mRNA_M-pyrifera_M_contig88412.20534.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88412.20534.1
Unique NamemRNA_M-pyrifera_M_contig88412.20534.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88412.20534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88412contigM-pyrifera_M_contig88412:14..817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size804
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.1839645-CDS-M-pyrifera_M_contig88412:13..8171622816794.1839645-CDS-M-pyrifera_M_contig88412:13..817Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88412 14..817 -
1692278182.355525-CDS-M-pyrifera_M_contig88412:13..8171692278182.355525-CDS-M-pyrifera_M_contig88412:13..817Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88412 14..817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88412.20534.1prot_M-pyrifera_M_contig88412.20534.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88412 14..817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88412.20534.1

>prot_M-pyrifera_M_contig88412.20534.1 ID=prot_M-pyrifera_M_contig88412.20534.1|Name=mRNA_M-pyrifera_M_contig88412.20534.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp
TLLATERAFAALRAGGSVAAWGSSSYGGDASGVRDNLQSGVTSVHATSRA
FAALKEDGSVHTWGGSYGGDSSLVASQLLEGVANLTASTRAFTAFKVSGD
VVPWGDSSSLLGQSSAEFAGISRIVTTESAFAGIKWDGSVITWGGSGYGG
DSDSVQPMLKDVVDIVAMSGTFIAIQSDGDTVVWGSLSDKLPHQLANVQS
IAVDGDNLVAISDSNSLVFYSNLDYFEDVDMTTTAIHNGAMVAATSSACL
VIQEDGHMRTWGKEGYGG
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mRNA from alignment at M-pyrifera_M_contig88412:14..817-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88412.20534.1 ID=mRNA_M-pyrifera_M_contig88412.20534.1|Name=mRNA_M-pyrifera_M_contig88412.20534.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig88412:14..817- (Macrocystis pyrifera P11B4 male)
ACCCTTTTGGCAACTGAGCGAGCTTTTGCTGCACTTCGTGCCGGAGGATC
TGTGGCTGCTTGGGGCTCTTCGTCGTATGGAGGCGACGCATCTGGTGTCA
GGGACAACTTACAAAGCGGGGTCACTTCGGTACATGCGACTTCTCGTGCA
TTTGCAGCGCTGAAAGAAGATGGCTCTGTGCATACCTGGGGTGGGTCGTA
TGGAGGTGACAGTTCTCTCGTTGCTTCACAGCTTCTCGAAGGAGTTGCCA
ACTTAACAGCATCCACGAGAGCGTTCACTGCCTTCAAAGTATCTGGCGAT
GTTGTGCCTTGGGGAGACTCTTCAAGTCTCCTTGGACAATCTTCTGCAGA
GTTTGCCGGAATTTCTCGCATTGTGACGACAGAGAGTGCATTTGCAGGGA
TTAAGTGGGATGGGAGTGTGATTACTTGGGGGGGTAGTGGCTATGGGGGT
GATTCTGACAGTGTCCAACCAATGCTTAAGGATGTTGTCGACATTGTAGC
AATGAGTGGAACTTTCATCGCGATCCAAAGTGATGGAGATACTGTTGTTT
GGGGTTCCCTCTCCGACAAATTGCCTCATCAGCTGGCCAACGTGCAGAGC
ATTGCTGTCGATGGAGATAATCTTGTTGCAATTTCTGATTCGAACTCTCT
TGTCTTCTACAGTAACCTTGACTACTTCGAAGACGTCGACATGACAACAA
CAGCGATTCACAATGGGGCAATGGTTGCTGCCACCTCCTCAGCGTGCCTC
GTGATCCAGGAGGATGGACACATGCGTACTTGGGGCAAGGAAGGATATGG
GGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88412:14..817-

>mRNA_M-pyrifera_M_contig88412.20534.1 ID=mRNA_M-pyrifera_M_contig88412.20534.1|Name=mRNA_M-pyrifera_M_contig88412.20534.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1608bp|location=Sequence derived from alignment at M-pyrifera_M_contig88412:14..817- (Macrocystis pyrifera P11B4 male)
ACCCTTTTGGCAACTGAGCGAGCTTTTGCTGCACTTCGTGCCGGAGGATC
TGTGGCTGCTTGGGGCTCTTCGTCGTATGGAGGCGACGCATCTGGTGTCA
GGGACAACTTACAAAGCGGGGTCACTTCGGTACATGCGACTTCTCGTGCA
TTTGCAGCGCTGAAAGAAGATGGCTCTGTGCATACCTGGGGTGGGTCGTA
TGGAGGTGACAGTTCTCTCGTTGCTTCACAGCTTCTCGAAGGAGTTGCCA
ACTTAACAGCATCCACGAGAGCGTTCACTGCCTTCAAAGTATCTGGCGAT
GTTGTGCCTTGGGGAGACTCTTCAAGTCTCCTTGGACAATCTTCTGCAGA
GTTTGCCGGAATTTCTCGCATTGTGACGACAGAGAGTGCATTTGCAGGGA
TTAAGTGGGATGGGAGTGTGATTACTTGGGGGGGTAGTGGCTATGGGGGT
GATTCTGACAGTGTCCAACCAATGCTTAAGGATGTTGTCGACATTGTAGC
AATGAGTGGAACTTTCATCGCGATCCAAAGTGATGGAGATACTGTTGTTT
GGGGTTCCCTCTCCGACAAATTGCCTCATCAGCTGGCCAACGTGCAGAGC
ATTGCTGTCGATGGAGATAATCTTGTTGCAATTTCTGATTCGAACTCTCT
TGTCTTCTACAGTAACCTTGACTACTTCGAAGACGTCGACATGACAACAA
CAGCGATTCACAATGGGGCAATGGTTGCTGCCACCTCCTCAGCGTGCCTC
GTGATCCAGGAGGATGGACACATGCGTACTTGGGGCAAGGAAGGATATGG
GGGAACCCTTTTGGCAACTGAGCGAGCTTTTGCTGCACTTCGTGCCGGAG
GATCTGTGGCTGCTTGGGGCTCTTCGTCGTATGGAGGCGACGCATCTGGT
GTCAGGGACAACTTACAAAGCGGGGTCACTTCGGTACATGCGACTTCTCG
TGCATTTGCAGCGCTGAAAGAAGATGGCTCTGTGCATACCTGGGGTGGGT
CGTATGGAGGTGACAGTTCTCTCGTTGCTTCACAGCTTCTCGAAGGAGTT
GCCAACTTAACAGCATCCACGAGAGCGTTCACTGCCTTCAAAGTATCTGG
CGATGTTGTGCCTTGGGGAGACTCTTCAAGTCTCCTTGGACAATCTTCTG
CAGAGTTTGCCGGAATTTCTCGCATTGTGACGACAGAGAGTGCATTTGCA
GGGATTAAGTGGGATGGGAGTGTGATTACTTGGGGGGGTAGTGGCTATGG
GGGTGATTCTGACAGTGTCCAACCAATGCTTAAGGATGTTGTCGACATTG
TAGCAATGAGTGGAACTTTCATCGCGATCCAAAGTGATGGAGATACTGTT
GTTTGGGGTTCCCTCTCCGACAAATTGCCTCATCAGCTGGCCAACGTGCA
GAGCATTGCTGTCGATGGAGATAATCTTGTTGCAATTTCTGATTCGAACT
CTCTTGTCTTCTACAGTAACCTTGACTACTTCGAAGACGTCGACATGACA
ACAACAGCGATTCACAATGGGGCAATGGTTGCTGCCACCTCCTCAGCGTG
CCTCGTGATCCAGGAGGATGGACACATGCGTACTTGGGGCAAGGAAGGAT
ATGGGGGA
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