mRNA_M-pyrifera_M_contig88611.20570.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88611.20570.1
Unique NamemRNA_M-pyrifera_M_contig88611.20570.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: A0A3D5DB47_9GAMM (dUTP diphosphatase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DB47_9GAMM)

HSP 1 Score: 183 bits (464), Expect = 4.000e-56
Identity = 91/137 (66.42%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRY 411
            VDIWHFGLS RI +DRD+   AA I DEWL  + S  FL +VE LAG AL  Q F +++VP LL DLGR FDDLY  YVGKNVLNFFRQDHGYRDG+YVKTW GREDNEHL+EI+  LD D+  F+  VYA LE RY
Sbjct:   66 VDIWHFGLSTRIGSDRDHKGTAAIIVDEWLEPSNSRSFLQNVESLAGFALREQGFLISMVPRLLDDLGRGFDDLYRTYVGKNVLNFFRQDHGYRDGSYVKTWDGREDNEHLIEILGVLDVDDAEFQTLVYAGLEERY 202          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: A0A3B9AFY0_9GAMM (dUTP diphosphatase n=2 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A3B9AFY0_9GAMM)

HSP 1 Score: 152 bits (383), Expect = 6.160e-44
Identity = 79/138 (57.25%), Postives = 95/138 (68.84%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAG-FLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRY 411
            VDIWHFG+S  +  D DY A A+ +A   L   P+AG F  ++E  A   L +QRFD     +LL D+G  FD+LY  Y+GKNVLNFFRQDHGY+DGTY KTW GREDNEHL E+V ALDP  P F+D +YAAL  RY
Sbjct:   58 VDIWHFGMSDLLGGDGDYQALASRLAPA-LTRFPAAGDFRRNLEVFASDTLQHQRFDPRKFASLLSDVGLSFDELYSQYIGKNVLNFFRQDHGYQDGTYRKTWAGREDNEHLAELVVALDPARPEFKDLLYAALAERY 194          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: A0A2A5GC17_9GAMM (dUTP diphosphatase n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2A5GC17_9GAMM)

HSP 1 Score: 145 bits (367), Expect = 1.990e-41
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRY 411
            VDIWHFGLS+ +      A  A+ +  +   A PS  F  D+E  A A L ++RFDVA   +L+  +   FD+LY  YVGKNVLNFFRQD+GY+DG+Y K W+G+EDNEHLVE+VA LD + P F+D +Y ALE RY
Sbjct:   65 VDIWHFGLSILLLESNSKADIASAVEQQLAEARPSGDFRADLETFALATLQSKRFDVASFASLMAGIELPFDELYTRYVGKNVLNFFRQDNGYQDGSYRKLWNGKEDNEHLVEVVAELDHNSPKFKDDLYQALEQRY 201          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: UPI0004104E7E (dUTP diphosphatase n=1 Tax=Marinimicrobium agarilyticum TaxID=306546 RepID=UPI0004104E7E)

HSP 1 Score: 145 bits (367), Expect = 1.990e-41
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWH-GREDNEHLVEIVAALDPDEPAFRDRVYAALESRY 411
            +DIWHFGLS+R+    D  A AA I  E +V      F  D+E  AGA L +Q+F +     ++  +   FD+LY  YVGKNVLNFFRQD+GY++G+Y K WH GREDNEHLVE+V +LD   P+F+D +YAALE RY
Sbjct:   67 IDIWHFGLSIRLQGSDDLDALAADIDQELIVKTDEPDFRLDLEAFAGATLADQQFHIGKFGRMMAGIRMSFDELYRGYVGKNVLNFFRQDNGYKEGSYRKNWHDGREDNEHLVEVVHSLDAASPSFKDELYAALEGRY 204          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: A0A1I1M7P9_9GAMM (Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily n=3 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A1I1M7P9_9GAMM)

HSP 1 Score: 145 bits (365), Expect = 3.990e-41
Identity = 70/137 (51.09%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRY 411
            VDI+HFGL++RI     Y   A  + DE  V   +  F   +E LAGAA+ N+ FD A     +  +G + +DL+C YVGKN LNFFRQDHGY+DG+Y+K W+G EDNEHLVE+V +LD + P F   VY  LESRY
Sbjct:   68 VDIFHFGLALRIDGTTSYQDLANALMDEMSVPKTADDFKQTLELLAGAAVTNKEFDAAAFAGCMKQIGMNLNDLFCGYVGKNTLNFFRQDHGYKDGSYIKVWNGLEDNEHLVEVVKSLDTEHPDFSKLVYQGLESRY 204          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: UPI001420C1E2 (dUTP diphosphatase n=1 Tax=Pseudomaricurvus alkylphenolicus TaxID=1306991 RepID=UPI001420C1E2)

HSP 1 Score: 144 bits (363), Expect = 8.010e-41
Identity = 73/140 (52.14%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRYGEV 420
            +DIWHFGLS+ + + +   A A TI  E ++A     F  D+ER AG  L  + F VA    L+  +  DF+ L+  YVGKNVLNFFRQDHGY+DGTY K W GREDNEHLVE   ALD  EP F+D++Y AL  RY  V
Sbjct:   65 IDIWHFGLSILLQSGQSSEAIATTIEKELVLATDEEDFRLDLERFAGEVLTTRSFSVASFGRLMAGIDMDFEMLFKGYVGKNVLNFFRQDHGYQDGTYTKIWDGREDNEHLVEASQALDAAEPDFQDQLYRALSQRYQAV 204          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: A0A316FZI6_9GAMM (Dimeric dUTPase (All-alpha-NTP-PPase superfamily) n=1 Tax=Pleionea mediterranea TaxID=523701 RepID=A0A316FZI6_9GAMM)

HSP 1 Score: 142 bits (357), Expect = 7.230e-40
Identity = 70/137 (51.09%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRY 411
            VDI+HFGLS RI    DY   AA +A+E   A   A F   +E LA +AL    FD       +  +  DF +LY +YVGKN LNFFRQDHGY+DG+Y+K WHG+EDNEHL+E++  LD  +P FR +VY  L+SRY
Sbjct:   72 VDIFHFGLSCRINGVDDYTVIAAQLAEEMSQAKQGANFPETLEMLAASALTMHGFDAQAFIGCMRQIDMDFAELYRSYVGKNTLNFFRQDHGYKDGSYIKVWHGKEDNEHLIEVLNELDITDPEFRQQVYLGLKSRY 208          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: A0A3C7VWE8_9GAMM (dUTP diphosphatase n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A3C7VWE8_9GAMM)

HSP 1 Score: 140 bits (353), Expect = 2.130e-39
Identity = 76/139 (54.68%), Postives = 92/139 (66.19%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLG-DVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRYG 414
            VDIWHFGLSM +  D D+AA A  IA +   AAP+   L    E LA  AL ++RF V     L+      F+DLY AYVGKNVLNFFRQD+GY+DG+Y KTW GREDNEHL E++ +LD     F +R+YAAL  RYG
Sbjct:   58 VDIWHFGLSMLLLEDDDHAALAGRIAADIEQAAPATDDLRLATEALAAEALASRRFSVTAFRDLMATADLGFEDLYTAYVGKNVLNFFRQDNGYQDGSYRKTWSGREDNEHLHELLGSLDGSAADFPERLYAALGERYG 196          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: A0A0F4PJ10_9GAMM (dUTP diphosphatase n=6 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A0F4PJ10_9GAMM)

HSP 1 Score: 140 bits (353), Expect = 2.600e-39
Identity = 69/137 (50.36%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRY 411
            VDI+HFGLS+RI     +A  AA I  E       A F   +E LA +A+ ++ F+ A     +  +G + DDLY  YVGKN LNFFRQDHGY+DGTY+K WHG+EDNEHLV +V +LD D P F   VY  L+ RY
Sbjct:   68 VDIFHFGLSLRIDGHTSFAELAAQIEQEMQSPIQGADFKVSLETLAASAVADKAFNAAAFAGCMQQIGMNIDDLYRGYVGKNTLNFFRQDHGYKDGTYIKVWHGQEDNEHLVAVVKSLDTDNPDFAKLVYQGLQQRY 204          
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Match: A0A0A7ECR0_9GAMM (dUTP diphosphatase n=6 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A0A7ECR0_9GAMM)

HSP 1 Score: 140 bits (352), Expect = 3.680e-39
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 VDIWHFGLSMRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAVVPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNEHLVEIVAALDPDEPAFRDRVYAALESRY 411
            VDI+HFGLS+RI     Y   A  +  E      +  F   +E LA +A+ N+ FD A     +  +G D DDLY  YVGKN LNFFRQDHGY+DG+Y+K WHG+EDNEHLVE+V +LD ++  F D VY  L+ RY
Sbjct:   68 VDIFHFGLSLRIDGTTSYQEIAEQLTSELEQPTQAEDFKQTLELLAASAVANKTFDAAAFAGCMAQIGMDIDDLYRGYVGKNTLNFFRQDHGYKDGSYIKVWHGQEDNEHLVEVVKSLDINQANFADLVYQGLKERY 204          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88611.20570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DB47_9GAMM4.000e-5666.42dUTP diphosphatase n=1 Tax=Gammaproteobacteria bac... [more]
A0A3B9AFY0_9GAMM6.160e-4457.25dUTP diphosphatase n=2 Tax=Porticoccaceae bacteriu... [more]
A0A2A5GC17_9GAMM1.990e-4152.55dUTP diphosphatase n=1 Tax=Porticoccaceae bacteriu... [more]
UPI0004104E7E1.990e-4152.17dUTP diphosphatase n=1 Tax=Marinimicrobium agarily... [more]
A0A1I1M7P9_9GAMM3.990e-4151.09Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superf... [more]
UPI001420C1E28.010e-4152.14dUTP diphosphatase n=1 Tax=Pseudomaricurvus alkylp... [more]
A0A316FZI6_9GAMM7.230e-4051.09Dimeric dUTPase (All-alpha-NTP-PPase superfamily) ... [more]
A0A3C7VWE8_9GAMM2.130e-3954.68dUTP diphosphatase n=1 Tax=Halieaceae bacterium Ta... [more]
A0A0F4PJ10_9GAMM2.600e-3950.36dUTP diphosphatase n=6 Tax=Pseudoalteromonas TaxID... [more]
A0A0A7ECR0_9GAMM3.680e-3949.64dUTP diphosphatase n=6 Tax=Pseudoalteromonas TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88611contigM-pyrifera_M_contig88611:387..815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score127.5
Seed ortholog evalue4.7e-27
Seed eggNOG ortholog1122194.AUHU01000002_gene2943
Preferred namedut
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dUTPase
EggNOG OGs1RAX1@1224,1RYFG@1236,465HS@72275,COG4508@1,COG4508@2
COG Functional cat.S
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size402
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.2290528-CDS-M-pyrifera_M_contig88611:386..7881622816796.2290528-CDS-M-pyrifera_M_contig88611:386..788Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88611 387..788 -
1692278183.6477282-CDS-M-pyrifera_M_contig88611:386..7881692278183.6477282-CDS-M-pyrifera_M_contig88611:386..788Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88611 387..788 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.2400186-UTR-M-pyrifera_M_contig88611:788..8151622816796.2400186-UTR-M-pyrifera_M_contig88611:788..815Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88611 789..815 -
1692278183.6608825-UTR-M-pyrifera_M_contig88611:788..8151692278183.6608825-UTR-M-pyrifera_M_contig88611:788..815Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88611 789..815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88611.20570.1prot_M-pyrifera_M_contig88611.20570.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88611 387..788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88611.20570.1

>prot_M-pyrifera_M_contig88611.20570.1 ID=prot_M-pyrifera_M_contig88611.20570.1|Name=mRNA_M-pyrifera_M_contig88611.20570.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MRITADRDYAAAAATIADEWLVAAPSAGFLGDVERLAGAALVNQRFDVAV
VPTLLGDLGRDFDDLYCAYVGKNVLNFFRQDHGYRDGTYVKTWHGREDNE
HLVEIVAALDPDEPAFRDRVYAALESRYGEVTN*
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mRNA from alignment at M-pyrifera_M_contig88611:387..815-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88611.20570.1 ID=mRNA_M-pyrifera_M_contig88611.20570.1|Name=mRNA_M-pyrifera_M_contig88611.20570.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig88611:387..815- (Macrocystis pyrifera P11B4 male)
GTCGACATCTGGCACTTCGGCTTGAGTATGCGCATCACGGCGGATCGCGA TTACGCCGCTGCCGCCGCGACGATCGCCGATGAATGGCTCGTGGCGGCGC CGAGCGCGGGATTTCTCGGCGACGTGGAACGTCTCGCCGGCGCGGCACTC GTGAATCAGCGCTTCGATGTTGCCGTCGTGCCGACCTTGCTCGGCGACCT CGGGCGGGATTTCGACGATCTGTATTGCGCCTATGTGGGCAAGAACGTGT TGAACTTTTTTCGCCAGGACCACGGTTACCGTGACGGTACGTATGTGAAA ACCTGGCACGGCCGGGAAGACAACGAACACCTCGTCGAGATCGTTGCGGC ACTGGACCCCGATGAGCCCGCGTTCCGCGATCGCGTGTATGCCGCGCTCG AGTCCCGCTATGGCGAAGTGACGAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88611:387..815-

>mRNA_M-pyrifera_M_contig88611.20570.1 ID=mRNA_M-pyrifera_M_contig88611.20570.1|Name=mRNA_M-pyrifera_M_contig88611.20570.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig88611:387..815- (Macrocystis pyrifera P11B4 male)
ATGCGCATCACGGCGGATCGCGATTACGCCGCTGCCGCCGCGACGATCGC
CGATGAATGGCTCGTGGCGGCGCCGAGCGCGGGATTTCTCGGCGACGTGG
AACGTCTCGCCGGCGCGGCACTCGTGAATCAGCGCTTCGATGTTGCCGTC
GTGCCGACCTTGCTCGGCGACCTCGGGCGGGATTTCGACGATCTGTATTG
CGCCTATGTGGGCAAGAACGTGTTGAACTTTTTTCGCCAGGACCACGGTT
ACCGTGACGGTACGTATGTGAAAACCTGGCACGGCCGGGAAGACAACGAA
CACCTCGTCGAGATCGTTGCGGCACTGGACCCCGATGAGCCCGCGTTCCG
CGATCGCGTGTATGCCGCGCTCGAGTCCCGCTATGGCGAAGTGACGAACT
GAATGCGCATCACGGCGGATCGCGATTACGCCGCTGCCGCCGCGACGATC
GCCGATGAATGGCTCGTGGCGGCGCCGAGCGCGGGATTTCTCGGCGACGT
GGAACGTCTCGCCGGCGCGGCACTCGTGAATCAGCGCTTCGATGTTGCCG
TCGTGCCGACCTTGCTCGGCGACCTCGGGCGGGATTTCGACGATCTGTAT
TGCGCCTATGTGGGCAAGAACGTGTTGAACTTTTTTCGCCAGGACCACGG
TTACCGTGACGGTACGTATGTGAAAACCTGGCACGGCCGGGAAGACAACG
AACACCTCGTCGAGATCGTTGCGGCACTGGACCCCGATGAGCCCGCGTTC
CGCGATCGCGTGTATGCCGCGCTCGAGTCCCGCTATGGCGAAGTGACGAA
CTGA
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