGAACGTGCGCCGCTTCCTCCGTGAGCTCGTGC
AGACCTCGATGCCCAAGGTCGCGGTGCTCTCCTACAACGAAGTCGTCCCG
GCGAAGTCCGTCGAGACCGAAGCCATCGTGCAAGTGGTCGAACAATGAAC
CAGCGTGTTGGTGACGCACTTCGCCGAGGTGTTGCAGAACGCGCTCGGCG
AGATCCTGACCCGCGACGACGTCAAGGCGCTGATCGAGAACCTGCGGCGC
ACGTCGCCCGCGGTCGTCGAAGAGGTGATCCCCGAGCGGCTCTCGTACGG
CGAGGTCCAACAGGTGCTGGGCAACCTGCTGCGCGAAGGCGTGCCGGTGC
GCAACCTCGCGGTGATCATGGAGGCGCTGGCCGACAACGCCGGCCGCACC
CGCGACCCCGAGACGCTCTCCGAGCTGGTGCGCCAACGCCTGGGCCGCGC
GCTGTGCGAGCAGCACTGCGACCGCGAGGGCGTGATCCACGCGGTCACGC
TCGATCCCGCGATCGAGGCGCGGCTCGCCTCGGCGGTCGGCGCCAAGTCC
GATCCGAACGCCCAACCCGTCAGCCCCGCATGGCTCCAGAACCTGATGGA
GCACGTCGCCGACACCGTCGGCAGTGCGACGTCGGGGGGCAAGGACGTCG
TGCTCCTGGTGCGCTCGAACGTGCGCCGCTTCCTCCGTGAGCTCGTGCAG
ACCTCGATGCCCAAGGTCGCGGTGCTCTCCTACAACGAAGTCGTCCCGGC
GAAGTCCGTCGAGACCGAAGCCATCGTGCAAGTGGTCGAACAATGA
back to top