mRNA_M-pyrifera_M_contig88542.20556.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88542.20556.1
Unique NamemRNA_M-pyrifera_M_contig88542.20556.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A2D6MP92_9DELT (Formyl-CoA transferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6MP92_9DELT)

HSP 1 Score: 379 bits (973), Expect = 4.270e-129
Identity = 186/243 (76.54%), Postives = 213/243 (87.65%), Query Frame = 1 
Query:    1 PLPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEP--PGSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAAW 723
            PLPL+DLVVLDL++ARAGPTAVRQLADWGADVIRIEP  P        TPDYLN+HRNKRSLALDLK E GRA+LHRLV QAD+L+ENMRP VKF+LGFDW+TLS INPRLVM SISGFGQ+GPYA RGGVDQIAQG+ GMMSVTG+PGQGP+RAG A+SD+ AG+QLA+G++VAIHER RTG GR+VHTSLLESMIG+LDFQAAR+TV  E PPQ+GN HPT+ PMG+Y T DG++NVAA W
Sbjct:    6 PLPLSDLVVLDLSIARAGPTAVRQLADWGADVIRIEPRTPEVTGGGHHTPDYLNIHRNKRSLALDLKREEGRALLHRLVAQADVLVENMRPPVKFRLGFDWETLSEINPRLVMASISGFGQTGPYASRGGVDQIAQGLGGMMSVTGIPGQGPMRAGVAISDVTAGLQLAVGILVAIHERERTGRGRYVHTSLLESMIGMLDFQAARFTVAGETPPQAGNHHPTMGPMGMYETRDGNMNVAAPW 248
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BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A2E3NK41_9DELT (Formyl-CoA transferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E3NK41_9DELT)

HSP 1 Score: 375 bits (963), Expect = 1.410e-127
Identity = 184/243 (75.72%), Postives = 215/243 (88.48%), Query Frame = 1 
Query:    1 PLPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEP--PGSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAAW 723
            PLPLA LVV+DLT+ARAGPTAVRQLADWGADV+ +EP  P    A +  PDYLNL+RNKRSL+LDLK E+GRAILHRL+ +AD+L+ENMRP VK KLGFDWDT+SAINPRLVMGSISGFGQ GPYA+RGGVDQIAQG+ GMMSVTGLPGQGPVRAG A+SD+ AG+QLA+G++VA+HER RTG GR+VHTSLLESMI ++DFQAARYTV  EVPPQ+GN HPT+ PMG+Y TADG++N+AA W
Sbjct:    6 PLPLAGLVVIDLTIARAGPTAVRQLADWGADVVCVEPRSPEDTSAGRHGPDYLNLNRNKRSLSLDLKQEAGRAILHRLIAKADVLVENMRPNVKRKLGFDWDTVSAINPRLVMGSISGFGQDGPYAERGGVDQIAQGLGGMMSVTGLPGQGPVRAGVAISDVTAGLQLAVGLLVALHERERTGRGRYVHTSLLESMIAMMDFQAARYTVAKEVPPQAGNHHPTMGPMGMYQTADGYMNLAAPW 248
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BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A2E5YGK3_9DELT (Formyl-CoA transferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E5YGK3_9DELT)

HSP 1 Score: 369 bits (948), Expect = 2.750e-125
Identity = 184/243 (75.72%), Postives = 213/243 (87.65%), Query Frame = 1 
Query:    1 PLPLADLVVLDLTVARAGPTAVRQLADWGADVIRIE--PPGSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAAW 723
            PLPL+DL+VLDLT+ARAGPTAVRQLADWGA+VI IE        A + +PD LNL+RNKRSL LDLK + GRA+LHR+V +ADIL+ENMRP VK KLGFDWDTLSAINPRLVMGSISGFGQ GPYA+RGGVDQIAQG+ GMMSVTG+PGQGPVRAG A+SD+ AG+QLA+G++VAIHERARTG GR VHTSLLESMIG+LDFQAAR+TV  E+PPQ+GN HPT+ PMG+Y TADGH+N+AA W
Sbjct:    7 PLPLSDLLVLDLTIARAGPTAVRQLADWGANVIHIERRQTDELGALRHSPDSLNLNRNKRSLTLDLKRQEGRALLHRMVERADILVENMRPPVKSKLGFDWDTLSAINPRLVMGSISGFGQDGPYAERGGVDQIAQGLGGMMSVTGIPGQGPVRAGVAISDVTAGLQLAVGLLVAIHERARTGRGRHVHTSLLESMIGMLDFQAARWTVAREIPPQAGNHHPTMGPMGMYETADGHINLAAPW 249
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BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A2E1WJK2_9ACTN (Formyl-CoA transferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WJK2_9ACTN)

HSP 1 Score: 362 bits (929), Expect = 2.180e-122
Identity = 170/241 (70.54%), Postives = 209/241 (86.72%), Query Frame = 1 
Query:    4 LPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEPP--GSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAA 720
            +PL+D+ V+DLT+ARAGPTAVRQLADWGADV+R+E P  G      T+PDYLNLHRNKRS+ +DLK + GR +LHR+V  AD+++ENMR +VK+KLGFD++TLS +NPR+++GSISGFGQSGPY  RGGVDQIAQGM GMMS+TGLPGQGPVRAG A+SD+ AG+QLAIG++ A+HER  TG GRWVHTSLLESMIG+LDFQAAR+TV +  PPQ+GNDHPT+ PMG+Y TADGHLN+AA+
Sbjct:    5 MPLSDITVIDLTIARAGPTAVRQLADWGADVVRVESPDGGFEAGGHTSPDYLNLHRNKRSIVIDLKADEGRKVLHRMVKSADVVVENMRTSVKYKLGFDYETLSNLNPRIILGSISGFGQSGPYRQRGGVDQIAQGMGGMMSITGLPGQGPVRAGVAISDVTAGLQLAIGILTALHERHTTGKGRWVHTSLLESMIGMLDFQAARWTVSNHSPPQAGNDHPTMGPMGMYKTADGHLNLAAS 245
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BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A2E9XAY5_9ACTN (Formyl-CoA transferase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XAY5_9ACTN)

HSP 1 Score: 357 bits (915), Expect = 3.090e-120
Identity = 173/241 (71.78%), Postives = 207/241 (85.89%), Query Frame = 1 
Query:    4 LPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEPPGSAVAA--QTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAA 720
            LPL D+ VLDL++ARAGPTAVRQLADWGA+V+RIE PG    A  Q++PDYLNLHRNKRS+ +DLK  +GR + H +V Q+D++IENMR  VK KLGFD+ TL  INP++++GSISGFGQ+GPYADRGGVDQIAQGMSGMM VTGLP  GPVRAG A+SD+ AG+QLAIG+MVA+HER +TG GRWVHTSLLESMIG+LDFQAAR+TVD + PPQSGNDHPTL PMG+Y T DGH+N+AA+
Sbjct:    5 LPLDDITVLDLSIARAGPTAVRQLADWGANVVRIESPGGGFEAGGQSSPDYLNLHRNKRSICIDLKNANGRDLFHAMVSQSDVVIENMRTPVKHKLGFDYKTLKKINPKIILGSISGFGQTGPYADRGGVDQIAQGMSGMMRVTGLPEHGPVRAGVAISDVTAGLQLAIGIMVALHERQKTGLGRWVHTSLLESMIGMLDFQAARWTVDGDDPPQSGNDHPTLGPMGMYRTLDGHINLAAS 245
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BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A2E6ZD53_9ACTN (Formyl-CoA transferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6ZD53_9ACTN)

HSP 1 Score: 353 bits (905), Expect = 9.840e-119
Identity = 168/242 (69.42%), Postives = 208/242 (85.95%), Query Frame = 1 
Query:    1 PLPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEPP--GSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAA 720
            PLPL D+ V+DLT+ARAGPTAVRQLADWGA+V+R+E P  G     +++PDYLNLHRNKRS+ +DLK   GR+ LHR+V  AD+++ENMR AVK KLGFD++TL+ +NP +++GSISGFGQ GPY  RGGVDQIAQGM GMMSVTGLPGQGPVRAG A+SD+ AG+QLAIG++VA+HER +TG GRWVHTSLLESMIG+LDFQAAR+TV+ + PPQ+GNDHPT+ PMG+Y TADG +N+AA+
Sbjct:    4 PLPLNDVTVIDLTIARAGPTAVRQLADWGANVVRVESPEGGFEAGGRSSPDYLNLHRNKRSVVIDLKHPEGRSTLHRMVQSADVVVENMRSAVKHKLGFDFETLAGVNPSVILGSISGFGQDGPYGHRGGVDQIAQGMGGMMSVTGLPGQGPVRAGVAISDVTAGLQLAIGILVALHERQKTGKGRWVHTSLLESMIGMLDFQAARWTVERDNPPQAGNDHPTMGPMGMYATADGFINIAAS 245
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BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A2E6FBD9_9ACTN (Formyl-CoA transferase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6FBD9_9ACTN)

HSP 1 Score: 351 bits (901), Expect = 3.980e-118
Identity = 165/241 (68.46%), Postives = 207/241 (85.89%), Query Frame = 1 
Query:    4 LPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEPP--GSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAA 720
            LPL+D+ V+DLT+ARAGPTAVRQL DWGADV+R+E P  G     +T+PDYLNLHRNKRS+ +DLK   G+A+LHR+V  AD+++ENMR  VK KLGFD++TL+ +NPR+++GSISGFGQ GPY+ RGGVDQIAQGM GMMS+TGLPGQGPVRAG A+SD+ AG+QLA+G++ A+HER  TG GRWVHTSLLESMIG+LDFQAAR+TV+++ PPQ+GN HPT+ PMG+Y T DGHLN+AA+
Sbjct:    5 LPLSDVTVIDLTIARAGPTAVRQLGDWGADVVRVESPEGGFEAGGRTSPDYLNLHRNKRSIVIDLKDPDGQAVLHRMVKSADVVVENMRTPVKHKLGFDYETLANLNPRIILGSISGFGQDGPYSRRGGVDQIAQGMGGMMSITGLPGQGPVRAGVAISDVTAGLQLAVGILTALHERHTTGKGRWVHTSLLESMIGMLDFQAARWTVENDDPPQAGNHHPTMGPMGMYKTLDGHLNLAAS 245
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BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A6G2JEA1_9ACTN (CoA transferase n=3 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6G2JEA1_9ACTN)

HSP 1 Score: 352 bits (902), Expect = 4.150e-118
Identity = 173/240 (72.08%), Postives = 204/240 (85.00%), Query Frame = 1 
Query:    4 LPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEPP--GSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAA 717
            LPLA +VVLDLT+ARAGPTAVRQLADWGADVIR++ P  G     +T+PD+LN+HRNKRS+ +DLK  SG  +LHRLV  AD+LIEN+RP VK++LGFDW+TL  +NP LVMGSISGFGQ GPYA RGGVDQIAQG+ GMM+VTGLPG GPVRAG A+SD+ AG+QLAIGV+VA+ ER+RTG GRWVHTSLLESMIG+LDFQAAR+TV  E PPQ+GNDHPT+ PMG Y  ADG +N+AA
Sbjct:   21 LPLAGIVVLDLTIARAGPTAVRQLADWGADVIRVDAPIDGFEEGRETSPDHLNIHRNKRSVVIDLKHPSGHELLHRLVRSADVLIENLRPTVKYRLGFDWETLHDVNPALVMGSISGFGQDGPYATRGGVDQIAQGLGGMMAVTGLPGHGPVRAGVAISDVTAGLQLAIGVLVALIERSRTGEGRWVHTSLLESMIGMLDFQAARWTVAGEDPPQAGNDHPTMIPMGTYEAADGRINIAA 260
[Close]
BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A7C7XQ48_9ACTN (CoA transferase n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7C7XQ48_9ACTN)

HSP 1 Score: 349 bits (895), Expect = 3.230e-117
Identity = 165/242 (68.18%), Postives = 207/242 (85.54%), Query Frame = 1 
Query:    1 PLPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEPP--GSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAA 720
            P+PL+D+ V+DLT+ARAGPTAVRQLADWGADV+R+E P  G     +T+PDYLNLHRNKRS+ +DLK   G+A+LHR+V  AD+++ENMR  VK KLGFD+ TL+ INP +++GSISGFGQ+GPY+ RGGVDQIAQGM G+M++TGLPGQGPVRAG A+SD+ AG+QLAIG++ A+HER RTG GRWVHTSLLESMI +LDFQAAR+TV  + PPQ+GNDHPT+ PMG+Y T DG+LN+AA+
Sbjct:    4 PMPLSDITVIDLTIARAGPTAVRQLADWGADVVRVESPEGGFEAGGRTSPDYLNLHRNKRSIVIDLKNPDGQAVLHRMVKSADVVVENMRTPVKHKLGFDYQTLADINPGIILGSISGFGQNGPYSRRGGVDQIAQGMGGLMAITGLPGQGPVRAGVAISDVTAGLQLAIGILTALHERHRTGKGRWVHTSLLESMISMLDFQAARWTVASDDPPQAGNDHPTMGPMGMYKTMDGYLNLAAS 245
[Close]
BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Match: A0A2E7T822_9ACTN (Formyl-CoA transferase n=5 Tax=Actinobacteria TaxID=201174 RepID=A0A2E7T822_9ACTN)

HSP 1 Score: 348 bits (894), Expect = 4.020e-117
Identity = 167/241 (69.29%), Postives = 205/241 (85.06%), Query Frame = 1 
Query:    4 LPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEPP--GSAVAAQTTPDYLNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWDTLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGPVRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDFQAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAA 720
            +PL+D+ V+DLT+ARAGPTAVRQLADWGA+V+R+E P  G     +++PDYLNLHRNKRSL +DLK   G+A LHR+V  AD+L+ENMR AVK+KLGFD+++LS +NPR+V+GSISGFGQ GPY  RGGVDQIAQG+ GMMSVTGLP  GPVRAG A+SD+ AG+QLAIG++ A+HER RTG GRWVHTSLLESM+G+LDFQAAR+TV  E PPQ GNDHPTL PMG+Y T DG++N+AA+
Sbjct:    1 MPLSDVTVIDLTIARAGPTAVRQLADWGANVVRVESPEGGFEAGGRSSPDYLNLHRNKRSLVIDLKHPEGQATLHRMVESADVLVENMRSAVKYKLGFDFESLSKVNPRIVLGSISGFGQDGPYGQRGGVDQIAQGLGGMMSVTGLPDHGPVRAGVAISDITAGLQLAIGILTALHERQRTGKGRWVHTSLLESMVGMLDFQAARWTVAGENPPQEGNDHPTLGPMGMYKTRDGYINLAAS 241
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88542.20556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6MP92_9DELT4.270e-12976.54Formyl-CoA transferase n=1 Tax=Deltaproteobacteria... [more]
A0A2E3NK41_9DELT1.410e-12775.72Formyl-CoA transferase n=1 Tax=Deltaproteobacteria... [more]
A0A2E5YGK3_9DELT2.750e-12575.72Formyl-CoA transferase n=1 Tax=Deltaproteobacteria... [more]
A0A2E1WJK2_9ACTN2.180e-12270.54Formyl-CoA transferase n=1 Tax=Acidimicrobiaceae b... [more]
A0A2E9XAY5_9ACTN3.090e-12071.78Formyl-CoA transferase n=2 Tax=Actinobacteria TaxI... [more]
A0A2E6ZD53_9ACTN9.840e-11969.42Formyl-CoA transferase n=1 Tax=Acidimicrobiaceae b... [more]
A0A2E6FBD9_9ACTN3.980e-11868.46Formyl-CoA transferase n=2 Tax=Acidimicrobiaceae b... [more]
A0A6G2JEA1_9ACTN4.150e-11872.08CoA transferase n=3 Tax=Acidimicrobiales bacterium... [more]
A0A7C7XQ48_9ACTN3.230e-11768.18CoA transferase n=3 Tax=Acidimicrobiia TaxID=84992... [more]
A0A2E7T822_9ACTN4.020e-11769.29Formyl-CoA transferase n=5 Tax=Actinobacteria TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88542contigM-pyrifera_M_contig88542:96..818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score303.1
Seed ortholog evalue1.1e-79
Seed eggNOG ortholog1054213.HMPREF9946_00379
Hectar predicted targeting categoryother localisation
EggNOG free text desc.III protein, CoA-transferase family
EggNOG OGs1MU2K@1224,2JQKF@204441,2TR7Q@28211,COG1804@1,COG1804@2
COG Functional cat.C
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
Exons1
Model size723
Cds size723
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.3292973-CDS-M-pyrifera_M_contig88542:95..8181622816795.3292973-CDS-M-pyrifera_M_contig88542:95..818Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88542 96..818 +
1692278183.086888-CDS-M-pyrifera_M_contig88542:95..8181692278183.086888-CDS-M-pyrifera_M_contig88542:95..818Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88542 96..818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88542.20556.1prot_M-pyrifera_M_contig88542.20556.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88542 96..818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88542.20556.1

>prot_M-pyrifera_M_contig88542.20556.1 ID=prot_M-pyrifera_M_contig88542.20556.1|Name=mRNA_M-pyrifera_M_contig88542.20556.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=241bp
PLPLADLVVLDLTVARAGPTAVRQLADWGADVIRIEPPGSAVAAQTTPDY
LNLHRNKRSLALDLKTESGRAILHRLVGQADILIENMRPAVKFKLGFDWD
TLSAINPRLVMGSISGFGQSGPYADRGGVDQIAQGMSGMMSVTGLPGQGP
VRAGAAVSDMAAGMQLAIGVMVAIHERARTGAGRWVHTSLLESMIGVLDF
QAARYTVDHEVPPQSGNDHPTLRPMGLYHTADGHLNVAAAW
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mRNA from alignment at M-pyrifera_M_contig88542:96..818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88542.20556.1 ID=mRNA_M-pyrifera_M_contig88542.20556.1|Name=mRNA_M-pyrifera_M_contig88542.20556.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=723bp|location=Sequence derived from alignment at M-pyrifera_M_contig88542:96..818+ (Macrocystis pyrifera P11B4 male)
CCTCTCCCGCTCGCCGATCTCGTCGTGCTCGACCTCACCGTGGCCCGAGC
GGGCCCCACCGCCGTTCGCCAACTCGCCGACTGGGGTGCCGACGTCATCC
GGATCGAACCACCCGGTTCGGCCGTCGCAGCCCAGACGACGCCTGACTAC
CTCAACCTCCACCGCAACAAGCGAAGTCTCGCCCTCGACCTCAAAACCGA
GTCCGGCCGAGCGATCCTCCATCGTCTGGTCGGTCAGGCCGACATCCTGA
TCGAGAACATGCGGCCGGCGGTGAAGTTCAAGCTGGGGTTCGACTGGGAC
ACCCTCTCGGCCATCAACCCCCGCCTCGTGATGGGCTCGATCTCCGGCTT
CGGCCAGAGTGGGCCGTACGCCGACCGCGGTGGCGTCGACCAGATCGCTC
AGGGCATGTCCGGGATGATGAGCGTCACCGGTCTGCCTGGGCAAGGGCCG
GTTCGGGCGGGGGCTGCCGTCTCCGACATGGCGGCCGGCATGCAGCTCGC
CATCGGTGTGATGGTGGCGATCCACGAGCGAGCCCGAACCGGAGCGGGCC
GCTGGGTGCACACCTCGCTGCTCGAATCGATGATCGGGGTGCTCGACTTC
CAGGCCGCTCGCTACACCGTCGATCACGAGGTGCCCCCTCAGTCGGGCAA
CGACCACCCGACCCTGCGCCCCATGGGCCTCTACCACACCGCCGACGGTC
ATCTCAACGTCGCCGCCGCCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88542:96..818+

>mRNA_M-pyrifera_M_contig88542.20556.1 ID=mRNA_M-pyrifera_M_contig88542.20556.1|Name=mRNA_M-pyrifera_M_contig88542.20556.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1446bp|location=Sequence derived from alignment at M-pyrifera_M_contig88542:96..818+ (Macrocystis pyrifera P11B4 male)
CCTCTCCCGCTCGCCGATCTCGTCGTGCTCGACCTCACCGTGGCCCGAGC
GGGCCCCACCGCCGTTCGCCAACTCGCCGACTGGGGTGCCGACGTCATCC
GGATCGAACCACCCGGTTCGGCCGTCGCAGCCCAGACGACGCCTGACTAC
CTCAACCTCCACCGCAACAAGCGAAGTCTCGCCCTCGACCTCAAAACCGA
GTCCGGCCGAGCGATCCTCCATCGTCTGGTCGGTCAGGCCGACATCCTGA
TCGAGAACATGCGGCCGGCGGTGAAGTTCAAGCTGGGGTTCGACTGGGAC
ACCCTCTCGGCCATCAACCCCCGCCTCGTGATGGGCTCGATCTCCGGCTT
CGGCCAGAGTGGGCCGTACGCCGACCGCGGTGGCGTCGACCAGATCGCTC
AGGGCATGTCCGGGATGATGAGCGTCACCGGTCTGCCTGGGCAAGGGCCG
GTTCGGGCGGGGGCTGCCGTCTCCGACATGGCGGCCGGCATGCAGCTCGC
CATCGGTGTGATGGTGGCGATCCACGAGCGAGCCCGAACCGGAGCGGGCC
GCTGGGTGCACACCTCGCTGCTCGAATCGATGATCGGGGTGCTCGACTTC
CAGGCCGCTCGCTACACCGTCGATCACGAGGTGCCCCCTCAGTCGGGCAA
CGACCACCCGACCCTGCGCCCCATGGGCCTCTACCACACCGCCGACGGTC
ATCTCAACGTCGCCGCCGCCTGGCCTCTCCCGCTCGCCGATCTCGTCGTG
CTCGACCTCACCGTGGCCCGAGCGGGCCCCACCGCCGTTCGCCAACTCGC
CGACTGGGGTGCCGACGTCATCCGGATCGAACCACCCGGTTCGGCCGTCG
CAGCCCAGACGACGCCTGACTACCTCAACCTCCACCGCAACAAGCGAAGT
CTCGCCCTCGACCTCAAAACCGAGTCCGGCCGAGCGATCCTCCATCGTCT
GGTCGGTCAGGCCGACATCCTGATCGAGAACATGCGGCCGGCGGTGAAGT
TCAAGCTGGGGTTCGACTGGGACACCCTCTCGGCCATCAACCCCCGCCTC
GTGATGGGCTCGATCTCCGGCTTCGGCCAGAGTGGGCCGTACGCCGACCG
CGGTGGCGTCGACCAGATCGCTCAGGGCATGTCCGGGATGATGAGCGTCA
CCGGTCTGCCTGGGCAAGGGCCGGTTCGGGCGGGGGCTGCCGTCTCCGAC
ATGGCGGCCGGCATGCAGCTCGCCATCGGTGTGATGGTGGCGATCCACGA
GCGAGCCCGAACCGGAGCGGGCCGCTGGGTGCACACCTCGCTGCTCGAAT
CGATGATCGGGGTGCTCGACTTCCAGGCCGCTCGCTACACCGTCGATCAC
GAGGTGCCCCCTCAGTCGGGCAACGACCACCCGACCCTGCGCCCCATGGG
CCTCTACCACACCGCCGACGGTCATCTCAACGTCGCCGCCGCCTGG
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