mRNA_M-pyrifera_M_contig88607.20566.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88607.20566.1
Unique NamemRNA_M-pyrifera_M_contig88607.20566.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A6J5XQ66_PRUAR (Uncharacterized protein n=2 Tax=Prunus TaxID=3754 RepID=A0A6J5XQ66_PRUAR)

HSP 1 Score: 280 bits (716), Expect = 1.490e-95
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY 393
            MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY
Sbjct:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY 131
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A7N2N6W3_QUELO (Uncharacterized protein n=28 Tax=Pentapetalae TaxID=1437201 RepID=A0A7N2N6W3_QUELO)

HSP 1 Score: 271 bits (693), Expect = 4.800e-92
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY 393
            MK+DGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRS PAGAENPSLS LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY
Sbjct:    1 MKMDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY 131
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A5E4GMM3_PRUDU (PREDICTED: cell wall-associated hydrolase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GMM3_PRUDU)

HSP 1 Score: 261 bits (667), Expect = 7.100e-87
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRG 369
            MKIDGEC IELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRG
Sbjct:    1 MKIDGECPIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRG 123
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A2G2Y1R8_CAPAN (Uncharacterized protein n=3 Tax=Capsicum TaxID=4071 RepID=A0A2G2Y1R8_CAPAN)

HSP 1 Score: 256 bits (655), Expect = 3.100e-86
Identity = 124/132 (93.94%), Postives = 125/132 (94.70%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQ-NFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY 393
            MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQ NFCRS PAGAENPSLS LCYR+LWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVY GHDNWYTRG SFPVL Y
Sbjct:    1 MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNFCRSIPAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYCGHDNWYTRGVSFPVLLY 132
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A4Y7L892_PAPSO (Uncharacterized protein n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A4Y7L892_PAPSO)

HSP 1 Score: 256 bits (654), Expect = 4.400e-86
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLS 390
            MKIDGECLIELIGSCRNKVQVY+SVRMPQLHTSLHFHLTPIVMIN SSR DLLL+SQNFCRS PAG ENPSLS LCYRRLWGSRNRRALILGW YYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLS
Sbjct:    1 MKIDGECLIELIGSCRNKVQVYQSVRMPQLHTSLHFHLTPIVMINDSSRCDLLLDSQNFCRSIPAGEENPSLSRLCYRRLWGSRNRRALILGWDYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLS 130
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A6D2KAP5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KAP5_9BRAS)

HSP 1 Score: 258 bits (658), Expect = 1.190e-85
Identity = 123/131 (93.89%), Postives = 123/131 (93.89%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY 393
            MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC S PAGAENP LS LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFP   Y
Sbjct:    1 MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPSNFY 131
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A5D2RJK5_GOSTO (Uncharacterized protein n=20 Tax=rosids TaxID=71275 RepID=A0A5D2RJK5_GOSTO)

HSP 1 Score: 254 bits (650), Expect = 1.740e-85
Identity = 122/131 (93.13%), Postives = 122/131 (93.13%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY 393
            MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC S PAG ENP  S LCYRRLWGSRNRRALILGWAYYL AFSSYPL TWLPSVYRGH NWYTRGASFPVLSY
Sbjct:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHSIPAGTENPLPSRLCYRRLWGSRNRRALILGWAYYLYAFSSYPLCTWLPSVYRGHGNWYTRGASFPVLSY 131
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A7J6ENJ4_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6ENJ4_CANSA)

HSP 1 Score: 254 bits (649), Expect = 4.220e-85
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGA 372
            MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSR DLLLNSQNF RSTPAGAENPSLSWLCYRRLWGS+NRRALILGWAYYLD+FSSYPLRTWLPSVYRGHDNWYTRG 
Sbjct:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRCDLLLNSQNFYRSTPAGAENPSLSWLCYRRLWGSQNRRALILGWAYYLDSFSSYPLRTWLPSVYRGHDNWYTRGG 124
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: A0A6D2JLF7_9BRAS (Uncharacterized protein n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A6D2JLF7_9BRAS)

HSP 1 Score: 259 bits (662), Expect = 4.830e-85
Identity = 123/128 (96.09%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPV 384
            MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC S PAGAENP LS LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPV
Sbjct:    1 MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCHSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPV 128
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BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Match: Q3BAI1_PHAAO (Uncharacterized protein rps12 n=2 Tax=Orchidaceae TaxID=4747 RepID=Q3BAI1_PHAAO)

HSP 1 Score: 253 bits (646), Expect = 7.070e-85
Identity = 120/131 (91.60%), Postives = 123/131 (93.89%), Query Frame = 1 
Query:    1 MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGASFPVLSY 393
            MKIDGECLIELI SCRNKVQ+ RSVRMPQLHTSLHFHLTPIVMINGSSRRDL+L+SQ FCRS P GAENP LS LCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYR HDNWYTRGASFPVLSY
Sbjct:    1 MKIDGECLIELIRSCRNKVQISRSVRMPQLHTSLHFHLTPIVMINGSSRRDLILDSQYFCRSIPTGAENPPLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRRHDNWYTRGASFPVLSY 131
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88607.20566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J5XQ66_PRUAR1.490e-95100.00Uncharacterized protein n=2 Tax=Prunus TaxID=3754 ... [more]
A0A7N2N6W3_QUELO4.800e-9297.71Uncharacterized protein n=28 Tax=Pentapetalae TaxI... [more]
A0A5E4GMM3_PRUDU7.100e-8799.19PREDICTED: cell wall-associated hydrolase n=1 Tax=... [more]
A0A2G2Y1R8_CAPAN3.100e-8693.94Uncharacterized protein n=3 Tax=Capsicum TaxID=407... [more]
A0A4Y7L892_PAPSO4.400e-8693.85Uncharacterized protein n=4 Tax=Mesangiospermae Ta... [more]
A0A6D2KAP5_9BRAS1.190e-8593.89Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A5D2RJK5_GOSTO1.740e-8593.13Uncharacterized protein n=20 Tax=rosids TaxID=7127... [more]
A0A7J6ENJ4_CANSA4.220e-8595.97Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]
A0A6D2JLF7_9BRAS4.830e-8596.09Uncharacterized protein n=3 Tax=Pentapetalae TaxID... [more]
Q3BAI1_PHAAO7.070e-8591.60Uncharacterized protein rps12 n=2 Tax=Orchidaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88607contigM-pyrifera_M_contig88607:384..817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score267.7
Seed ortholog evalue2.9e-69
Seed eggNOG ortholog4155.Migut.D01391.1.p
Hectar predicted targeting categoryother localisation
EggNOG OGs2A03K@1,2RXXN@2759,37U9Z@33090,3GIHS@35493,44N0K@71274
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size434
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.083568-CDS-M-pyrifera_M_contig88607:383..7791622816796.083568-CDS-M-pyrifera_M_contig88607:383..779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88607 384..779 +
1692278183.580227-CDS-M-pyrifera_M_contig88607:383..7791692278183.580227-CDS-M-pyrifera_M_contig88607:383..779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88607 384..779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.0950124-UTR-M-pyrifera_M_contig88607:779..8171622816796.0950124-UTR-M-pyrifera_M_contig88607:779..817Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88607 780..817 +
1692278183.5958793-UTR-M-pyrifera_M_contig88607:779..8171692278183.5958793-UTR-M-pyrifera_M_contig88607:779..817Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88607 780..817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88607.20566.1prot_M-pyrifera_M_contig88607.20566.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88607 384..779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88607.20566.1

>prot_M-pyrifera_M_contig88607.20566.1 ID=prot_M-pyrifera_M_contig88607.20566.1|Name=mRNA_M-pyrifera_M_contig88607.20566.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRR
DLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAF
SSYPLRTWLPSVYRGHDNWYTRGASFPVLSY*
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mRNA from alignment at M-pyrifera_M_contig88607:384..817+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88607.20566.1 ID=mRNA_M-pyrifera_M_contig88607.20566.1|Name=mRNA_M-pyrifera_M_contig88607.20566.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=434bp|location=Sequence derived from alignment at M-pyrifera_M_contig88607:384..817+ (Macrocystis pyrifera P11B4 male)
ATGAAAATAGATGGCGAGTGCCTGATCGAATTGATCGGGTCATGTAGGAA
CAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCAC
TGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGT
GACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCACCCCCGCAGGGGC
AGAAAACCCATCGCTGTCTTGGCTGTGCTACCGGAGGCTCTGGGGAAGTC
GGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTC
AGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGA
TAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAA
AGGTCCTCTCAATGCTCTAACGCCCACACCGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88607:384..817+

>mRNA_M-pyrifera_M_contig88607.20566.1 ID=mRNA_M-pyrifera_M_contig88607.20566.1|Name=mRNA_M-pyrifera_M_contig88607.20566.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig88607:384..817+ (Macrocystis pyrifera P11B4 male)
ATGAAAATAGATGGCGAGTGCCTGATCGAATTGATCGGGTCATGTAGGAA
CAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCAC
TGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGT
GACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCACCCCCGCAGGGGC
AGAAAACCCATCGCTGTCTTGGCTGTGCTACCGGAGGCTCTGGGGAAGTC
GGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTC
AGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGA
TAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGATGA
AAATAGATGGCGAGTGCCTGATCGAATTGATCGGGTCATGTAGGAACAAG
GTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCA
CTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCGTGACC
TTCTCTTGAATTCTCAAAACTTCTGTCGCTCCACCCCCGCAGGGGCAGAA
AACCCATCGCTGTCTTGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAA
TAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCA
GTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAAC
TGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAG
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