mRNA_M-pyrifera_M_contig88513.20550.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88513.20550.1
Unique NamemRNA_M-pyrifera_M_contig88513.20550.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.150e-21
Identity = 45/85 (52.94%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    4 GYDGGDCCECTCVST--SDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEICG 252
            G+DGGDCCECTCVS    D++C      GFACVDP+APCVDDDD+T+              +L C P  F D +CD  NNNEICG
Sbjct:    5 GFDGGDCCECTCVSVYDDDYSCSSTD-SGFACVDPTAPCVDDDDITI------------EQALNCFPREFGDGWCDQENNNEICG 76          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: D7G6I3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I3_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.090e-20
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 SGYDGGDCCECTCVSTSDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEICG 252
            +GYDGGDCCECTCVS  ++ CG    GG+AC+DP+A CV+DDDVT            F  +  C+     DAYCD  NN E CG
Sbjct:   29 AGYDGGDCCECTCVSEGEYECG---AGGYACIDPAAECVNDDDVT------------FQIASTCVADMIGDAYCDEPNNVEECG 97          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.020e-20
Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GYDGGDCCECTCVSTSDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEICG 252
            GYDGGDCCECTCV+  ++ CG    GG+AC+DP+A CV+DDDVT            F  +  C+     DAYCD  NN E CG
Sbjct:   62 GYDGGDCCECTCVAEGEYECG---AGGYACIDPAAECVNDDDVT------------FQIASSCVADMIGDAYCDEPNNVEECG 129          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.530e-17
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    4 GYDGGDCCECTCVSTSDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTD---FTTSLGCIPSFFSDAYCDSVNNNEIC 249
            GYDGGDCCECTCV  S FTCG   +GGFAC+DPSA CVDDD++T   ED + +  D   +  S+G       D +C   NNNE+C
Sbjct:   18 GYDGGDCCECTCVDAS-FTCG---YGGFACIDPSAACVDDDNIT---EDIAESCNDGGGYVASIG-------DGFCSDENNNEVC 88          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.340e-16
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 GYDGGDCCECTCVST----SDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEICG 252
            GYDGGDCCECTC +      ++ C  + +G FAC+DP APCVDDDD+T+              +  C+ S   + YCD  NNNEICG
Sbjct:   44 GYDGGDCCECTCQNPWGDDDEWFCSKDGYG-FACIDPDAPCVDDDDITI------------EIAQNCVTSDLGNGYCDEDNNNEICG 117          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.660e-15
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    4 GYDGGDCCECTCVS--TSDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEIC 249
            GYDGGDCCECTCV   +++F C +     FAC+DP+APCVDDDDVT                  C+  +  D YCD+ NN EIC
Sbjct:   77 GYDGGDCCECTCVVDWSAEFGCTE-----FACIDPTAPCVDDDDVTA------------DALENCMMEYLGDGYCDTYNNIEIC 143          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.190e-15
Identity = 41/87 (47.13%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    4 GYDGGDCCECTCVST----SDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEICG 252
            GYDGGDCCECTCV+      D+ C  +   GFAC+DP A CVDDDD+TV              +  C      D +CD  NNNEICG
Sbjct:   20 GYDGGDCCECTCVNPWGDDDDWVCS-KDGSGFACIDPDASCVDDDDITV------------EIAQNCDTWGLGDGWCDQDNNNEICG 93          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 5.510e-15
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    7 YDGGDCCECTCVSTSDFTCGDEQFGGFACVDPSAPCVDDDDVTV-IPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEIC 249
            YDGGDCCECTC  T +  CG  ++ GFAC+DP APCVDDD  TV + ++  Y            P    D +CD  NNNE+C
Sbjct:   10 YDGGDCCECTCEDTPNNKCG--RWSGFACIDPEAPCVDDDSFTVDMIDNCDY------------PGGIGDGWCDEDNNNELC 77          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.530e-14
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 SGYDGGDCCECTCVSTSDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEICG 252
            SGYDGGDCCECTC    D    D +   F+C+DP+APCV+DDD+TV          D   + G + S   D +CDS NN E CG
Sbjct:    8 SGYDGGDCCECTCEGDDD----DYKCMQFSCIDPNAPCVNDDDITV----------DMFDNCGYV-SGIGDGWCDSNNNKEACG 76          
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.700e-14
Identity = 41/88 (46.59%), Postives = 46/88 (52.27%), Query Frame = 1
Query:    7 YDGGDCCECTCVST------SDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPEDASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEICG 252
            YDGGDCCECTC  +      S   C    +GGFAC+DP APCVDDD VTV   D  YT                + YCD VNN+  CG
Sbjct:   71 YDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTVEMMDLCYT------------GQIGNGYCDDVNNSPECG 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88513.20550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S4_ECTSI4.150e-2152.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6I3_ECTSI1.090e-2050.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L262_9PHAE3.020e-2049.40LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KJK5_9PHAE1.530e-1752.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI1.340e-1645.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSR3_ECTSI2.660e-1547.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE4.190e-1547.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI5.510e-1547.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI2.530e-1447.62LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K4R2_9PHAE4.700e-1446.59LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88513contigM-pyrifera_M_contig88513:72..329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2e-07
Seed eggNOG ortholog2880.D7FX76
Hectar predicted targeting categoryother localisation
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.0082736-CDS-M-pyrifera_M_contig88513:71..3291622816795.0082736-CDS-M-pyrifera_M_contig88513:71..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88513 72..329 -
1692278182.8783183-CDS-M-pyrifera_M_contig88513:71..3291692278182.8783183-CDS-M-pyrifera_M_contig88513:71..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88513 72..329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88513.20550.1prot_M-pyrifera_M_contig88513.20550.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88513 72..329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88513.20550.1

>prot_M-pyrifera_M_contig88513.20550.1 ID=prot_M-pyrifera_M_contig88513.20550.1|Name=mRNA_M-pyrifera_M_contig88513.20550.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
SGYDGGDCCECTCVSTSDFTCGDEQFGGFACVDPSAPCVDDDDVTVIPED
ASYTYTDFTTSLGCIPSFFSDAYCDSVNNNEICGEW
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mRNA from alignment at M-pyrifera_M_contig88513:72..329-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88513.20550.1 ID=mRNA_M-pyrifera_M_contig88513.20550.1|Name=mRNA_M-pyrifera_M_contig88513.20550.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig88513:72..329- (Macrocystis pyrifera P11B4 male)
TCAGGTTACGACGGAGGCGATTGCTGCGAATGCACCTGCGTCAGCACCTC GGACTTCACTTGCGGGGATGAGCAGTTCGGCGGTTTCGCGTGCGTCGACC CCAGTGCTCCTTGCGTCGATGACGACGACGTCACTGTCATTCCGGAAGAT GCCTCCTATACATACACAGATTTTACCACAAGCTTAGGGTGCATTCCCTC CTTTTTCTCAGACGCATACTGCGACAGCGTCAACAACAACGAAATCTGCG GTGAGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88513:72..329-

>mRNA_M-pyrifera_M_contig88513.20550.1 ID=mRNA_M-pyrifera_M_contig88513.20550.1|Name=mRNA_M-pyrifera_M_contig88513.20550.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig88513:72..329- (Macrocystis pyrifera P11B4 male)
TCAGGTTACGACGGAGGCGATTGCTGCGAATGCACCTGCGTCAGCACCTC
GGACTTCACTTGCGGGGATGAGCAGTTCGGCGGTTTCGCGTGCGTCGACC
CCAGTGCTCCTTGCGTCGATGACGACGACGTCACTGTCATTCCGGAAGAT
GCCTCCTATACATACACAGATTTTACCACAAGCTTAGGGTGCATTCCCTC
CTTTTTCTCAGACGCATACTGCGACAGCGTCAACAACAACGAAATCTGCG
GTGAGTGGTCAGGTTACGACGGAGGCGATTGCTGCGAATGCACCTGCGTC
AGCACCTCGGACTTCACTTGCGGGGATGAGCAGTTCGGCGGTTTCGCGTG
CGTCGACCCCAGTGCTCCTTGCGTCGATGACGACGACGTCACTGTCATTC
CGGAAGATGCCTCCTATACATACACAGATTTTACCACAAGCTTAGGGTGC
ATTCCCTCCTTTTTCTCAGACGCATACTGCGACAGCGTCAACAACAACGA
AATCTGCGGTGAGTGG
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