mRNA_M-pyrifera_M_contig88499.20547.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88499.20547.1
Unique NamemRNA_M-pyrifera_M_contig88499.20547.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88499.20547.1 vs. uniprot
Match: A0A838SS64_9ACTN (Uncharacterized protein (Fragment) n=2 Tax=Euzebyales bacterium TaxID=2740540 RepID=A0A838SS64_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 1.890e-14
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  190 WRVMSPSPLDARAGSASVWTGDRWFIWGGHQAS----PVGVEYFADGALYDPETDRWQVIAPAPLGKSTLPDAVLVGGEIIVGGGS 435
            WR M+P+P+  RAG  +VWTGD+  +WGG + +    P G     DGA Y+P TDRW+ + PAP+G      AV  G E+++ GG+
Sbjct:   78 WRQMAPAPIGPRAGHVAVWTGDQLVVWGGREVTGRRLPRG-----DGAAYNPGTDRWRRLPPAPIGPRADAAAVWTGREVVIWGGA 158
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BLAST of mRNA_M-pyrifera_M_contig88499.20547.1 vs. uniprot
Match: A0A7Y5RQ44_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5RQ44_9PLAN)

HSP 1 Score: 60.1 bits (144), Expect = 5.950e-7
Identity = 39/94 (41.49%), Postives = 45/94 (47.87%), Query Frame = 1 
Query:  211 PLDARAGSASVWTGD--------RWFIWGGHQASPVGVEYFADGALYDPETDRWQVIAPAPLGKSTLPDAVLVGGEIIVGGG-STDTQESADAA 465
            PL AR    +VWTGD        +  IWGG         YFADGALYDP T  W +IA  PLG      AV  G  +IV  G   +T  S  A+
Sbjct:  870 PLAARMYHVAVWTGDTGNPATSNKMIIWGGASNLSSSNSYFADGALYDPATGVWTMIASGPLGGRHSASAVWDGERMIVWAGYGKETPSSTSAS 963
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BLAST of mRNA_M-pyrifera_M_contig88499.20547.1 vs. uniprot
Match: UPI001C62B7CD (hypothetical protein n=1 Tax=Cryobacterium sp. PAMC25264 TaxID=2861288 RepID=UPI001C62B7CD)

HSP 1 Score: 57.4 bits (137), Expect = 4.140e-6
Identity = 35/84 (41.67%), Postives = 41/84 (48.81%), Query Frame = 1 
Query:  190 WRVMSPSPLDARAGSASVWTGDRWFIWGGHQASPV--------GVEYFADGALYDPETDRWQVIAPAPLGKSTLPDAVLVGGEI 417
            W  +  SPL  R  S   W GDR+ I GG    P         G     DGA Y+P TD WQ IAPAPL  +    AV VGG++
Sbjct:  155 WGELPESPLSPRRDSLGAWVGDRFVIVGGRTDKPCPPAADCADGEPARQDGASYNPYTDMWQRIAPAPLPVNQYSSAV-VGGDL 237
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BLAST of mRNA_M-pyrifera_M_contig88499.20547.1 vs. uniprot
Match: A0A3N1CVV1_9ACTN (Uncharacterized protein n=1 Tax=Actinocorallia herbida TaxID=58109 RepID=A0A3N1CVV1_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 8.540e-6
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:  187 TWRVMSPSPLDARAGSASVWTGDRWFIWGG--HQASPVG------VEYFADGALYDPETDRWQVIAPAPL 372
            T RV+  +P+  R+ S +VWTG    +WGG   +    G      VE  ADGA YDP TDRW+V+  APL
Sbjct:   11 TVRVLPGAPVPGRSWSGAVWTGREMVVWGGVTEREETDGKKVRTVVEERADGAAYDPATDRWRVLPVAPL 80
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BLAST of mRNA_M-pyrifera_M_contig88499.20547.1 vs. uniprot
Match: A0A7V9T8E4_9ACTN (Galactose oxidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9T8E4_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 9.120e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  238 SVWTGDRWFIWGGHQASPVGVEYFADGALYDPETDRWQVIAPAPLG 375
            +VWTG    +WGG+         FADGA Y+PETDRW+V+A AP+G
Sbjct:    4 AVWTGREMIVWGGNDLVRPS---FADGAAYEPETDRWRVLAAAPIG 46
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BLAST of mRNA_M-pyrifera_M_contig88499.20547.1 vs. uniprot
Match: UPI001C667584 (hypothetical protein n=1 Tax=Actinoplanes hulinensis TaxID=1144547 RepID=UPI001C667584)

HSP 1 Score: 53.5 bits (127), Expect = 7.220e-5
Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:  190 WRVMSPSPLDARAGSASVWTGDRWFIWGGHQASP-------VGVEY-FADGALYDPETDRWQVIAPAPLGKSTLPDAVLVGGEIIV 423
            W  +  SPL  R     +WTG    + GG  ASP       VG     ADGA +DP TDRW+ IA +P+   T  ++ +VGG + V
Sbjct:   38 WTALPKSPLSPREAVLGLWTGREVLLIGGSDASPCPPSASCVGDPTPLADGAAFDPATDRWRKIADSPV-PLTGGESAVVGGTVYV 122
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88499.20547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A838SS64_9ACTN1.890e-1443.02Uncharacterized protein (Fragment) n=2 Tax=Euzebya... [more]
A0A7Y5RQ44_9PLAN5.950e-741.49Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI001C62B7CD4.140e-641.67hypothetical protein n=1 Tax=Cryobacterium sp. PAM... [more]
A0A3N1CVV1_9ACTN8.540e-644.29Uncharacterized protein n=1 Tax=Actinocorallia her... [more]
A0A7V9T8E4_9ACTN9.120e-652.17Galactose oxidase n=1 Tax=Actinomycetia bacterium ... [more]
UPI001C6675847.220e-538.37hypothetical protein n=1 Tax=Actinoplanes hulinens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88499contigM-pyrifera_M_contig88499:36..686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.6
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog1137268.AZXF01000013_gene1563
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
EggNOG OGsCOG3055@1,COG3055@2
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size651
Cds size651
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.6884403-CDS-M-pyrifera_M_contig88499:35..6861622816794.6884403-CDS-M-pyrifera_M_contig88499:35..686Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88499 36..686 -
1692278182.6112232-CDS-M-pyrifera_M_contig88499:35..6861692278182.6112232-CDS-M-pyrifera_M_contig88499:35..686Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88499 36..686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88499.20547.1prot_M-pyrifera_M_contig88499.20547.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88499 36..686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88499.20547.1

>prot_M-pyrifera_M_contig88499.20547.1 ID=prot_M-pyrifera_M_contig88499.20547.1|Name=mRNA_M-pyrifera_M_contig88499.20547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=217bp
MGVPDGRVTDTAVAPADAPSPRRVRERALVVGAVAIVVALLGTLAALDRT
ADDLDTTTATFTTWRVMSPSPLDARAGSASVWTGDRWFIWGGHQASPVGV
EYFADGALYDPETDRWQVIAPAPLGKSTLPDAVLVGGEIIVGGGSTDTQE
SADAALAAYDPATDRWRVLPDAPGPIVHLQLIDETPTATVVVGEMTALSR
LDMATSAWSEPVSTDLS
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mRNA from alignment at M-pyrifera_M_contig88499:36..686-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88499.20547.1 ID=mRNA_M-pyrifera_M_contig88499.20547.1|Name=mRNA_M-pyrifera_M_contig88499.20547.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=651bp|location=Sequence derived from alignment at M-pyrifera_M_contig88499:36..686- (Macrocystis pyrifera P11B4 male)
ATGGGCGTGCCCGACGGACGCGTCACGGACACCGCCGTCGCGCCGGCCGA
CGCCCCGTCGCCCCGTCGGGTTCGCGAGCGCGCCCTCGTGGTCGGCGCCG
TCGCCATCGTCGTGGCACTCCTCGGCACCCTTGCCGCCCTGGACAGAACC
GCCGATGACCTCGACACCACCACGGCCACGTTCACGACCTGGCGCGTGAT
GTCCCCGTCACCGCTTGACGCGAGGGCAGGCTCGGCTTCTGTCTGGACAG
GCGACCGATGGTTCATCTGGGGCGGCCACCAGGCATCACCTGTCGGAGTC
GAGTACTTCGCCGACGGCGCGCTCTACGACCCCGAGACTGATCGCTGGCA
GGTCATCGCGCCCGCCCCGTTGGGGAAGTCCACCCTCCCCGACGCGGTGC
TGGTCGGCGGCGAGATCATCGTCGGCGGCGGCTCGACCGACACCCAGGAG
TCGGCCGATGCTGCGCTGGCTGCCTACGATCCGGCGACGGACCGTTGGCG
AGTCCTTCCCGACGCGCCGGGCCCGATCGTCCATCTTCAACTCATCGACG
AGACACCCACGGCGACGGTGGTCGTCGGTGAGATGACCGCACTCAGCCGC
CTCGACATGGCGACAAGCGCCTGGAGCGAACCGGTTTCCACCGATCTCTC
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88499:36..686-

>mRNA_M-pyrifera_M_contig88499.20547.1 ID=mRNA_M-pyrifera_M_contig88499.20547.1|Name=mRNA_M-pyrifera_M_contig88499.20547.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig88499:36..686- (Macrocystis pyrifera P11B4 male)
ATGGGCGTGCCCGACGGACGCGTCACGGACACCGCCGTCGCGCCGGCCGA
CGCCCCGTCGCCCCGTCGGGTTCGCGAGCGCGCCCTCGTGGTCGGCGCCG
TCGCCATCGTCGTGGCACTCCTCGGCACCCTTGCCGCCCTGGACAGAACC
GCCGATGACCTCGACACCACCACGGCCACGTTCACGACCTGGCGCGTGAT
GTCCCCGTCACCGCTTGACGCGAGGGCAGGCTCGGCTTCTGTCTGGACAG
GCGACCGATGGTTCATCTGGGGCGGCCACCAGGCATCACCTGTCGGAGTC
GAGTACTTCGCCGACGGCGCGCTCTACGACCCCGAGACTGATCGCTGGCA
GGTCATCGCGCCCGCCCCGTTGGGGAAGTCCACCCTCCCCGACGCGGTGC
TGGTCGGCGGCGAGATCATCGTCGGCGGCGGCTCGACCGACACCCAGGAG
TCGGCCGATGCTGCGCTGGCTGCCTACGATCCGGCGACGGACCGTTGGCG
AGTCCTTCCCGACGCGCCGGGCCCGATCGTCCATCTTCAACTCATCGACG
AGACACCCACGGCGACGGTGGTCGTCGGTGAGATGACCGCACTCAGCCGC
CTCGACATGGCGACAAGCGCCTGGAGCGAACCGGTTTCCACCGATCTCTC
CATGGGCGTGCCCGACGGACGCGTCACGGACACCGCCGTCGCGCCGGCCG
ACGCCCCGTCGCCCCGTCGGGTTCGCGAGCGCGCCCTCGTGGTCGGCGCC
GTCGCCATCGTCGTGGCACTCCTCGGCACCCTTGCCGCCCTGGACAGAAC
CGCCGATGACCTCGACACCACCACGGCCACGTTCACGACCTGGCGCGTGA
TGTCCCCGTCACCGCTTGACGCGAGGGCAGGCTCGGCTTCTGTCTGGACA
GGCGACCGATGGTTCATCTGGGGCGGCCACCAGGCATCACCTGTCGGAGT
CGAGTACTTCGCCGACGGCGCGCTCTACGACCCCGAGACTGATCGCTGGC
AGGTCATCGCGCCCGCCCCGTTGGGGAAGTCCACCCTCCCCGACGCGGTG
CTGGTCGGCGGCGAGATCATCGTCGGCGGCGGCTCGACCGACACCCAGGA
GTCGGCCGATGCTGCGCTGGCTGCCTACGATCCGGCGACGGACCGTTGGC
GAGTCCTTCCCGACGCGCCGGGCCCGATCGTCCATCTTCAACTCATCGAC
GAGACACCCACGGCGACGGTGGTCGTCGGTGAGATGACCGCACTCAGCCG
CCTCGACATGGCGACAAGCGCCTGGAGCGAACCGGTTTCCACCGATCTCT
CC
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