mRNA_M-pyrifera_M_contig88482.20544.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88482.20544.1
Unique NamemRNA_M-pyrifera_M_contig88482.20544.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88482.20544.1 vs. uniprot
Match: A0A2T7PJ94_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PJ94_POMCA)

HSP 1 Score: 52.8 bits (125), Expect = 3.160e-6
Identity = 31/66 (46.97%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:   25 EKKTPLHCWAMNKPSGPEATYKRVFSLLVEKGAPVDAQDCDGNTPLHLACANQNWTAQVLLLQSGA 222
            E K  LHC A    S     +  V  LL+EKG  VDA+D DGNTPLHL     NW     L+Q GA
Sbjct:  789 EYKYLLHCLAS---SSHGDMHTDVCDLLIEKGLSVDAEDHDGNTPLHLTAKAGNWKLMEHLMQKGA 851
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BLAST of mRNA_M-pyrifera_M_contig88482.20544.1 vs. uniprot
Match: A0A382M8G7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382M8G7_9ZZZZ)

HSP 1 Score: 50.8 bits (120), Expect = 6.740e-6
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   25 EKKTPLHCWAMNKPSGPEATYKRVFSLLVEKGAPVDAQDCDGNTPLHLACANQNWTAQVLLLQSGA 222
            +K++ LH  A+N    P A    +  LLV++G  V+AQDCDGNTPLHLA           L+ SGA
Sbjct:   88 DKRSMLHHIALN----PNANSLAIVELLVKRGLDVNAQDCDGNTPLHLALMPFQKDVAKHLMDSGA 149
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BLAST of mRNA_M-pyrifera_M_contig88482.20544.1 vs. uniprot
Match: A0A382KWV6_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382KWV6_9ZZZZ)

HSP 1 Score: 47.4 bits (111), Expect = 3.140e-5
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   94 VFSLLVEKGAPVDAQDCDGNTPLHLACANQNWTAQVLLLQSGA 222
            +  LLVE+G  V+AQDCDGNTPLHLA +         L+ SGA
Sbjct:   17 IVELLVERGLGVNAQDCDGNTPLHLAMSPFQREVAKYLVDSGA 59
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BLAST of mRNA_M-pyrifera_M_contig88482.20544.1 vs. uniprot
Match: UPI001E28B8B8 (ankyrin repeat domain-containing protein n=1 Tax=Paralysiella testudinis TaxID=2809020 RepID=UPI001E28B8B8)

HSP 1 Score: 48.9 bits (115), Expect = 3.150e-5
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   73 PEATYKRVFSLLVEKGAPVDAQDCDGNTPLHLACANQNWTAQVLLLQSGA 222
            P    K+    L+EKG P++AQDC G TPLH A    N  A ++LL++GA
Sbjct:   56 PNKPPKQSIEYLIEKGVPINAQDCYGMTPLHYAMRATNAEAALVLLRAGA 105
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BLAST of mRNA_M-pyrifera_M_contig88482.20544.1 vs. uniprot
Match: A0A892ZLZ8_9NEIS (Ankyrin repeat domain-containing protein n=2 Tax=Paralysiella testudinis TaxID=2809020 RepID=A0A892ZLZ8_9NEIS)

HSP 1 Score: 48.9 bits (115), Expect = 3.580e-5
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   73 PEATYKRVFSLLVEKGAPVDAQDCDGNTPLHLACANQNWTAQVLLLQSGA 222
            P    K+    L+EKG P++AQDC G TPLH A    N  A ++LL++GA
Sbjct:   55 PNKPPKQSIEYLIEKGVPINAQDCYGMTPLHYAMRATNAEAALVLLRAGA 104
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BLAST of mRNA_M-pyrifera_M_contig88482.20544.1 vs. uniprot
Match: A0A2P6NKB8_9EUKA (Myosin light chain kinase (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NKB8_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 7.300e-5
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 1 
Query:    1 MRRLTSAQEKKTPLHCWAMNKPSGPEATYKRVFSLLVEKGAPVDAQDCDGNTPLHLACANQNWTAQVLLLQSGA 222
            +R+     EKK  L        S  E  +  + ++L+E+GA +++QD +GNTPLH A  N N  A  +LL  GA
Sbjct:  772 VRKKPETTEKKEGLSQLRKAPVSEAEEQFTAILNMLIERGAALNSQDFNGNTPLHSAINNSNEVAAKILLNRGA 845
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BLAST of mRNA_M-pyrifera_M_contig88482.20544.1 vs. uniprot
Match: A0A2T7PJ97_POMCA (SOCS box domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PJ97_POMCA)

HSP 1 Score: 48.9 bits (115), Expect = 7.350e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:   79 ATYKRVFSLLVEKGAPVDAQDCDGNTPLHLACANQNWTAQVLLLQSG 219
            A +  V  LL+EKG  V+A+DC+GNTPLH+A    NW      ++ G
Sbjct: 1294 ALHSDVCDLLIEKGLSVNAEDCEGNTPLHVAARVGNWDLVAHFIRKG 1340
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88482.20544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2T7PJ94_POMCA3.160e-646.97Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
A0A382M8G7_9ZZZZ6.740e-643.94Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A382KWV6_9ZZZZ3.140e-553.49Uncharacterized protein n=1 Tax=marine metagenome ... [more]
UPI001E28B8B83.150e-546.00ankyrin repeat domain-containing protein n=1 Tax=P... [more]
A0A892ZLZ8_9NEIS3.580e-546.00Ankyrin repeat domain-containing protein n=2 Tax=P... [more]
A0A2P6NKB8_9EUKA7.300e-536.49Myosin light chain kinase (Fragment) n=1 Tax=Plano... [more]
A0A2T7PJ97_POMCA7.350e-544.68SOCS box domain-containing protein n=2 Tax=Pomacea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88482contigM-pyrifera_M_contig88482:505..726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.5906982-CDS-M-pyrifera_M_contig88482:504..7261622816794.5906982-CDS-M-pyrifera_M_contig88482:504..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88482 505..726 +
1692278182.563774-CDS-M-pyrifera_M_contig88482:504..7261692278182.563774-CDS-M-pyrifera_M_contig88482:504..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88482 505..726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88482.20544.1prot_M-pyrifera_M_contig88482.20544.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88482 505..726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88482.20544.1

>prot_M-pyrifera_M_contig88482.20544.1 ID=prot_M-pyrifera_M_contig88482.20544.1|Name=mRNA_M-pyrifera_M_contig88482.20544.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MRRLTSAQEKKTPLHCWAMNKPSGPEATYKRVFSLLVEKGAPVDAQDCDG
NTPLHLACANQNWTAQVLLLQSGA
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mRNA from alignment at M-pyrifera_M_contig88482:505..726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88482.20544.1 ID=mRNA_M-pyrifera_M_contig88482.20544.1|Name=mRNA_M-pyrifera_M_contig88482.20544.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig88482:505..726+ (Macrocystis pyrifera P11B4 male)
ATGCGGAGGCTGACGAGTGCGCAGGAGAAGAAGACGCCGCTGCACTGCTG
GGCCATGAACAAGCCCAGCGGCCCCGAGGCGACGTACAAACGCGTCTTCT
CGCTGCTGGTGGAGAAGGGGGCCCCGGTGGACGCGCAGGACTGCGACGGC
AACACTCCTCTCCACCTCGCCTGCGCCAACCAGAACTGGACCGCACAGGT
CCTGTTGCTCCAGAGCGGCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88482:505..726+

>mRNA_M-pyrifera_M_contig88482.20544.1 ID=mRNA_M-pyrifera_M_contig88482.20544.1|Name=mRNA_M-pyrifera_M_contig88482.20544.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig88482:505..726+ (Macrocystis pyrifera P11B4 male)
ATGCGGAGGCTGACGAGTGCGCAGGAGAAGAAGACGCCGCTGCACTGCTG
GGCCATGAACAAGCCCAGCGGCCCCGAGGCGACGTACAAACGCGTCTTCT
CGCTGCTGGTGGAGAAGGGGGCCCCGGTGGACGCGCAGGACTGCGACGGC
AACACTCCTCTCCACCTCGCCTGCGCCAACCAGAACTGGACCGCACAGGT
CCTGTTGCTCCAGAGCGGCGCCATGCGGAGGCTGACGAGTGCGCAGGAGA
AGAAGACGCCGCTGCACTGCTGGGCCATGAACAAGCCCAGCGGCCCCGAG
GCGACGTACAAACGCGTCTTCTCGCTGCTGGTGGAGAAGGGGGCCCCGGT
GGACGCGCAGGACTGCGACGGCAACACTCCTCTCCACCTCGCCTGCGCCA
ACCAGAACTGGACCGCACAGGTCCTGTTGCTCCAGAGCGGCGCC
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