mRNA_M-pyrifera_M_contig88605.20564.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88605.20564.1
Unique NamemRNA_M-pyrifera_M_contig88605.20564.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: D7G1P4_ECTSI (Biopterin transport-related protein BT1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.330e-29
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1
Query:    1 NIPGSSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKEVP 195
            N+ G+SP QQN++ TL  LPWSFKLVYGFISDNFPIGG RRKPYF++GW VYVL NLY ATKEVP
Sbjct:  102 NVIGASPGQQNIMLTLAQLPWSFKLVYGFISDNFPIGGMRRKPYFIMGWLVYVLTNLYVATKEVP 166          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: A0A835Z8G1_9STRA (Biopterin transport-related protein BT1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.240e-22
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   10 GSSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKEVP 195
            G+SP+QQNV+ TL  LPWSFKLVYGFISDNFPIGG RRKPYF+ GW +Y + NL  A    P
Sbjct:   39 GASPSQQNVVVTLAMLPWSFKLVYGFISDNFPIGGMRRKPYFIAGWFIYSMCNLLLAATGRP 100          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 6.020e-17
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 NIPGSSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKEVP 195
            ++  +SPAQQ+V+ T+ +LPWSFKL YGF+SD  PI G RRKPYF++GW +Y+L +L  A    P
Sbjct:   92 HVLDASPAQQSVVRTMQSLPWSFKLAYGFLSDCVPIRGMRRKPYFILGWTIYLLCHLTLAALIQP 156          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: A0A1Z5K9Z9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9Z9_FISSO)

HSP 1 Score: 81.6 bits (200), Expect = 1.580e-16
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   13 SSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKEVP 195
            ++PA+ NVLFT+ A+PW FK++YGF+SD  PI G RRKPYF+ GW V+++ NL      +P
Sbjct:  245 ATPAEVNVLFTVMAVPWCFKVIYGFLSDCLPISGLRRKPYFMTGWVVFIVSNLILMINPIP 305          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: A0A7S1FNC7_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNC7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.030e-16
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   10 GSSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKEVP 195
            G++ A+ NVLFT+ A+PW FK++YGF+SD  PI G RRKPYF+ GW +YV+ NL     + P
Sbjct:  328 GATAAEVNVLFTVMAVPWCFKVLYGFLSDCVPISGLRRKPYFMTGWVLYVVCNLILCVAQQP 389          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: W7TKM6_9STRA (Folate biopterin transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKM6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.390e-15
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   19 PAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKEVP 195
            PAQ N+  T+ ALPWSFK++YG +SD  PI GKRRKPYFVIGW+ +V +NL  A+   P
Sbjct:  169 PAQLNIAGTMLALPWSFKVLYGLLSDCVPIMGKRRKPYFVIGWSAFVAMNLGLASLGEP 227          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: A0A836CBB7_9STRA (Folate-biopterin transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.120e-14
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   13 SSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKEVP 195
            + PAQQN +  L ++PWSFKL+YGF+SD  P+GG RRKPYF +G+A++    L  A  E P
Sbjct:   76 AQPAQQNTIGVLLSIPWSFKLLYGFVSDVLPVGGLRRKPYFALGFALHSACFLLLAALEKP 136          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: B8C394_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C394_THAPS)

HSP 1 Score: 67.0 bits (162), Expect = 2.030e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   13 SSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKEVP 195
            +S AQQ  + +L +LP +FKL +GF+SDNFP+GG RRK Y +IGWAV  L  L  A   +P
Sbjct:    4 ASEAQQATISSLKSLPSTFKLAFGFLSDNFPLGGYRRKSYMLIGWAVTSL-TLIGAPPSIP 63          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: A0A8K1FFQ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFQ5_PYTOL)

HSP 1 Score: 64.7 bits (156), Expect = 1.440e-10
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 NIPGSSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKE 189
            N+ G+     NVL T+   PWSFK+VYG +SD FPI G RR+P+ +IGW+V  LV    A  +
Sbjct:   88 NMEGTQIVSANVLLTM---PWSFKVVYGILSDCFPIFGYRRRPFMMIGWSVCALVLFVMACMK 147          
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Match: A0A8K1CA05_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA05_PYTOL)

HSP 1 Score: 64.7 bits (156), Expect = 1.440e-10
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    1 NIPGSSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWAVYVLVNLYTATKE 189
            N+ G+     +VL T+   PWSFK+VYG +SD FPI G RR+P+ +IGW V  LV L     E
Sbjct:  100 NMEGTQIVSASVLLTM---PWSFKVVYGILSDCFPIFGYRRRPFMIIGWTVCALVLLVMGCME 159          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88605.20564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1P4_ECTSI1.330e-2976.92Biopterin transport-related protein BT1 n=2 Tax=Ec... [more]
A0A835Z8G1_9STRA3.240e-2267.74Biopterin transport-related protein BT1 n=1 Tax=Tr... [more]
A0A6V1WMI5_HETAK6.020e-1753.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5K9Z9_FISSO1.580e-1652.46Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1FNC7_9STRA4.030e-1653.23Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
W7TKM6_9STRA1.390e-1559.32Folate biopterin transporter n=2 Tax=Monodopsidace... [more]
A0A836CBB7_9STRA3.120e-1452.46Folate-biopterin transporter n=1 Tax=Tribonema min... [more]
B8C394_THAPS2.030e-1152.46Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A8K1FFQ5_PYTOL1.440e-1047.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K1CA05_PYTOL1.440e-1047.62Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88605contigM-pyrifera_M_contig88605:179..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog2880.D7G1P4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.BT1 family
EggNOG OGs29S8M@1,2RXD7@2759
Ec32 ortholog descriptionBiopterin transport-related protein BT1
Ec32 orthologEc-10_000510.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.0073862-CDS-M-pyrifera_M_contig88605:178..3791622816796.0073862-CDS-M-pyrifera_M_contig88605:178..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88605 179..379 +
1692278183.5486722-CDS-M-pyrifera_M_contig88605:178..3791692278183.5486722-CDS-M-pyrifera_M_contig88605:178..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88605 179..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88605.20564.1prot_M-pyrifera_M_contig88605.20564.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88605 179..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88605.20564.1

>prot_M-pyrifera_M_contig88605.20564.1 ID=prot_M-pyrifera_M_contig88605.20564.1|Name=mRNA_M-pyrifera_M_contig88605.20564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
NIPGSSPAQQNVLFTLGALPWSFKLVYGFISDNFPIGGKRRKPYFVIGWA
VYVLVNLYTATKEVPR*
back to top

mRNA from alignment at M-pyrifera_M_contig88605:179..379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88605.20564.1 ID=mRNA_M-pyrifera_M_contig88605.20564.1|Name=mRNA_M-pyrifera_M_contig88605.20564.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig88605:179..379+ (Macrocystis pyrifera P11B4 male)
AATATACCAGGGAGTTCACCAGCGCAGCAGAACGTCCTGTTCACTCTTGG GGCGCTGCCGTGGAGCTTCAAGCTGGTGTACGGTTTCATCTCGGACAATT TTCCCATCGGAGGCAAGCGAAGAAAGCCGTACTTCGTCATCGGCTGGGCG GTGTATGTCTTGGTCAACCTGTACACGGCCACGAAGGAAGTTCCGAGGTG A
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88605:179..379+

>mRNA_M-pyrifera_M_contig88605.20564.1 ID=mRNA_M-pyrifera_M_contig88605.20564.1|Name=mRNA_M-pyrifera_M_contig88605.20564.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig88605:179..379+ (Macrocystis pyrifera P11B4 male)
AATATACCAGGGAGTTCACCAGCGCAGCAGAACGTCCTGTTCACTCTTGG
GGCGCTGCCGTGGAGCTTCAAGCTGGTGTACGGTTTCATCTCGGACAATT
TTCCCATCGGAGGCAAGCGAAGAAAGCCGTACTTCGTCATCGGCTGGGCG
GTGTATGTCTTGGTCAACCTGTACACGGCCACGAAGGAAGTTCCGAGGTG
AAATATACCAGGGAGTTCACCAGCGCAGCAGAACGTCCTGTTCACTCTTG
GGGCGCTGCCGTGGAGCTTCAAGCTGGTGTACGGTTTCATCTCGGACAAT
TTTCCCATCGGAGGCAAGCGAAGAAAGCCGTACTTCGTCATCGGCTGGGC
GGTGTATGTCTTGGTCAACCTGTACACGGCCACGAAGGAAGTTCCGAGGT
GA
back to top