mRNA_M-pyrifera_M_contig88575.20562.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88575.20562.1
Unique NamemRNA_M-pyrifera_M_contig88575.20562.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88575.20562.1 vs. uniprot
Match: A0A3S3PJ55_9ACAR (Kinase n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PJ55_9ACAR)

HSP 1 Score: 62.0 bits (149), Expect = 4.130e-9
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   40 KYVLLQDLRAGLDARKVSVVDVKVGGTTWGPDASAEKALREGTKYMPGWELGFRLTGLRAWRRRTKEQVVRERAFGKSLS 279
            K++ + DL AG   +K SV+D+KVG  T+ P+A  +K  +E +KY     LGFR+ G+R +++ T E +V++  FGK+L+
Sbjct:  112 KFLAMDDLCAGY--QKPSVMDIKVGAITYDPEADKDKIEKEISKYPWAKTLGFRILGIRLYKKATDEYIVKDSYFGKTLT 189
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BLAST of mRNA_M-pyrifera_M_contig88575.20562.1 vs. uniprot
Match: A0A7R9LRS6_9ACAR (Kinase n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9LRS6_9ACAR)

HSP 1 Score: 54.7 bits (130), Expect = 1.500e-6
Identity = 28/79 (35.44%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:   43 YVLLQDLRAGLDARKVSVVDVKVGGTTWGPDASAEKALREGTKYMPGWELGFRLTGLRAWRRRTKEQVVRERAFGKSLS 279
            Y+ L+D+  G+ +   S++DVK+G  T+ P+A+  K   E  KY     LGFRL G+R ++ +  E +V+++ +G SL+
Sbjct:  106 YLRLEDMTNGMTSP--SILDVKIGPKTYDPEANERKIASESGKYRFAELLGFRLLGMRIYKSKDNEYIVKDKDYGISLT 182
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BLAST of mRNA_M-pyrifera_M_contig88575.20562.1 vs. uniprot
Match: A0A6M2CTN3_RHIMP (Kinase (Fragment) n=2 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CTN3_RHIMP)

HSP 1 Score: 51.2 bits (121), Expect = 2.310e-5
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   43 YVLLQDLRAGLDARKVSVVDVKVGGTTWGPDASAEKALREGTKYMPGWELGFRLTGLRAWRRRTKEQVVRERAFGKSLSVAEAPMAIV 306
            Y+ L D+    + R+  V+DVK+G  T+ P A  EK   E  KY  GW+LGFR+ G+R +    ++  V    +GK   + + P  I+
Sbjct:   96 YLRLDDVTR--EFRRPCVMDVKIGAQTYDPLAPPEKVALEEAKYRWGWQLGFRILGMRVFDHSEQKYHV----YGKDYGLKQTPDTIL 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88575.20562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3S3PJ55_9ACAR4.130e-940.00Kinase n=1 Tax=Dinothrombium tinctorium TaxID=1965... [more]
A0A7R9LRS6_9ACAR1.500e-635.44Kinase n=1 Tax=Oppiella nova TaxID=334625 RepID=A0... [more]
A0A6M2CTN3_RHIMP2.310e-534.09Kinase (Fragment) n=2 Tax=Rhipicephalus microplus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88575contigM-pyrifera_M_contig88575:19..327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.6165617-CDS-M-pyrifera_M_contig88575:18..3001622816795.6165617-CDS-M-pyrifera_M_contig88575:18..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88575 19..300 -
1692278183.2433274-CDS-M-pyrifera_M_contig88575:18..3001692278183.2433274-CDS-M-pyrifera_M_contig88575:18..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88575 19..300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.627619-UTR-M-pyrifera_M_contig88575:300..3271622816795.627619-UTR-M-pyrifera_M_contig88575:300..327Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88575 301..327 -
1692278183.2528267-UTR-M-pyrifera_M_contig88575:300..3271692278183.2528267-UTR-M-pyrifera_M_contig88575:300..327Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88575 301..327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88575.20562.1prot_M-pyrifera_M_contig88575.20562.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88575 19..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88575.20562.1

>prot_M-pyrifera_M_contig88575.20562.1 ID=prot_M-pyrifera_M_contig88575.20562.1|Name=mRNA_M-pyrifera_M_contig88575.20562.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MPRGKYVLLQDLRAGLDARKVSVVDVKVGGTTWGPDASAEKALREGTKYM
PGWELGFRLTGLRAWRRRTKEQVVRERAFGKSLSVAEAPMAIVR
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mRNA from alignment at M-pyrifera_M_contig88575:19..327-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88575.20562.1 ID=mRNA_M-pyrifera_M_contig88575.20562.1|Name=mRNA_M-pyrifera_M_contig88575.20562.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig88575:19..327- (Macrocystis pyrifera P11B4 male)
GTGAGGAAGCTTCGCAGCCGCGAGCAAATGCCGCGGGGCAAGTATGTGCT
GCTGCAGGACTTGAGAGCCGGACTCGACGCGCGCAAAGTAAGCGTGGTTG
ACGTCAAAGTGGGAGGCACAACGTGGGGACCGGACGCGAGCGCCGAAAAG
GCCCTGCGAGAAGGGACCAAGTATATGCCTGGCTGGGAGCTGGGCTTCCG
CTTGACTGGTTTGCGGGCGTGGAGGAGGCGAACGAAGGAGCAGGTCGTCC
GAGAAAGGGCGTTTGGAAAGAGCCTCTCTGTCGCTGAAGCACCCATGGCT
ATCGTGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88575:19..327-

>mRNA_M-pyrifera_M_contig88575.20562.1 ID=mRNA_M-pyrifera_M_contig88575.20562.1|Name=mRNA_M-pyrifera_M_contig88575.20562.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig88575:19..327- (Macrocystis pyrifera P11B4 male)
ATGCCGCGGGGCAAGTATGTGCTGCTGCAGGACTTGAGAGCCGGACTCGA
CGCGCGCAAAGTAAGCGTGGTTGACGTCAAAGTGGGAGGCACAACGTGGG
GACCGGACGCGAGCGCCGAAAAGGCCCTGCGAGAAGGGACCAAGTATATG
CCTGGCTGGGAGCTGGGCTTCCGCTTGACTGGTTTGCGGGCGTGGAGGAG
GCGAACGAAGGAGCAGGTCGTCCGAGAAAGGGCGTTTGGAAAGAGCCTCT
CTGTCGCTGAAGCACCCATGGCTATCGTGAGGATGCCGCGGGGCAAGTAT
GTGCTGCTGCAGGACTTGAGAGCCGGACTCGACGCGCGCAAAGTAAGCGT
GGTTGACGTCAAAGTGGGAGGCACAACGTGGGGACCGGACGCGAGCGCCG
AAAAGGCCCTGCGAGAAGGGACCAAGTATATGCCTGGCTGGGAGCTGGGC
TTCCGCTTGACTGGTTTGCGGGCGTGGAGGAGGCGAACGAAGGAGCAGGT
CGTCCGAGAAAGGGCGTTTGGAAAGAGCCTCTCTGTCGCTGAAGCACCCA
TGGCTATCGTGAGG
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