mRNA_M-pyrifera_M_contig88540.20554.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88540.20554.1
Unique NamemRNA_M-pyrifera_M_contig88540.20554.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88540.20554.1 vs. uniprot
Match: D7FZ79_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ79_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.710e-14
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    4 RKYSKKPEGGGRGVTVTREGAIHVTNVNLVCPQTG 108
            RKYSKKPEGGGRG TVTRE AIHVTNVNLVCP+TG
Sbjct:   77 RKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETG 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88540.20554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ79_ECTSI1.710e-1491.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88540contigM-pyrifera_M_contig88540:168..278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog2880.D7FZ79
KEGG koko:K02895
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0198@1,KOG1708@2759
Ec32 ortholog descriptionRibosomal protein L24
Ec32 orthologEc-13_002770.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.2628539-CDS-M-pyrifera_M_contig88540:167..2781622816795.2628539-CDS-M-pyrifera_M_contig88540:167..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88540 168..278 -
1692278183.0551634-CDS-M-pyrifera_M_contig88540:167..2781692278183.0551634-CDS-M-pyrifera_M_contig88540:167..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88540 168..278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88540.20554.1prot_M-pyrifera_M_contig88540.20554.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88540 168..278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88540.20554.1

>prot_M-pyrifera_M_contig88540.20554.1 ID=prot_M-pyrifera_M_contig88540.20554.1|Name=mRNA_M-pyrifera_M_contig88540.20554.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
QRKYSKKPEGGGRGVTVTREGAIHVTNVNLVCPQTG*
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mRNA from alignment at M-pyrifera_M_contig88540:168..278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88540.20554.1 ID=mRNA_M-pyrifera_M_contig88540.20554.1|Name=mRNA_M-pyrifera_M_contig88540.20554.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=111bp|location=Sequence derived from alignment at M-pyrifera_M_contig88540:168..278- (Macrocystis pyrifera P11B4 male)
CAGCGCAAGTACAGCAAGAAGCCGGAGGGAGGTGGGCGCGGAGTAACGGT
GACTCGAGAGGGAGCGATACACGTCACCAACGTCAACCTGGTTTGCCCTC
AGACGGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88540:168..278-

>mRNA_M-pyrifera_M_contig88540.20554.1 ID=mRNA_M-pyrifera_M_contig88540.20554.1|Name=mRNA_M-pyrifera_M_contig88540.20554.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig88540:168..278- (Macrocystis pyrifera P11B4 male)
CAGCGCAAGTACAGCAAGAAGCCGGAGGGAGGTGGGCGCGGAGTAACGGT
GACTCGAGAGGGAGCGATACACGTCACCAACGTCAACCTGGTTTGCCCTC
AGACGGGGTGACAGCGCAAGTACAGCAAGAAGCCGGAGGGAGGTGGGCGC
GGAGTAACGGTGACTCGAGAGGGAGCGATACACGTCACCAACGTCAACCT
GGTTTGCCCTCAGACGGGGTGA
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