mRNA_M-pyrifera_M_contig88569.20561.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88569.20561.1
Unique NamemRNA_M-pyrifera_M_contig88569.20561.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: A0A813CAW2_9DINO (PH1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CAW2_9DINO)

HSP 1 Score: 104 bits (259), Expect = 1.390e-27
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIG 231
            WLKDWRRRY +LIG+QL  ++  +  PH  IDL  CLTVKSA +KTG++Y+FEVATP QTFF  + +  EKD+WIG
Sbjct:    2 WLKDWRRRYFKLIGNQLHFSKTPEEAPHGVIDLSSCLTVKSASDKTGKKYSFEVATPDQTFFMYADSEEEKDNWIG 77          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: A0A1V9ZLX5_9STRA (PH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLX5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.420e-27
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            WLK+WR RY  L G++L   R +   PH  IDL ECLTVKSA+EKT +R+ FEVATP  T++  + +  +KD+WIGAIG+AIV  SS
Sbjct:   22 WLKEWRTRYFVLKGNKLYFCRAQGEAPHGVIDLSECLTVKSAEEKTNKRFCFEVATPESTYYMHAESEKQKDEWIGAIGRAIVKFSS 108          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: A0A024G9C1_9STRA (PH domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024G9C1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.940e-27
Identity = 45/87 (51.72%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            W+K+WR+RY  L G++L  ++ +   PH  IDL +CLTVKSA++KT +RY FEVATP  T++  + N  +KD+WIGAIG+AIV +S+
Sbjct:   30 WMKEWRKRYFILKGNKLYFSKSKNDAPHGFIDLADCLTVKSAEDKTNKRYCFEVATPDTTYYMYAQNEEQKDEWIGAIGRAIVQVST 116          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: K3WT41_GLOUD (PH domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=K3WT41_GLOUD)

HSP 1 Score: 103 bits (258), Expect = 7.080e-27
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            WLK+WR+RY  L G++L   R +    H  IDL +CLTVKSA+EKT +R+ FEVATP  T++  + N  +KD+WIGAIG+AIV  SS
Sbjct:   25 WLKEWRKRYFVLKGNKLYFCRAQHEPAHGLIDLADCLTVKSAEEKTNKRFCFEVATPDSTYYMYAENEKQKDEWIGAIGRAIVKFSS 111          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: A0A7S1G9N2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9N2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.980e-27
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            +LK+WRRRY +L+G++L   + E  EPH  IDL ECLTVKSA+EKT +R++FEVATP  T++  +    +KD+WIG IG+AIV  SS
Sbjct:   75 YLKEWRRRYFKLVGNKLHFMKSETHEPHGTIDLRECLTVKSAEEKTDKRHSFEVATPDATYYMFADTEKDKDEWIGQIGRAIVRFSS 161          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: W4HBR5_9STRA (PH domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4HBR5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.790e-26
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            WLK+WR RY  L G++L   R +   PH  IDL ECLTVKSA+EKT +RY FEVATP  T++  + +  +K++WIGAIG+ IV  SS
Sbjct:   22 WLKEWRTRYFVLKGNKLYFCRVKGESPHGVIDLSECLTVKSAEEKTNKRYCFEVATPEATYYMHAESEKQKEEWIGAIGRTIVKFSS 108          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: A0A067CQ48_SAPPC (PH domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ48_SAPPC)

HSP 1 Score: 102 bits (254), Expect = 2.790e-26
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            WLK+WR RY  L G++L   R +   PH  IDL ECLTVKSA+EKT +R+ FE+ATP  T++  + +  +KD WIGAIG+AIV  SS
Sbjct:   22 WLKEWRARYFVLKGNKLYFCRAQGEAPHGVIDLSECLTVKSAEEKTNKRFCFEIATPESTYYMHAESEEKKDAWIGAIGRAIVKFSS 108          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: A0A835ZE28_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE28_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.340e-26
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            WLKDWRRR+  L G +L  A+ E A PH  IDL  C+TVKSA++KT +R A EV+T   TFF  +    EKDDWIGAIG+AIV  SS
Sbjct:   35 WLKDWRRRFFILKGSKLFFAKSEMAAPHGMIDLSSCMTVKSAEQKTHKRNALEVSTQDTTFFMFAGTEKEKDDWIGAIGRAIVQSSS 121          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: A0A5D6YP63_9STRA (PH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YP63_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.820e-26
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            WLK+WRRRY  L G++L   R  +   H  IDL +CLTVKSA+EKT +R+ FEVATP  T++  +     KD+WIGAIG+AIV  SS
Sbjct:   26 WLKEWRRRYFVLKGNKLYFCRAAREPAHGLIDLADCLTVKSAEEKTNKRFCFEVATPDSTYYMYADTEQHKDEWIGAIGRAIVKFSS 112          
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Match: A0A5A8C5J5_CAFRO (PH domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5J5_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 6.540e-26
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    4 WLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRRYAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS 264
            WL+DWRRR+  L GD L  ++ E +EPH  IDL  CLTVKSA +K GR++AFEVAT  + FF  + +  +KD+WIGAIG+AIV  ++
Sbjct:   23 WLRDWRRRFFELRGDTLSFSKGEGSEPHGTIDLKTCLTVKSAGDKCGRKHAFEVATAQRVFFMCADSEKDKDEWIGAIGRAIVRFAA 109          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88569.20561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813CAW2_9DINO1.390e-2760.53PH1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB... [more]
A0A1V9ZLX5_9STRA3.420e-2755.17PH domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A024G9C1_9STRA3.940e-2751.72PH domain-containing protein n=2 Tax=Albugo TaxID=... [more]
K3WT41_GLOUD7.080e-2754.02PH domain-containing protein n=23 Tax=Oomycota Tax... [more]
A0A7S1G9N2_9STRA8.980e-2755.17Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
W4HBR5_9STRA2.790e-2654.02PH domain-containing protein n=3 Tax=Aphanomyces T... [more]
A0A067CQ48_SAPPC2.790e-2654.02PH domain-containing protein n=2 Tax=Saprolegnia T... [more]
A0A835ZE28_9STRA3.340e-2657.47PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A5D6YP63_9STRA4.820e-2654.02PH domain-containing protein n=1 Tax=Pythium brass... [more]
A0A5A8C5J5_CAFRO6.540e-2654.02PH domain-containing protein n=2 Tax=Cafeteria roe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88569contigM-pyrifera_M_contig88569:126..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.7347
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.PH domain
EggNOG OGs29TN5@1,2RXGP@2759,3QFEP@4776
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.5736206-CDS-M-pyrifera_M_contig88569:125..2001622816795.5736206-CDS-M-pyrifera_M_contig88569:125..200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88569 126..200 +
1692278183.2210374-CDS-M-pyrifera_M_contig88569:125..2001692278183.2210374-CDS-M-pyrifera_M_contig88569:125..200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88569 126..200 +
1622816795.5857086-CDS-M-pyrifera_M_contig88569:370..5591622816795.5857086-CDS-M-pyrifera_M_contig88569:370..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88569 371..559 +
1692278183.233183-CDS-M-pyrifera_M_contig88569:370..5591692278183.233183-CDS-M-pyrifera_M_contig88569:370..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88569 371..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88569.20561.1prot_M-pyrifera_M_contig88569.20561.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88569 126..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88569.20561.1

>prot_M-pyrifera_M_contig88569.20561.1 ID=prot_M-pyrifera_M_contig88569.20561.1|Name=mRNA_M-pyrifera_M_contig88569.20561.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
QWLKDWRRRYVRLIGDQLLIARDEKAEPHDKIDLGECLTVKSADEKTGRR
YAFEVATPGQTFFFQSTNTSEKDDWIGAIGQAIVALSS
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mRNA from alignment at M-pyrifera_M_contig88569:126..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88569.20561.1 ID=mRNA_M-pyrifera_M_contig88569.20561.1|Name=mRNA_M-pyrifera_M_contig88569.20561.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=434bp|location=Sequence derived from alignment at M-pyrifera_M_contig88569:126..559+ (Macrocystis pyrifera P11B4 male)
CAATGGTTGAAAGATTGGAGACGCCGATACGTGCGTCTCATTGGAGACCA GCTCCTTATTGCAAGAGATGAAAAGGTATGGAAAGGTTGGAGGGGGGATT GGGGGTGATGGAGGGTGTATGTTGGTGGAAGGTAGTGTGTTGGATGGTGT GGGGTGGTGGAGGTGCTTCAAACATGCCCCTATCACCCGTTCCTGCCACT TCAAATCCCACACATTCCAATCTCGCGTCTTCCTATACCTTTCAGGCGGA ACCACATGACAAGATCGATTTGGGTGAATGTTTGACTGTGAAATCAGCGG ATGAGAAGACCGGGAGACGATATGCGTTCGAAGTAGCGACACCAGGCCAA ACTTTCTTCTTCCAGAGCACCAACACGAGTGAAAAGGATGATTGGATTGG GGCAATCGGACAAGCCATTGTGGCATTGTCCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88569:126..559+

>mRNA_M-pyrifera_M_contig88569.20561.1 ID=mRNA_M-pyrifera_M_contig88569.20561.1|Name=mRNA_M-pyrifera_M_contig88569.20561.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig88569:126..559+ (Macrocystis pyrifera P11B4 male)
CAATGGTTGAAAGATTGGAGACGCCGATACGTGCGTCTCATTGGAGACCA
GCTCCTTATTGCAAGAGATGAAAAGCAATGGTTGAAAGATTGGAGACGCC
GATACGTGCGTCTCATTGGAGACCAGCTCCTTATTGCAAGAGATGAAAAG
GCGGAACCACATGACAAGATCGATTTGGGTGAATGTTTGACTGTGAAATC
AGCGGATGAGAAGACCGGGAGACGATATGCGTTCGAAGTAGCGACACCAG
GCCAAACTTTCTTCTTCCAGAGCACCAACACGAGTGAAAAGGATGATTGG
ATTGGGGCAATCGGACAAGCCATTGTGGCATTGTCCTCCGCGGAACCACA
TGACAAGATCGATTTGGGTGAATGTTTGACTGTGAAATCAGCGGATGAGA
AGACCGGGAGACGATATGCGTTCGAAGTAGCGACACCAGGCCAAACTTTC
TTCTTCCAGAGCACCAACACGAGTGAAAAGGATGATTGGATTGGGGCAAT
CGGACAAGCCATTGTGGCATTGTCCTCC
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