mRNA_M-pyrifera_M_contig88612.20571.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig88612.20571.1
Unique Name	mRNA_M-pyrifera_M_contig88612.20571.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: A0A355SUB8_9GAMM (Uncharacterized protein n=4 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A355SUB8_9GAMM)

HSP 1 Score: 218 bits (555), Expect = 8.820e-67
Identity = 173/204 (84.80%), Postives = 173/204 (84.80%), Query Frame = 1

Query:  205 AQDTAQAGGVTQPTPASATGSDQGXXXXXXXXXXXXXXXXXXXXXXXEPGFEASTGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNGSAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASESAGGAPAGGREGPYGEDITVAGAGGGRGSV 816
            AQDTAQAGG TQPTPASATGSD                         EPGFEASTGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASESAGGAPAGGREGPYGEDITVAGAGGGRGSV
Sbjct:   23 AQDTAQAGGATQPTPASATGSDPSTSGDRGAASASAGNPAGGVQPAGEPGFEASTGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XAGAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASESAGGAPAGGREGPYGEDITVAGAGGGRGSV 224

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: A0A359EJH4_9GAMM (Uncharacterized protein n=2 Tax=Halieaceae TaxID=1706372 RepID=A0A359EJH4_9GAMM)

HSP 1 Score: 192 bits (487), Expect = 2.210e-57
Identity = 151/157 (96.18%), Postives = 151/157 (96.18%), Query Frame = 1

Query:  346 EPGFEASTGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNGSAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASESAGGAPAGGREGPYGEDITVAGAGGGRGSV 816
            EPGFEAS GGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PGN  AGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASE AGGAPAGGREGPYGEDITVAGAGGGRGSV
Sbjct:    6 EPGFEASNGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PGNAGAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASEPAGGAPAGGREGPYGEDITVAGAGGGRGSV 160

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: A0A3C1KLU4_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Haliea salexigens TaxID=287487 RepID=A0A3C1KLU4_9GAMM)

HSP 1 Score: 149 bits (376), Expect = 3.130e-41
Identity = 151/158 (95.57%), Postives = 151/158 (95.57%), Query Frame = 1

Query:  205 AQDTAQAGGVTQPTPASATGSDQGXXXXXXXXXXXXXXXXXXXXXXXEPGFEASTGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNGSAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQAR 678
            AQDTAQAGGVTQ TPASATGSDQGXXXXXXXXXXXXXXXXXXXXXX EPGFEASTGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQAR
Sbjct:   23 AQDTAQAGGVTQTTPASATGSDQGXXXXXXXXXXXXXXXXXXXXXXGEPGFEASTGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQAR 180

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: A0A2E7C8C5_9GAMM (Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C8C5_9GAMM)

HSP 1 Score: 122 bits (305), Expect = 7.510e-29
Identity = 89/164 (54.27%), Postives = 93/164 (56.71%), Query Frame = 1

Query:  346 EPGFEASTGGAALPDMRDNPTLDPGTLAALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNGSAGT--GPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASESAGG-----APAGGREGPYGEDITVAGAGGGRGSV 816
            EPGFE  +GG ALPDMRD PTLDPGTLAALEA                                       G G AGT  GPLTPAEQVAILDARLEAG G+FDTMILEEQARQRS                      AP GGREGPYGE+ITVAGAGGG+GSV
Sbjct:  141 EPGFETGSGGEALPDMRDTPTLDPGTLAALEAAMEAAAAGGDGAGNGSDADSGAAPAGASGQWPGDAA---GAGGAGTSAGPLTPAEQVAILDARLEAGTGEFDTMILEEQARQRSXXXXXXXXXXXXXXXXXXXXXXAP-GGREGPYGEEITVAGAGGGQGSV 300

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: UPI001304CB0A (hypothetical protein n=1 Tax=Haliea alexandrii TaxID=2448162 RepID=UPI001304CB0A)

HSP 1 Score: 111 bits (277), Expect = 5.460e-28
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = -2

Query:   18 VSGVPALLPGEPPAVEGIDALLPLVGELGLLLEDDELEDDALGLLLDDAEGVLGDEDG 191
            +SGVPALLPGEPPAVEGIDALLPLVGELGLLLEDDELEDDALGLLLDDAEGVLGDEDG
Sbjct:    1 MSGVPALLPGEPPAVEGIDALLPLVGELGLLLEDDELEDDALGLLLDDAEGVLGDEDG 58

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: A0A5C8ZM65_9GAMM (Uncharacterized protein n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C8ZM65_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 1.160e-12
Identity = 51/78 (65.38%), Postives = 53/78 (67.95%), Query Frame = 1

Query:  565 GSAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASESA-GGAPAGGR-EGPYGEDITVAG 792
            G  GTGPLTPAEQVAILDARLE G G+FD MILEEQA QR A+R    D PA E A    PAGG    PYG DI  AG
Sbjct:  116 GMGGTGPLTPAEQVAILDARLEEGTGEFDAMILEEQAAQRRAQR----DNPAPEPAQSNEPAGGGGNSPYGSDIADAG 189

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: UPI0013004E9B (hypothetical protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0013004E9B)

HSP 1 Score: 70.5 bits (171), Expect = 1.240e-10
Identity = 43/73 (58.90%), Postives = 48/73 (65.75%), Query Frame = 1

Query:  574 GTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASESAGGAPAGGREGPYGEDITVAG 792
            G+GPLTPAEQVAILDARLE G G+FD MILEEQ  QR A R +    PA     G  +GG   PYG D+  AG
Sbjct:  112 GSGPLTPAEQVAILDARLEQGTGEFDAMILEEQTAQRQAERDNPAPAPAQPEQAGGGSGGNS-PYGGDMADAG 183

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: A0A5P9NG65_9GAMM (Uncharacterized protein n=2 Tax=Halioglobus maricola TaxID=2601894 RepID=A0A5P9NG65_9GAMM)

HSP 1 Score: 68.9 bits (167), Expect = 2.940e-10
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1

Query:  562 NGSAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRASS 705
            +GS G+GPLTPAEQVAILDA+LEAG  DFD MILE+Q +QR+A R+SS
Sbjct:   71 SGSGGSGPLTPAEQVAILDAQLEAGTSDFDAMILEQQNQQRTATRSSS 118

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: A0A6C0U286_9GAMM (Uncharacterized protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U286_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 3.170e-10
Identity = 102/160 (63.75%), Postives = 111/160 (69.38%), Query Frame = 1

Query:  346 EPGF-EASTGGAALPDMRDNPTLDPGTLAAL--------EAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNGSAGTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARRAS--SDDTPASESAGGAPAGGREGPYGEDITVAG 792
            EPGF EA+ G  ALPDMRD P  D G +A +          XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX   G+ G GPLT AEQVAILDARLE+  GDFDTMILEEQ +QR + RA+  S   PA E  G   AGG   PYGE  + AG
Sbjct:  155 EPGFGEAAGGTGALPDMRDTPASD-GAMAGIGETGGAGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXGTRGQGPLTTAEQVAILDARLESSTGDFDTMILEEQTQQRRSSRATTRSPSEPADEGEG--TAGGS--PYGEIASAAG 309

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BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Match: A0A5B0WPK7_9GAMM (Uncharacterized protein n=1 Tax=Pseudohalioglobus sp. NY5 TaxID=2606449 RepID=A0A5B0WPK7_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 3.170e-10
Identity = 36/41 (87.80%), Postives = 36/41 (87.80%), Query Frame = 1

Query:  574 GTGPLTPAEQVAILDARLEAGAGDFDTMILEEQARQRSARR 696
            G GPLTPAEQVAILDARLE G GDFDTMILEEQARQR A R
Sbjct:  236 GRGPLTPAEQVAILDARLEQGTGDFDTMILEEQARQRQATR 276

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig88612.20571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A355SUB8_9GAMM	8.820e-67	84.80	Uncharacterized protein n=4 Tax=Halieaceae bacteri...	[more]
A0A359EJH4_9GAMM	2.210e-57	96.18	Uncharacterized protein n=2 Tax=Halieaceae TaxID=1...	[more]
A0A3C1KLU4_9GAMM	3.130e-41	95.57	Uncharacterized protein (Fragment) n=1 Tax=Haliea ...	[more]
A0A2E7C8C5_9GAMM	7.510e-29	54.27	Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1...	[more]
UPI001304CB0A	5.460e-28	98.28	hypothetical protein n=1 Tax=Haliea alexandrii Tax...	[more]
A0A5C8ZM65_9GAMM	1.160e-12	65.38	Uncharacterized protein n=1 Tax=Parahaliea maris T...	[more]
UPI0013004E9B	1.240e-10	58.90	hypothetical protein n=1 Tax=Parahaliea mediterran...	[more]
A0A5P9NG65_9GAMM	2.940e-10	72.92	Uncharacterized protein n=2 Tax=Halioglobus marico...	[more]
A0A6C0U286_9GAMM	3.170e-10	63.75	Uncharacterized protein n=1 Tax=Kineobactrum salin...	[more]
A0A5B0WPK7_9GAMM	3.170e-10	87.80	Uncharacterized protein n=1 Tax=Pseudohalioglobus ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig88612	contig	M-pyrifera_M_contig88612:2..817 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	229.9
Seed ortholog evalue	1.4e-57
Seed eggNOG ortholog	1121937.AUHJ01000017_gene3012
Hectar predicted targeting category	other localisation
EggNOG OGs	1NEZW@1224,1SCKV@1236,2EDVS@1,337QX@2,46C7E@72275
Best tax level	Alteromonadaceae
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	816
Cds size	816
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816796.2733936-CDS-M-pyrifera_M_contig88612:1..817	1622816796.2733936-CDS-M-pyrifera_M_contig88612:1..817	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig88612 2..817 +
1692278183.6711385-CDS-M-pyrifera_M_contig88612:1..817	1692278183.6711385-CDS-M-pyrifera_M_contig88612:1..817	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig88612 2..817 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig88612.20571.1	prot_M-pyrifera_M_contig88612.20571.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig88612 2..817 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig88612:2..817+
coding sequence from alignment at M-pyrifera_M_contig88612:2..817+

protein sequence of mRNA_M-pyrifera_M_contig88612.20571.1

>prot_M-pyrifera_M_contig88612.20571.1 ID=prot_M-pyrifera_M_contig88612.20571.1|Name=mRNA_M-pyrifera_M_contig88612.20571.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=272bp
ASNPTQPSSSPSTPSASSSSSPSASSSSSSSSSSSPSSPTSGSSASMPST
AGGSPGSSAGTPDTGTSGAQDTAQAGGVTQPTPASATGSDQGTGGDQGTA
SASAGDPAGGGQPAGEPGFEASTGGAALPDMRDNPTLDPGTLAALEAAME
AAAQGGNAGTGEGAGTGSETGAASGQWPGDTQGSSPGNGSAGTGPLTPAE
QVAILDARLEAGAGDFDTMILEEQARQRSARRASSDDTPASESAGGAPAG
GREGPYGEDITVAGAGGGRGSV

mRNA from alignment at M-pyrifera_M_contig88612:2..817+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig88612.20571.1 ID=mRNA_M-pyrifera_M_contig88612.20571.1|Name=mRNA_M-pyrifera_M_contig88612.20571.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig88612:2..817+ (Macrocystis pyrifera P11B4 male)
GCCAGCAACCCCACTCAGCCGTCCTCGTCACCCAGCACACCCTCCGCGTC
GTCCAGCAGCAGCCCGAGCGCATCGTCTTCCAGCTCGTCGTCCTCCAGCA
GTAGCCCGAGCTCACCCACCAGCGGCAGCAGCGCATCAATGCCCTCTACA
GCGGGTGGCTCACCCGGCAGCAGCGCGGGCACGCCCGACACGGGAACGTC
CGGAGCCCAGGACACTGCACAGGCAGGTGGCGTCACGCAGCCGACACCCG
CATCCGCTACCGGTAGCGACCAGGGTACGGGCGGCGACCAGGGCACAGCC
AGTGCGAGCGCCGGCGACCCCGCAGGCGGCGGGCAACCGGCGGGTGAGCC
GGGATTTGAAGCCAGCACCGGCGGTGCCGCCCTGCCCGACATGCGCGACA
ACCCAACGCTGGACCCCGGCACCCTCGCCGCTCTCGAAGCGGCCATGGAA
GCCGCCGCTCAAGGCGGCAATGCAGGCACGGGGGAAGGCGCCGGCACCGG
CAGCGAAACAGGTGCAGCGTCGGGGCAATGGCCGGGTGACACCCAAGGTA
GCTCGCCAGGCAATGGCAGTGCCGGCACCGGACCACTGACCCCGGCGGAA
CAAGTGGCCATTCTCGATGCGCGGCTGGAAGCCGGTGCGGGCGATTTCGA
CACCATGATTCTTGAAGAACAGGCCCGCCAGCGCAGCGCGCGCCGCGCCA
GCAGTGACGACACACCCGCCTCAGAGTCCGCGGGTGGCGCCCCGGCCGGC
GGCCGCGAGGGGCCCTACGGCGAAGATATCACCGTGGCCGGCGCCGGCGG
CGGGCGCGGCAGCGTC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88612:2..817+

>mRNA_M-pyrifera_M_contig88612.20571.1 ID=mRNA_M-pyrifera_M_contig88612.20571.1|Name=mRNA_M-pyrifera_M_contig88612.20571.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1632bp|location=Sequence derived from alignment at M-pyrifera_M_contig88612:2..817+ (Macrocystis pyrifera P11B4 male)
GCCAGCAACCCCACTCAGCCGTCCTCGTCACCCAGCACACCCTCCGCGTC
GTCCAGCAGCAGCCCGAGCGCATCGTCTTCCAGCTCGTCGTCCTCCAGCA
GTAGCCCGAGCTCACCCACCAGCGGCAGCAGCGCATCAATGCCCTCTACA
GCGGGTGGCTCACCCGGCAGCAGCGCGGGCACGCCCGACACGGGAACGTC
CGGAGCCCAGGACACTGCACAGGCAGGTGGCGTCACGCAGCCGACACCCG
CATCCGCTACCGGTAGCGACCAGGGTACGGGCGGCGACCAGGGCACAGCC
AGTGCGAGCGCCGGCGACCCCGCAGGCGGCGGGCAACCGGCGGGTGAGCC
GGGATTTGAAGCCAGCACCGGCGGTGCCGCCCTGCCCGACATGCGCGACA
ACCCAACGCTGGACCCCGGCACCCTCGCCGCTCTCGAAGCGGCCATGGAA
GCCGCCGCTCAAGGCGGCAATGCAGGCACGGGGGAAGGCGCCGGCACCGG
CAGCGAAACAGGTGCAGCGTCGGGGCAATGGCCGGGTGACACCCAAGGTA
GCTCGCCAGGCAATGGCAGTGCCGGCACCGGACCACTGACCCCGGCGGAA
CAAGTGGCCATTCTCGATGCGCGGCTGGAAGCCGGTGCGGGCGATTTCGA
CACCATGATTCTTGAAGAACAGGCCCGCCAGCGCAGCGCGCGCCGCGCCA
GCAGTGACGACACACCCGCCTCAGAGTCCGCGGGTGGCGCCCCGGCCGGC
GGCCGCGAGGGGCCCTACGGCGAAGATATCACCGTGGCCGGCGCCGGCGG
CGGGCGCGGCAGCGTCGCCAGCAACCCCACTCAGCCGTCCTCGTCACCCA
GCACACCCTCCGCGTCGTCCAGCAGCAGCCCGAGCGCATCGTCTTCCAGC
TCGTCGTCCTCCAGCAGTAGCCCGAGCTCACCCACCAGCGGCAGCAGCGC
ATCAATGCCCTCTACAGCGGGTGGCTCACCCGGCAGCAGCGCGGGCACGC
CCGACACGGGAACGTCCGGAGCCCAGGACACTGCACAGGCAGGTGGCGTC
ACGCAGCCGACACCCGCATCCGCTACCGGTAGCGACCAGGGTACGGGCGG
CGACCAGGGCACAGCCAGTGCGAGCGCCGGCGACCCCGCAGGCGGCGGGC
AACCGGCGGGTGAGCCGGGATTTGAAGCCAGCACCGGCGGTGCCGCCCTG
CCCGACATGCGCGACAACCCAACGCTGGACCCCGGCACCCTCGCCGCTCT
CGAAGCGGCCATGGAAGCCGCCGCTCAAGGCGGCAATGCAGGCACGGGGG
AAGGCGCCGGCACCGGCAGCGAAACAGGTGCAGCGTCGGGGCAATGGCCG
GGTGACACCCAAGGTAGCTCGCCAGGCAATGGCAGTGCCGGCACCGGACC
ACTGACCCCGGCGGAACAAGTGGCCATTCTCGATGCGCGGCTGGAAGCCG
GTGCGGGCGATTTCGACACCATGATTCTTGAAGAACAGGCCCGCCAGCGC
AGCGCGCGCCGCGCCAGCAGTGACGACACACCCGCCTCAGAGTCCGCGGG
TGGCGCCCCGGCCGGCGGCCGCGAGGGGCCCTACGGCGAAGATATCACCG
TGGCCGGCGCCGGCGGCGGGCGCGGCAGCGTC