mRNA_M-pyrifera_M_contig88607.20565.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88607.20565.1
Unique NamemRNA_M-pyrifera_M_contig88607.20565.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: U5CVD1_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5CVD1_AMBTC)

HSP 1 Score: 126 bits (317), Expect = 2.040e-36
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1
Query:   40 EKNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG 231
            E  +GLTITS+YAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG
Sbjct:   29 ELGWGLTITSRYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG 92          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A5D3BPI7_CUCME (Uncharacterized protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A5D3BPI7_CUCME)

HSP 1 Score: 125 bits (315), Expect = 4.000e-36
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   43 KNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG 231
            KN+GLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYC DDTVGEVLRKNSST G
Sbjct:   29 KNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCSDDTVGEVLRKNSSTSG 91          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A445BUJ7_ARAHY (Uncharacterized protein n=4 Tax=Magnoliopsida TaxID=3398 RepID=A0A445BUJ7_ARAHY)

HSP 1 Score: 120 bits (302), Expect = 4.860e-34
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1
Query:   52 GLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG 231
            GLT+ SQYAF+SCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSS PG
Sbjct:   40 GLTMNSQYAFISCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSAPG 99          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A5A7V9S8_CUCME (Uncharacterized protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V9S8_CUCME)

HSP 1 Score: 117 bits (294), Expect = 7.370e-33
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   13 GATEVLRIQEKNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTP 228
            G   +L    KN+GLTITSQYAFLSCLSSFMVRYSGVLGVEE HQSIP  VVKLYCGDDTVGEVLRKNSSTP
Sbjct:    3 GQRPLLSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEAHQSIPK-VVKLYCGDDTVGEVLRKNSSTP 73          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A0D2SMV0_GOSRA (Uncharacterized protein n=26 Tax=Gossypium TaxID=3633 RepID=A0A0D2SMV0_GOSRA)

HSP 1 Score: 113 bits (282), Expect = 2.880e-31
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   43 KNFGLTITSQYAF--LSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG 231
            KN+GL +TSQYAF  L+ LSSFMVRYSGVLGVEE HQSIPNLVVKLYCGDDTVGEVLR+NSSTPG
Sbjct:   13 KNWGLIVTSQYAFPFLARLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGDDTVGEVLRQNSSTPG 77          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A6N2NAY5_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2NAY5_SALVM)

HSP 1 Score: 122 bits (307), Expect = 6.330e-31
Identity = 66/105 (62.86%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 PCGGGATEVLRIQEK------------------------------NFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSST 225
            PCG GATEVLRIQEK                              N+GLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCG+DTVGE +  N S+
Sbjct:  457 PCGDGATEVLRIQEKTGRLEPCSYMTRSIRSVMEGQRPLVSPTVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGEDTVGEGIPGNRSS 561          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A5N6LV43_9ASTR (Uncharacterized protein n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A5N6LV43_9ASTR)

HSP 1 Score: 114 bits (285), Expect = 1.950e-30
Identity = 63/109 (57.80%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 PCGGGATEVLRIQEKNFGLTITSQYA--------------------------------FLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG 231
            PCG GATEVLRIQEK         Y                                 F+SCLSSFMVRYSGVL +EEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG
Sbjct:   73 PCGDGATEVLRIQEKVTARRAVYHYDRCQVELCPPSLSSKGWKGRVLWCPELGPRNHYFISCLSSFMVRYSGVLVIEEPHQSIPNLVVKLYCGDDTVGEVLRKNSSTPG 181          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A5K1HK92_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HK92_9MAGN)

HSP 1 Score: 105 bits (263), Expect = 4.250e-28
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    7 GGGATEVLRIQEKNFGLTITSQY--AFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRK 213
            G G   ++ +  KN+GLTITSQY  AFLSCLSSFMVRYSG LGVEEPHQSIPNLVVKLYCGDDTVG    K
Sbjct:   13 GRGRFPLVSLPVKNWGLTITSQYNNAFLSCLSSFMVRYSGALGVEEPHQSIPNLVVKLYCGDDTVGRSCGK 83          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A6D2K9K4_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K9K4_9BRAS)

HSP 1 Score: 107 bits (266), Expect = 4.660e-28
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1
Query:   43 KNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSST 225
            KN+ LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGDDTVGE    N+S+
Sbjct:   13 KNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGDDTVGEGTPGNTSS 73          
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Match: A0A6D2HB29_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HB29_9BRAS)

HSP 1 Score: 107 bits (266), Expect = 4.930e-28
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1
Query:   43 KNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRKNSST 225
            KN+ LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGDDTVGE    N+S+
Sbjct:   13 KNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGDDTVGEGTPGNTSS 73          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88607.20565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U5CVD1_AMBTC2.040e-3693.75Uncharacterized protein n=1 Tax=Amborella trichopo... [more]
A0A5D3BPI7_CUCME4.000e-3695.24Uncharacterized protein n=3 Tax=Mesangiospermae Ta... [more]
A0A445BUJ7_ARAHY4.860e-3493.33Uncharacterized protein n=4 Tax=Magnoliopsida TaxI... [more]
A0A5A7V9S8_CUCME7.370e-3383.33Uncharacterized protein n=1 Tax=Cucumis melo var. ... [more]
A0A0D2SMV0_GOSRA2.880e-3186.15Uncharacterized protein n=26 Tax=Gossypium TaxID=3... [more]
A0A6N2NAY5_SALVM6.330e-3162.86Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A5N6LV43_9ASTR1.950e-3057.80Uncharacterized protein n=3 Tax=Pentapetalae TaxID... [more]
A0A5K1HK92_9MAGN4.250e-2874.65Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
A0A6D2K9K4_9BRAS4.660e-2883.61Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A6D2HB29_9BRAS4.930e-2883.61Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88607contigM-pyrifera_M_contig88607:62..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score127.1
Seed ortholog evalue3.6e-27
Seed eggNOG ortholog13333.ERN07643
Hectar predicted targeting categoryother localisation
EggNOG OGs2E2A6@1,2S9I6@2759,37WNR@33090,3GKTZ@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.0391254-CDS-M-pyrifera_M_contig88607:61..2501622816796.0391254-CDS-M-pyrifera_M_contig88607:61..250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88607 62..250 -
1692278183.5605333-CDS-M-pyrifera_M_contig88607:61..2501692278183.5605333-CDS-M-pyrifera_M_contig88607:61..250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88607 62..250 -
1622816796.0511987-CDS-M-pyrifera_M_contig88607:536..5811622816796.0511987-CDS-M-pyrifera_M_contig88607:536..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88607 537..581 -
1692278183.5709116-CDS-M-pyrifera_M_contig88607:536..5811692278183.5709116-CDS-M-pyrifera_M_contig88607:536..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88607 537..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88607.20565.1prot_M-pyrifera_M_contig88607.20565.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88607 62..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88607.20565.1

>prot_M-pyrifera_M_contig88607.20565.1 ID=prot_M-pyrifera_M_contig88607.20565.1|Name=mRNA_M-pyrifera_M_contig88607.20565.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
PCGGGATEVLRIQEKNFGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQS
IPNLVVKLYCGDDTVGEVLRKNSSTPG*
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mRNA from alignment at M-pyrifera_M_contig88607:62..581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88607.20565.1 ID=mRNA_M-pyrifera_M_contig88607.20565.1|Name=mRNA_M-pyrifera_M_contig88607.20565.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=520bp|location=Sequence derived from alignment at M-pyrifera_M_contig88607:62..581- (Macrocystis pyrifera P11B4 male)
CCCTGCGGGGGTGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCAC GGCGAGACGAGCCGTTTATCATTACGATAGGTGTCAAGTGGAAGTGCAGT GATGTATGCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTT CCTACATGACCCGATCAATTCGATCAGGCACTCGCCATCTATTTTCATTA TTCAACTCTTTGACAACACGAAAAACCATTGTTCAACTCTTTGACAACAT GAAAAACCAAAAGCTCTGCCCTCCCCTCTATCTATCCAAGGGATGGAAGG GCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTTTGGCCTCACAATCA CTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATAT TCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGT GGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAA ATAGCTCGACGCCAGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88607:62..581-

>mRNA_M-pyrifera_M_contig88607.20565.1 ID=mRNA_M-pyrifera_M_contig88607.20565.1|Name=mRNA_M-pyrifera_M_contig88607.20565.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig88607:62..581- (Macrocystis pyrifera P11B4 male)
CCCTGCGGGGGTGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGCCCTG
CGGGGGTGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGAATTTTGGCC
TCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATG
GTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCC
GAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCC
TGCGGAAAAATAGCTCGACGCCAGGATGAAATTTTGGCCTCACAATCACT
AGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTC
TGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGG
TTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAAT
AGCTCGACGCCAGGATGA
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