mRNA_M-pyrifera_M_contig88614.20573.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88614.20573.1
Unique NamemRNA_M-pyrifera_M_contig88614.20573.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: UPI0009E4D424 (BTB/POZ domain-containing protein KCTD6-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4D424)

HSP 1 Score: 85.9 bits (211), Expect = 9.090e-19
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   58 RALRLSSGLETAFMERVKLQQDSMVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            RA +    L+ A  +   +    MV+L+VGGH++ TS+ATL +  GSML AMFS R+  +  E G   ID DG  F+Y+L+YLRTGQL+VPE
Sbjct:   40 RARKEMEALDEAAKKLEHVHFSEMVKLNVGGHLFSTSLATLNKDPGSMLPAMFSGRFDTKPGEDGSYFIDRDGTHFRYILNYLRTGQLIVPE 131
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BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: UPI000C055D35 (BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C055D35)

HSP 1 Score: 86.7 bits (213), Expect = 1.430e-18
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  124 SMVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            +MV+L+VGGH + TSVATL R  GSML AMFS R+  +  E G   ID DG  F+Y+L+YLR+GQLVVPE
Sbjct:   65 TMVQLNVGGHQFSTSVATLNRDPGSMLHAMFSGRFDTKPSEDGSYFIDRDGTHFRYILNYLRSGQLVVPE 134
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BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: UPI000F5568E6 (uncharacterized protein LOC113668913 isoform X2 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5568E6)

HSP 1 Score: 86.3 bits (212), Expect = 8.980e-18
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:  124 SMVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            +MV+L+VGGH++ TSVATL R  GSML AMFS R+  +  E G   ID DG  F+Y+L+YLR+GQLV+PE
Sbjct:   64 TMVQLNVGGHLFSTSVATLSRDPGSMLHAMFSGRFDTKPSEDGSYFIDRDGTHFRYILNYLRSGQLVLPE 133
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BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: UPI0009E36DA2 (BTB/POZ domain-containing protein KCTD6-like isoform X2 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E36DA2)

HSP 1 Score: 82.8 bits (203), Expect = 1.250e-17
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:  127 MVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            MV+L+VGGH++ TS+ATL +   SML AMFS R+  +  E G   ID DG  F+Y+L+YLRTGQL+VPE
Sbjct:   57 MVKLNVGGHLFSTSLATLTKDPASMLHAMFSGRFDTKPGEDGSYFIDRDGTHFRYILNYLRTGQLIVPE 125
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BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: UPI0009E1BE33 (uncharacterized protein LOC110062217 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1BE33)

HSP 1 Score: 85.5 bits (210), Expect = 1.730e-17
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:  124 SMVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            +M++L+VGGH++ TS+ATL +  GSML AMFS R+  +  E G   ID DG  F+Y+L+YLRTGQLVVPE
Sbjct:   61 TMLKLNVGGHLFSTSLATLNKDPGSMLHAMFSGRFDTKPSEDGSYFIDRDGTHFRYILNYLRTGQLVVPE 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: A0A3M6U4B3_POCDA (Uncharacterized protein n=3 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U4B3_POCDA)

HSP 1 Score: 86.3 bits (212), Expect = 2.210e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:  124 SMVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            +MV+L+VGGH++ TSVATL R  GSML AMFS R+  +  E G   ID DG  F+Y+L+YLR+GQLV+PE
Sbjct:   71 TMVQLNVGGHLFSTSVATLSRDPGSMLHAMFSGRFDTKPSEDGSYFIDRDGTHFRYILNYLRSGQLVLPE 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: M0QSN0_ACACA (K+ channel tetramerisation subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=M0QSN0_ACACA)

HSP 1 Score: 84.0 bits (206), Expect = 2.460e-17
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:   28 QKIVQLSEELRALRLSSGLETAFMERVKLQQDSMVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQL 321
            Q + Q  ++L AL L +  +  F E ++L+  S V+LDVGG  + TS+ TL     SML AMFS R+ L KD+ GRV ID DGELF YVL YLR G+L
Sbjct:   41 QSVEQRGKDLAALELQAHHK--FAEELRLRAGSRVKLDVGGVHFTTSLTTLMTEPDSMLAAMFSGRHELEKDDDGRVFIDRDGELFNYVLQYLREGEL 136
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BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: A0A2B4RKQ4_STYPI (BTB/POZ domain-containing protein KCTD6 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RKQ4_STYPI)

HSP 1 Score: 85.9 bits (211), Expect = 2.890e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  124 SMVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            +MV+L+VGGH + TSVATL R  GSML AMFS R+  +  E G   ID DG  F+Y+L+YLRTG+LVVP+
Sbjct:  342 TMVQLNVGGHQFSTSVATLNRDPGSMLHAMFSGRFDTKPSEDGSYFIDRDGTHFRYILNYLRTGELVVPD 411
[Close]
BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: UPI0009E57AB8 (BTB/POZ domain-containing protein KCTD4-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E57AB8)

HSP 1 Score: 83.6 bits (205), Expect = 3.040e-17
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  124 SMVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            SM++L+VGGH++ TS++TL +  GSML AMFS R+     E G   ID DG  F+Y+L+YLRTGQL+VPE
Sbjct:   61 SMLKLNVGGHLFSTSLSTLNKDPGSMLHAMFSGRFDTNASEDGSYFIDRDGTHFRYILNYLRTGQLLVPE 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Match: A0A6P4Y2R0_BRABE (BTB/POZ domain-containing protein KCTD19-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y2R0_BRABE)

HSP 1 Score: 84.3 bits (207), Expect = 9.750e-17
Identity = 47/108 (43.52%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   25 EQKIVQLSEELRALRLSSGLETA----FMERVKLQQDS-MVELDVGGHVYKTSVATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQLVVPE 333
            E +  ++ E + ALR+  G +      + + V++   S +V LDVGGHVY+T++ TL R+  SML AMF   +   +D+ GR  ID DG LF++VL++LRTGQLV+PE
Sbjct:  238 EAEFYEIEELIEALRIMMGKDRPEDYYYDDDVEMSTSSDVVTLDVGGHVYRTTMTTLTRYPDSMLGAMFGGDFDALRDDQGRYFIDRDGTLFRHVLNFLRTGQLVLPE 345
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88614.20573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009E4D4249.090e-1947.83BTB/POZ domain-containing protein KCTD6-like n=1 T... [more]
UPI000C055D351.430e-1860.00BTB/POZ domain-containing adapter for CUL3-mediate... [more]
UPI000F5568E68.980e-1858.57uncharacterized protein LOC113668913 isoform X2 n=... [more]
UPI0009E36DA21.250e-1756.52BTB/POZ domain-containing protein KCTD6-like isofo... [more]
UPI0009E1BE331.730e-1757.14uncharacterized protein LOC110062217 isoform X1 n=... [more]
A0A3M6U4B3_POCDA2.210e-1758.57Uncharacterized protein n=3 Tax=Pocillopora damico... [more]
M0QSN0_ACACA2.460e-1750.00K+ channel tetramerisation subfamily protein n=1 T... [more]
A0A2B4RKQ4_STYPI2.890e-1758.57BTB/POZ domain-containing protein KCTD6 n=1 Tax=St... [more]
UPI0009E57AB83.040e-1755.71BTB/POZ domain-containing protein KCTD4-like n=1 T... [more]
A0A6P4Y2R0_BRABE9.750e-1743.52BTB/POZ domain-containing protein KCTD19-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88614contigM-pyrifera_M_contig88614:405..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score85.5
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog10224.XP_002735696.1
Preferred nameKCTD6
KEGG koko:K21916
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0008589,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0019538,GO:0019941,GO:0023051,GO:0023057,GO:0030163,GO:0030506,GO:0033143,GO:0033146,GO:0036211,GO:0042802,GO:0043170,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045879,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051603,GO:0065007,GO:0071704,GO:0097602,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.BTB POZ domain-containing protein
EggNOG OGs399AZ@33154,3BGA7@33208,3CTMN@33213,KOG2723@1,KOG2723@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size333
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.3499067-UTR-M-pyrifera_M_contig88614:404..4221622816796.3499067-UTR-M-pyrifera_M_contig88614:404..422Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88614 405..422 +
1692278183.710652-UTR-M-pyrifera_M_contig88614:404..4221692278183.710652-UTR-M-pyrifera_M_contig88614:404..422Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88614 405..422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.361094-CDS-M-pyrifera_M_contig88614:422..7371622816796.361094-CDS-M-pyrifera_M_contig88614:422..737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88614 423..737 +
1692278183.7242975-CDS-M-pyrifera_M_contig88614:422..7371692278183.7242975-CDS-M-pyrifera_M_contig88614:422..737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88614 423..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88614.20573.1prot_M-pyrifera_M_contig88614.20573.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88614 423..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88614.20573.1

>prot_M-pyrifera_M_contig88614.20573.1 ID=prot_M-pyrifera_M_contig88614.20573.1|Name=mRNA_M-pyrifera_M_contig88614.20573.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MQEQKIVQLSEELRALRLSSGLETAFMERVKLQQDSMVELDVGGHVYKTS
VATLRRHQGSMLDAMFSDRYPLRKDEHGRVCIDADGELFKYVLDYLRTGQ
LVVPE
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mRNA from alignment at M-pyrifera_M_contig88614:405..737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88614.20573.1 ID=mRNA_M-pyrifera_M_contig88614.20573.1|Name=mRNA_M-pyrifera_M_contig88614.20573.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig88614:405..737+ (Macrocystis pyrifera P11B4 male)
GAACTGAGGCTCCTGAGGATGCAGGAACAGAAGATTGTACAGCTTTCCGA
GGAGCTGCGCGCGCTCCGATTGAGCAGCGGCCTCGAGACTGCATTCATGG
AGCGCGTGAAGCTGCAGCAGGACAGCATGGTGGAGCTGGACGTGGGCGGC
CATGTGTACAAAACCTCTGTGGCGACCCTGAGGCGCCACCAAGGTAGCAT
GTTGGATGCAATGTTCTCCGATAGATACCCTCTGCGAAAGGATGAACATG
GCCGAGTCTGCATCGATGCTGACGGAGAGCTATTCAAGTATGTGCTGGAC
TACTTGCGCACTGGCCAATTGGTGGTGCCCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88614:405..737+

>mRNA_M-pyrifera_M_contig88614.20573.1 ID=mRNA_M-pyrifera_M_contig88614.20573.1|Name=mRNA_M-pyrifera_M_contig88614.20573.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig88614:405..737+ (Macrocystis pyrifera P11B4 male)
ATGCAGGAACAGAAGATTGTACAGCTTTCCGAGGAGCTGCGCGCGCTCCG
ATTGAGCAGCGGCCTCGAGACTGCATTCATGGAGCGCGTGAAGCTGCAGC
AGGACAGCATGGTGGAGCTGGACGTGGGCGGCCATGTGTACAAAACCTCT
GTGGCGACCCTGAGGCGCCACCAAGGTAGCATGTTGGATGCAATGTTCTC
CGATAGATACCCTCTGCGAAAGGATGAACATGGCCGAGTCTGCATCGATG
CTGACGGAGAGCTATTCAAGTATGTGCTGGACTACTTGCGCACTGGCCAA
TTGGTGGTGCCCGAGATGCAGGAACAGAAGATTGTACAGCTTTCCGAGGA
GCTGCGCGCGCTCCGATTGAGCAGCGGCCTCGAGACTGCATTCATGGAGC
GCGTGAAGCTGCAGCAGGACAGCATGGTGGAGCTGGACGTGGGCGGCCAT
GTGTACAAAACCTCTGTGGCGACCCTGAGGCGCCACCAAGGTAGCATGTT
GGATGCAATGTTCTCCGATAGATACCCTCTGCGAAAGGATGAACATGGCC
GAGTCTGCATCGATGCTGACGGAGAGCTATTCAAGTATGTGCTGGACTAC
TTGCGCACTGGCCAATTGGTGGTGCCCGAG
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