mRNA_M-pyrifera_M_contig88496.20546.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88496.20546.1
Unique NamemRNA_M-pyrifera_M_contig88496.20546.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: UPI001CE3239C (M12 family metallo-peptidase n=1 Tax=Chryseobacterium sp. RG1 TaxID=2801334 RepID=UPI001CE3239C)

HSP 1 Score: 55.8 bits (133), Expect = 1.130e-6
Identity = 35/113 (30.97%), Postives = 55/113 (48.67%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGT-GNYSGDQDFIYGQVIDFSVYINCTPLGNTDNSTYLSSLQLDDTP 339
            AWIDWN +  ++DSE V       A+      S +VP  A+ ++ LRMR+V      Y G   + L    +Y+   +F YG+  D++V +    LG  + S   S +Q+   P
Sbjct:  824 AWIDWNRNGTFEDSEKVLNAAVAAAIPTQYTSSITVPSSAIENQPLRMRVVFI----YAGSGNNGLSIPSDYACGTNFYYGETEDYNVVVTAA-LGTREVSNTNSGIQIYPNP 931          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: A0A4Q1FNW5_9FLAO (Propanediol utilization protein n=1 Tax=Chryseobacterium sp. CH25 TaxID=713559 RepID=A0A4Q1FNW5_9FLAO)

HSP 1 Score: 55.5 bits (132), Expect = 1.550e-6
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGTGNYSGDQDF 234
            AWID+N D ++ DSEM+FT+  +      V+G+FSVP DAVT + L MR+       Y  +P D   +  Y   +D+
Sbjct:  821 AWIDFNRDGIFSDSEMIFTSLPNKI--TPVSGTFSVPMDAVTGKNLIMRVA----LAYENQPLDGCNSQEYGEIEDY 891          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: A0A1M5X3U3_9FLAO (Por secretion system C-terminal sorting domain-containing protein n=2 Tax=Chryseobacterium TaxID=59732 RepID=A0A1M5X3U3_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 3.930e-6
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGTGNYSGDQDFIYGQVIDFSVYINCTPLGNTDNSTYLSSLQLDDTPL 342
            AWID+N D  + DSE++FT+ ++      V+G+FSVP +A TD+ + MR+V      Y  +P         +G   F YG++ D+ V I    LG +D S   + +Q+   P+
Sbjct:  814 AWIDFNRDGNFTDSEIIFTSPSNMV--TPVSGTFSVPANAYTDKKVIMRVV----MAYEDQP--------ENGCNGFAYGEIEDYPVQIQLA-LGTSDVSNPNNDIQIYPNPV 911          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: UPI001E630B56 (GEVED domain-containing protein n=1 Tax=Chryseobacterium oranimense TaxID=421058 RepID=UPI001E630B56)

HSP 1 Score: 53.9 bits (128), Expect = 4.570e-6
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGTGNYSGDQDFIYGQVIDFSVYINCTPLGNTDNSTYLSSLQLDDTP 339
            AWID+N D  + DSE++FT+ ++      V+G+FSVP +A TD+ + MR+V      Y  +P         +G   F YG++ D+ V I    LG +D S   + +Q+   P
Sbjct:  166 AWIDFNRDGNFTDSEIIFTSPSNMV--TPVSGTFSVPANAYTDKKVIMRVV----MAYEDQP--------ENGCNGFAYGEIEDYPVQIQLA-LGTSDVSNPNNDIQIYPNP 262          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: A0A086BLH6_9FLAO (Propanediol utilization protein n=1 Tax=Chryseobacterium piperi TaxID=558152 RepID=A0A086BLH6_9FLAO)

HSP 1 Score: 53.9 bits (128), Expect = 5.360e-6
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGTGNYSGDQDFIYGQVIDFSVYINCTPLGNTDNSTYLSSLQLDDTP 339
            AWID+N D V+ DSE+++T+T   ++   V+G+FSVP DA TD  + MR++      Y  +P         SG     +G+V D+ V I    L   D     +S+Q+   P
Sbjct:  822 AWIDFNRDGVFSDSEIIYTSTP--SITTPVSGTFSVPADAYTDGNVIMRVI----LAYEYQPN--------SGCSSQRFGEVEDYPVLIQSEQLATNDLLKDNNSIQIYPNP 919          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: A0A0Q5Q3C4_9FLAO (Propanediol utilization protein n=1 Tax=Chryseobacterium sp. Leaf180 TaxID=1736289 RepID=A0A0Q5Q3C4_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 9.970e-6
Identity = 37/112 (33.04%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGTGNYSGDQDFIYGQVIDFSVYINCTPLGNTDNSTYLSSLQLDDTP 339
            AWID+N + V++DSE + T+       N +  +F+VP +AV    LR+R VG    T  G    N G GNY  +     G+  D++V I+  PL   + S   + +Q+   P
Sbjct:  807 AWIDFNRNGVFEDSERILTSQVAANTPNPLTVTFTVPANAVQGLGLRLR-VGMLYTTSAGATIVN-GCGNYGNN----LGEFEDYNVVISANPLATVETSNNSNGIQMYPNP 912          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: A0A2X2XP31_9FLAO (Por secretion system C-terminal sorting domain n=1 Tax=Chryseobacterium jejuense TaxID=445960 RepID=A0A2X2XP31_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 9.980e-6
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGTGNYSGDQDF 234
            AWID+N D ++ DSEM+FT+  +      V+G+FSVP DA T + + MR+       Y  +P D   +  Y   +D+
Sbjct:  821 AWIDFNRDGIFSDSEMIFTSLPNKI--TPVSGTFSVPMDAYTGKNIIMRVA----LAYENQPADGCNSQEYGEIEDY 891          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: A0A511YDU9_9FLAO (Fibronectin type-III domain-containing protein n=2 Tax=Chryseobacterium lathyri TaxID=395933 RepID=A0A511YDU9_9FLAO)

HSP 1 Score: 52.8 bits (125), Expect = 1.360e-5
Identity = 39/115 (33.91%), Postives = 56/115 (48.70%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRI---VGTSERTYTGEPCDNLGTGNYSGDQDFIYGQVIDFSVYINCTPLGNTDNSTYLSSLQLDDTP 339
            AWID+N +  ++DSE + T+TT  A  + V  +F+VP  AVT   LRMR+     T+   Y G  C   GT          YG+  D++V +    LG  D +     +QL   P
Sbjct:  815 AWIDFNRNGNFEDSERILTSTTTTA--SPVTATFTVPATAVTGLGLRMRVGMLYTTTANQYIGNACGAYGT----------YGEFEDYNVVVTAA-LGTKDIANPQDGIQLYPNP 916          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: A0A1N7KX95_9FLAO (Por secretion system C-terminal sorting domain-containing protein n=2 Tax=Chryseobacterium TaxID=59732 RepID=A0A1N7KX95_9FLAO)

HSP 1 Score: 52.4 bits (124), Expect = 1.860e-5
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGTGNYSGDQDFIYGQVIDFSVYINCTPLGNTDNSTYLSSLQLDDTP 339
            AWID+N D ++ +SEM+FT+  +      V+G+FSVP DA T + + MR++      Y  +P D   +  Y        G++ D+ V I    L   D +   SS+Q+   P
Sbjct:  823 AWIDFNRDGIFSESEMIFTSVPNKV--TPVSGTFSVPADAYTGKNVIMRVI----MGYLAQPIDGCNSQGY--------GEIEDYPVSIE-QQLSTNDVTKDKSSIQVYPNP 919          
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Match: A0A1M4TUN5_9FLAO (Por secretion system C-terminal sorting domain-containing protein n=3 Tax=Chryseobacterium TaxID=59732 RepID=A0A1M4TUN5_9FLAO)

HSP 1 Score: 52.0 bits (123), Expect = 2.530e-5
Identity = 36/113 (31.86%), Postives = 56/113 (49.56%), Query Frame = 1
Query:    4 AWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMRIVGTSERTYTGEPCDNLGTGNYSGDQDFIYGQVIDFSVYINCTPLGNTDNSTYLSSLQLDDTPL 342
            AWID+N D  + DSE +FT+ ++      V+G+FSVP +A TD  + MR+       Y  +P         +G   F YG++ D+ V I  +   N  N    S +Q+   P+
Sbjct:  814 AWIDFNRDGNFSDSEKIFTSASNMV--TPVSGTFSVPANAYTDRKVIMRVA----MAYENQP--------ENGCNPFAYGEIEDYPVQIQVSLGTNEVNGANNSGIQIYPNPV 912          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88496.20546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
UPI001CE3239C1.130e-630.97M12 family metallo-peptidase n=1 Tax=Chryseobacter... [more]
A0A4Q1FNW5_9FLAO1.550e-638.96Propanediol utilization protein n=1 Tax=Chryseobac... [more]
A0A1M5X3U3_9FLAO3.930e-633.63Por secretion system C-terminal sorting domain-con... [more]
UPI001E630B564.570e-633.93GEVED domain-containing protein n=1 Tax=Chryseobac... [more]
A0A086BLH6_9FLAO5.360e-633.93Propanediol utilization protein n=1 Tax=Chryseobac... [more]
A0A0Q5Q3C4_9FLAO9.970e-633.04Propanediol utilization protein n=1 Tax=Chryseobac... [more]
A0A2X2XP31_9FLAO9.980e-636.36Por secretion system C-terminal sorting domain n=1... [more]
A0A511YDU9_9FLAO1.360e-533.91Fibronectin type-III domain-containing protein n=2... [more]
A0A1N7KX95_9FLAO1.860e-532.14Por secretion system C-terminal sorting domain-con... [more]
A0A1M4TUN5_9FLAO2.530e-531.86Por secretion system C-terminal sorting domain-con... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88496contigM-pyrifera_M_contig88496:21..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.6523194-CDS-M-pyrifera_M_contig88496:20..3621622816794.6523194-CDS-M-pyrifera_M_contig88496:20..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88496 21..362 +
1692278182.6005538-CDS-M-pyrifera_M_contig88496:20..3621692278182.6005538-CDS-M-pyrifera_M_contig88496:20..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88496 21..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88496.20546.1prot_M-pyrifera_M_contig88496.20546.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88496 21..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88496.20546.1

>prot_M-pyrifera_M_contig88496.20546.1 ID=prot_M-pyrifera_M_contig88496.20546.1|Name=mRNA_M-pyrifera_M_contig88496.20546.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
QAWIDWNNDKVWDDSEMVFTTTTDNALDNMVAGSFSVPYDAVTDEILRMR
IVGTSERTYTGEPCDNLGTGNYSGDQDFIYGQVIDFSVYINCTPLGNTDN
STYLSSLQLDDTPL
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mRNA from alignment at M-pyrifera_M_contig88496:21..362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88496.20546.1 ID=mRNA_M-pyrifera_M_contig88496.20546.1|Name=mRNA_M-pyrifera_M_contig88496.20546.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig88496:21..362+ (Macrocystis pyrifera P11B4 male)
CAGGCTTGGATAGATTGGAACAATGACAAAGTTTGGGACGATTCCGAAAT GGTTTTTACCACTACTACGGATAACGCTCTTGACAATATGGTTGCCGGAT CCTTCTCCGTTCCGTATGATGCTGTAACTGATGAAATATTGAGAATGAGA ATAGTAGGAACATCGGAGAGAACATATACTGGTGAACCATGTGATAATTT AGGAACAGGTAATTATTCTGGTGATCAAGATTTCATATATGGGCAGGTGA TAGATTTTAGCGTCTACATTAATTGTACTCCTCTGGGAAACACCGACAAT TCAACCTATTTATCCAGCCTGCAGCTAGATGATACTCCCCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88496:21..362+

>mRNA_M-pyrifera_M_contig88496.20546.1 ID=mRNA_M-pyrifera_M_contig88496.20546.1|Name=mRNA_M-pyrifera_M_contig88496.20546.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig88496:21..362+ (Macrocystis pyrifera P11B4 male)
CAGGCTTGGATAGATTGGAACAATGACAAAGTTTGGGACGATTCCGAAAT
GGTTTTTACCACTACTACGGATAACGCTCTTGACAATATGGTTGCCGGAT
CCTTCTCCGTTCCGTATGATGCTGTAACTGATGAAATATTGAGAATGAGA
ATAGTAGGAACATCGGAGAGAACATATACTGGTGAACCATGTGATAATTT
AGGAACAGGTAATTATTCTGGTGATCAAGATTTCATATATGGGCAGGTGA
TAGATTTTAGCGTCTACATTAATTGTACTCCTCTGGGAAACACCGACAAT
TCAACCTATTTATCCAGCCTGCAGCTAGATGATACTCCCCTTCAGGCTTG
GATAGATTGGAACAATGACAAAGTTTGGGACGATTCCGAAATGGTTTTTA
CCACTACTACGGATAACGCTCTTGACAATATGGTTGCCGGATCCTTCTCC
GTTCCGTATGATGCTGTAACTGATGAAATATTGAGAATGAGAATAGTAGG
AACATCGGAGAGAACATATACTGGTGAACCATGTGATAATTTAGGAACAG
GTAATTATTCTGGTGATCAAGATTTCATATATGGGCAGGTGATAGATTTT
AGCGTCTACATTAATTGTACTCCTCTGGGAAACACCGACAATTCAACCTA
TTTATCCAGCCTGCAGCTAGATGATACTCCCCTT
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