mRNA_M-pyrifera_M_contig88564.20560.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88564.20560.1
Unique NamemRNA_M-pyrifera_M_contig88564.20560.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: A0A3F2S3G0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3G0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.430e-24
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:   13 LAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            L   W +WEQ     E  +   YG  L ++  F TVEEFWG W+++P  S VL D    K  A R    +++F++G+VPEWED +N  GGE  +RK     +LD +W+ LVL
Sbjct:    8 LNEAWSIWEQ----REQGKNMSYGDKLFKLCTFSTVEEFWGYWNNIPSPSQVLFDGFTRKKFADRTVEGFAVFKDGIVPEWEDPENKSGGEWSIRKDVPAQELDEFWEKLVL 115
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: G4YR44_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YR44_PHYSP)

HSP 1 Score: 102 bits (254), Expect = 1.150e-23
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:   13 LAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            L   W +WEQ     E  +   YG  L ++  F TVEEFWG W+++P  S VL D    K  A R    +++F+EG+VPEWED +N  GGE  +RK     +LD +W+ LVL
Sbjct:   11 LNEPWAIWEQ----REQGKNMSYGDKLFKLCTFSTVEEFWGYWNNIPSPSQVLFDGFTRKKFADRTVEGFAVFKEGIVPEWEDPENKNGGEWSIRKEVGAQELDEFWEKLVL 118
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: D0MWP7_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MWP7_PHYIT)

HSP 1 Score: 100 bits (250), Expect = 1.760e-23
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:   13 LAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            L   W +WEQ     E  +   YG  L ++  F TVEEFWG W+++P  S VL D    K  A R    +++F++G+VPEWED +N  GGE  +RK     +LD +W+ LVL
Sbjct:   11 LNEPWAVWEQ----REQGKNMSYGDKLFKLCTFSTVEEFWGYWNNIPSPSQVLFDGFTHKKFADRTVEGFAVFKDGIVPEWEDPENKNGGEWSIRKEVGAQELDEFWEKLVL 118
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: A0A7S0HHF8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHF8_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 1.410e-22
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:   13 LAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            L   WV+WE       D     Y  ++ ++  F T+E+FW LW+++P  S +  D   +K    R   S+SLF++GV PEWED  N  G E F RK F   QLD +WQ LVL
Sbjct:   64 LESEWVMWEHRA---PDKNSKSYEDNMAKLCEFATIEDFWRLWNNIPKPSAIFYDGRTKKKFKDRTVESFSLFKKGVKPEWEDAANRTGAEWFCRKTFPMPQLDSFWQDLVL 172
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: A0A0W8B524_PHYNI (Methylglutaconyl-CoA hydratase n=5 Tax=Phytophthora TaxID=4783 RepID=A0A0W8B524_PHYNI)

HSP 1 Score: 99.8 bits (247), Expect = 4.430e-22
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   13 LAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            L   W +WEQ     E  +   YG  L ++  F TVEEFWG W+++P  S VL D    K  A R    +++F+E +VPEWED +N  GGE  +RK     +LD +W+ LVL
Sbjct:  378 LNEPWAIWEQ----REQGKNMSYGDKLFKLCTFSTVEEFWGYWNNIPSPSQVLFDGFTRKKFADRTVEGFAVFKEDIVPEWEDPENKNGGEWSIRKEVGAQELDEFWEKLVL 485
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: A0A3M6VGP3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGP3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.880e-22
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:   13 LAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            L   W +WEQ     E  +   Y   L ++  F TVEEFWG W+++P  S  L D    K  A R    +++F++G+VPEWED +N  GGE  +RK     +LD +W+ LVL
Sbjct:    9 LNEPWAIWEQ----REQGKNMSYADKLFKLCTFSTVEEFWGYWNNIPSPSQALFDGFTRKKFADRTVEGFAVFKDGIVPEWEDPENKNGGEWSIRKEVGAEELDEFWEKLVL 116
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: H3GM50_PHYRM (Uncharacterized protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=H3GM50_PHYRM)

HSP 1 Score: 91.3 bits (225), Expect = 2.090e-20
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 1 
Query:   13 LAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKA---------------------FSPSQLDGYWQSLVL 348
            L   W +WEQ     E  +   YG  L ++  F TVEEFWG W+++P  S VL D    K  A R    +++F+EG+VPEWED +N  GGE  +RK                          +LD +W+ LVL
Sbjct:   11 LNEPWAIWEQ----REQGKNMSYGDKLFKLCSFSTVEEFWGYWNNIPSPSQVLFDGFTRKKFADRTVEGFAVFKEGIVPEWEDPENKNGGEWSIRKGALVLFTCGEAVDSFVSLQLPEVGAQELDAFWEKLVL 139
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: A0A2D4BQU2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQU2_PYTIN)

HSP 1 Score: 90.9 bits (224), Expect = 2.130e-20
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:   13 LAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSD-HAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            L   W +WE  + D +  +   +  +L ++  F TVEEFWG W+++P VS VL D    +KF   R   S ++F++GV+PEWED  N  GGE  VRK  +   LD  W+ LVL
Sbjct:   17 LQSGWSIWE--IRDKQ--KNMAWSDALSKLCTFHTVEEFWGYWNNIPKVSQVLFDGXTRKKFADGRTVESXAIFKDGVMPEWEDPANKHGGEWSVRKELNADALDECWERLVL 125
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: A0A7S2CL47_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CL47_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.210e-20
Identity = 48/118 (40.68%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:   10 SLAHRWVLWEQCVGDGEDTRGAGYGSSLCR-VARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVAR----RACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            +L H W  WEQ   DG+    A    +L R +  F TVE+FW  + HLP  S V  D    K V      R   S+SLF++G+  EWED  N++GGE ++RK+     LD YW +LVL
Sbjct:   11 ALEHTWCFWEQNAPDGKKQLSAQEWKNLQRNLGAFNTVEDFWKCYSHLPAPSAVFYDGKSRKRVGPPGDDRVIESFSLFKQGIEVEWEDPANIRGGEWWIRKSLKTDVLDRYWNNLVL 128
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BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Match: A0A7S3KXX1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXX1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.420e-20
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1 
Query:   10 SLAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHLPPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRKAFSPSQLDGYWQSLVL 348
            SL + WVLWE      ++     +  ++  +A F TVE+FW  ++H+P  S V  D    K V  +    +SLF++G+ PEW D  N +GGE F R+ F    LD YWQ+LVL
Sbjct:   18 SLQNDWVLWEHKQSGSKNPNQ--WKENMSEIAHFNTVEDFWRYFNHIPSPSEVFFDGECRKKVGGKVVEEFSLFKKGIEPEWGDPMNAQGGEWFCRQYFDADVLDLYWQNLVL 128
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88564.20560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3F2S3G0_9STRA4.430e-2441.07Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
G4YR44_PHYSP1.150e-2341.96Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0MWP7_PHYIT1.760e-2341.07Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A7S0HHF8_9EUKA1.410e-2240.18Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A0W8B524_PHYNI4.430e-2241.07Methylglutaconyl-CoA hydratase n=5 Tax=Phytophthor... [more]
A0A3M6VGP3_9STRA9.880e-2239.29Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
H3GM50_PHYRM2.090e-2035.34Uncharacterized protein n=16 Tax=Peronosporaceae T... [more]
A0A2D4BQU2_PYTIN2.130e-2040.71Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2CL47_9STRA3.210e-2040.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3KXX1_9STRA4.420e-2038.94Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88564contigM-pyrifera_M_contig88564:396..818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog4792.ETI34250
KEGG rclassRC00005,RC00059
KEGG koko:K03259,ko:K03715,ko:K07521
KEGG ReactionR02691
KEGG Pathwayko00561,ko01100,ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04360,ko04910,map00561,map01100,map01521,map03013,map04066,map04150,map04151,map04211,map04360,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000278,GO:0000339,GO:0000340,GO:0000932,GO:0001662,GO:0002209,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0007049,GO:0007275,GO:0007346,GO:0007399,GO:0007610,GO:0008134,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009410,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010721,GO:0014070,GO:0016281,GO:0016442,GO:0017148,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0022008,GO:0022402,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031332,GO:0031369,GO:0031370,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033391,GO:0033555,GO:0033993,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0042596,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045787,GO:0045931,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051384,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0070491,GO:0070887,GO:0071310,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0080090,GO:0097159,GO:0097327,GO:0098727,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903047,GO:1990904,GO:2000026,GO:2000112,GO:2000113
EggNOG free text desc.Eukaryotic initiation factor 4E
EggNOG OGs3QF99@4776,COG5053@1,KOG1670@2759
EC2.4.1.46
COG Functional cat.J
CAZyGT28
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03012,ko03019,ko04516
Exons2
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.5185618-CDS-M-pyrifera_M_contig88564:395..6051622816795.5185618-CDS-M-pyrifera_M_contig88564:395..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88564 396..605 +
1692278183.1974938-CDS-M-pyrifera_M_contig88564:395..6051692278183.1974938-CDS-M-pyrifera_M_contig88564:395..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88564 396..605 +
1622816795.53449-CDS-M-pyrifera_M_contig88564:680..8181622816795.53449-CDS-M-pyrifera_M_contig88564:680..818Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88564 681..818 +
1692278183.2096946-CDS-M-pyrifera_M_contig88564:680..8181692278183.2096946-CDS-M-pyrifera_M_contig88564:680..818Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88564 681..818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88564.20560.1prot_M-pyrifera_M_contig88564.20560.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88564 396..818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88564.20560.1

>prot_M-pyrifera_M_contig88564.20560.1 ID=prot_M-pyrifera_M_contig88564.20560.1|Name=mRNA_M-pyrifera_M_contig88564.20560.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MATSLAHRWVLWEQCVGDGEDTRGAGYGSSLCRVARFETVEEFWGLWHHL
PPVSMVLSDHAWEKFVARRACCSWSLFREGVVPEWEDEKNMKGGELFVRK
AFSPSQLDGYWQSLVL
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mRNA from alignment at M-pyrifera_M_contig88564:396..818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88564.20560.1 ID=mRNA_M-pyrifera_M_contig88564.20560.1|Name=mRNA_M-pyrifera_M_contig88564.20560.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig88564:396..818+ (Macrocystis pyrifera P11B4 male)
ATGGCAACATCCCTTGCACATCGGTGGGTGCTGTGGGAACAATGTGTTGG
GGATGGGGAAGATACACGTGGGGCCGGGTATGGGAGTAGTTTGTGTCGTG
TTGCTCGTTTTGAAACTGTGGAGGAGTTTTGGGGACTGTGGCATCACTTG
CCTCCTGTGAGTATGGTGTTGTCGGATCATGCCTGGGAAAAGTTTGTGGC
AAGGAGAGCTGTGGAAGGTGATATAGGTGAGGTGCCAATTCCATGGCTTG
GAGATGCGTCGTTGCGTGGGTATCGTGTTGACAAGTGTTGTTCGTGGTCA
TTGTTTCGAGAAGGGGTAGTTCCTGAGTGGGAAGATGAGAAGAACATGAA
AGGAGGGGAGTTGTTTGTGAGGAAAGCATTTTCTCCATCCCAATTGGATG
GATATTGGCAGAGCTTGGTGTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88564:396..818+

>mRNA_M-pyrifera_M_contig88564.20560.1 ID=mRNA_M-pyrifera_M_contig88564.20560.1|Name=mRNA_M-pyrifera_M_contig88564.20560.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig88564:396..818+ (Macrocystis pyrifera P11B4 male)
ATGGCAACATCCCTTGCACATCGGTGGGTGCTGTGGGAACAATGTGTTGG
GGATGGGGAAGATACACGTGGGGCCGGGTATGGGAGTAGTTTGTGTCGTG
TTGCTCGTTTTGAAACTGTGGAGGAGTTTTGGGGACTGTGGCATCACTTG
CCTCCTGTGAGTATGGTGTTGTCGGATCATGCCTGGGAAAAGTTTGTGGC
AAGGAGAGCTATGGCAACATCCCTTGCACATCGGTGGGTGCTGTGGGAAC
AATGTGTTGGGGATGGGGAAGATACACGTGGGGCCGGGTATGGGAGTAGT
TTGTGTCGTGTTGCTCGTTTTGAAACTGTGGAGGAGTTTTGGGGACTGTG
GCATCACTTGCCTCCTGTGAGTATGGTGTTGTCGGATCATGCCTGGGAAA
AGTTTGTGGCAAGGAGAGCTTGTTGTTCGTGGTCATTGTTTCGAGAAGGG
GTAGTTCCTGAGTGGGAAGATGAGAAGAACATGAAAGGAGGGGAGTTGTT
TGTGAGGAAAGCATTTTCTCCATCCCAATTGGATGGATATTGGCAGAGCT
TGGTGTTATGTTGTTCGTGGTCATTGTTTCGAGAAGGGGTAGTTCCTGAG
TGGGAAGATGAGAAGAACATGAAAGGAGGGGAGTTGTTTGTGAGGAAAGC
ATTTTCTCCATCCCAATTGGATGGATATTGGCAGAGCTTGGTGTTA
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