mRNA_M-pyrifera_M_contig88397.20527.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88397.20527.1
Unique NamemRNA_M-pyrifera_M_contig88397.20527.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: UPI000C6FB9C3 (uncharacterized protein F21D5.5 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI000C6FB9C3)

HSP 1 Score: 80.9 bits (198), Expect = 1.050e-15
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    1 LYVSVDAQARASDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            LYV   +       +AA+DMD TL +TISG  FP   NDWQ L P VP KL      G++IV+ SNQ G+  G +TL+  + KI  +    GVP+  F
Sbjct:  185 LYVYTSSGCEGRSKIAAYDMDKTLIKTISGLEFPKDSNDWQLLYPEVPGKLKKFYTEGYKIVILSNQNGLGTGKVTLKDFKIKIERIVKKIGVPMQVF 282
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: A0A6P8YU58_THRPL (uncharacterized protein F21D5.5 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YU58_THRPL)

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-15
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:   34 SDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            SD +AA+DMD T+  T SG  FP   NDW+ L P +P+KL  L   G +IV+F+NQ G+S G  T+  ++ KI  + S  GVP+  F
Sbjct:  158 SDKIAAYDMDGTIITTKSGKVFPENPNDWKILWPEIPSKLQKLHRDGFKIVIFTNQAGISRGKTTVSEIQQKIGKVISALGVPVQAF 244
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: UPI0006C97850 (uncharacterized protein F21D5.5 isoform X1 n=2 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C97850)

HSP 1 Score: 78.2 bits (191), Expect = 9.260e-15
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 LYVSVDAQARASDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPI 285
            +Y SV  + R    +AA+DMD TL +TISG  FP   NDWQ L P VP K+      G++IV+FSNQ G+S G + +   + KI  +    GVP+
Sbjct:  196 VYTSVGCEGRPK--IAAYDMDKTLIKTISGASFPKDCNDWQLLYPEVPGKIKKFYEDGYKIVIFSNQGGLSTGKVKVADFKIKIEKVVKKIGVPM 288
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: A0A6I8TTE8_AEDAE (FHA_2 domain-containing protein n=4 Tax=Stegomyia TaxID=53541 RepID=A0A6I8TTE8_AEDAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-14
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    1 LYVSVDAQARASDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            LY+       ASD VAA+D+D TL +T SG  FP   +DWQ   P VP KL +L   G +IV+F+NQ G+S+G + ++  + KI  +++   VP   F
Sbjct:  198 LYIFTSKDVIASDKVAAYDLDGTLIKTKSGNVFPKTIDDWQIAYPEVPGKLKSLHKNGFKIVLFTNQAGISKGKLKIEDFKQKIGSIQAKLNVPFQVF 295
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: UPI001F018036 (uncharacterized protein F21D5.5 isoform X1 n=8 Tax=Vespa TaxID=7443 RepID=UPI001F018036)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-14
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    1 LYVSVDAQARASDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            +Y S + Q R    +AA+DMD TL +T SG  FP   NDWQ L P VP KL  L   G++IV+F+NQR +  G +T++  + KI  +    GVPI  F
Sbjct:  225 IYTSSNIQNRTK--IAAYDMDGTLIKTKSGLIFPKDCNDWQLLFPEVPKKLKQLYEDGYKIVIFTNQRALGTGKVTIEDFKIKIERVVQKLGVPIQVF 320
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: B0WU84_CULQU (Polynucleotide kinase- 3'-phosphatase n=9 Tax=Culex TaxID=53527 RepID=B0WU84_CULQU)

HSP 1 Score: 77.4 bits (189), Expect = 1.700e-14
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    1 LYVSVDAQARASDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            LY+       AS+ VA++DMD TL +T SG  FP   +DWQ   P VP KL  L   G +IV+F+NQ G+S+G + ++    KI  +++   +P+  F
Sbjct:  156 LYIYTSKDLVASEKVASYDMDGTLIKTKSGNVFPKTIDDWQIAFPEVPGKLKTLHKNGFKIVIFTNQAGISKGKLKIEEFRTKIEALQAKLNLPMQVF 253
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: UPI00062300CC (LOW QUALITY PROTEIN: uncharacterized protein F21D5.5 n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI00062300CC)

HSP 1 Score: 75.5 bits (184), Expect = 8.130e-14
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   43 VAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            VAAFDMD TL +T SG  FP   NDWQ L P VP KL    A G++IV+F+NQ G+S G   +   + KI  +    GVPI  F
Sbjct:  200 VAAFDMDGTLIKTKSGLVFPKDCNDWQLLYPDVPGKLKQHHANGYKIVIFTNQAGLSIGKFKISDFKVKIEKIVQKIGVPIQVF 283
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: A0A6J1R3P1_9HYME (bifunctional polynucleotide phosphatase/kinase n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1R3P1_9HYME)

HSP 1 Score: 74.7 bits (182), Expect = 8.460e-14
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   43 VAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            VAA+DMD TL +  SG  FP   NDWQ L P VP KL  L   G++IV+F+NQ G+S G + +   + KI  +    GVPI  F
Sbjct:    1 VAAYDMDGTLIKPKSGLVFPKDCNDWQLLYPDVPGKLKQLHTNGYKIVIFTNQAGLSTGKVKINDFKRKIEKVVQKIGVPIQVF 84
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BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: A0A6J1SYZ2_FRAOC (uncharacterized protein F21D5.5 n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SYZ2_FRAOC)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-13
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:   34 SDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            S+ VAA+DMD TL  T SG  FP Y +DW+ L P +P KL  L   G++IV+F+NQ G+S G  + + ++ KI  + +   +P+  F
Sbjct:  172 SEKVAAYDMDGTLIITKSGKVFPQYPDDWKILWPEIPTKLQKLQKDGYKIVIFTNQAGISRGKTSAKEIQQKIEKIVATLNIPMQAF 258
[Close]
BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Match: UPI0005EF1C54 (uncharacterized protein F21D5.5 n=1 Tax=Wasmannia auropunctata TaxID=64793 RepID=UPI0005EF1C54)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-13
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 LYVSVDAQARASDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAKLTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFF 294
            +Y S   Q R  + VAA+DMD TL +T SG  FP   NDWQ L P VP KL    A G++IV+F+NQ G+S G   +   ++KI  +    G PI  F
Sbjct:  197 IYNSPSVQNR--EKVAAYDMDGTLIKTKSGLVFPKDCNDWQLLYPDVPGKLKQFHANGYKIVIFTNQAGLSVGKFKISDFKSKIEKIVQKIGAPIQVF 292
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88397.20527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C6FB9C31.050e-1542.86uncharacterized protein F21D5.5 n=1 Tax=Copidosoma... [more]
A0A6P8YU58_THRPL2.600e-1544.83uncharacterized protein F21D5.5 n=1 Tax=Thrips pal... [more]
UPI0006C978509.260e-1543.16uncharacterized protein F21D5.5 isoform X1 n=2 Tax... [more]
A0A6I8TTE8_AEDAE1.260e-1440.82FHA_2 domain-containing protein n=4 Tax=Stegomyia ... [more]
UPI001F0180361.260e-1443.88uncharacterized protein F21D5.5 isoform X1 n=8 Tax... [more]
B0WU84_CULQU1.700e-1438.78Polynucleotide kinase- 3'-phosphatase n=9 Tax=Cule... [more]
UPI00062300CC8.130e-1448.81LOW QUALITY PROTEIN: uncharacterized protein F21D5... [more]
A0A6J1R3P1_9HYME8.460e-1446.43bifunctional polynucleotide phosphatase/kinase n=1... [more]
A0A6J1SYZ2_FRAOC1.100e-1341.38uncharacterized protein F21D5.5 n=1 Tax=Franklinie... [more]
UPI0005EF1C541.110e-1343.88uncharacterized protein F21D5.5 n=1 Tax=Wasmannia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88397contigM-pyrifera_M_contig88397:3..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score80.1
Seed ortholog evalue6.4e-13
Seed eggNOG ortholog7159.AAEL000527-PA
KEGG koko:K08073
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0019205,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046403,GO:0046404,GO:0046483,GO:0050896,GO:0051716,GO:0051731,GO:0051733,GO:0051734,GO:0071704,GO:0090304,GO:0097159,GO:0098501,GO:0098502,GO:0098503,GO:0098504,GO:0098506,GO:0098518,GO:1901360,GO:1901363
EggNOG free text desc.Polynucleotide kinase- 3'-phosphatase
EggNOG OGs38C15@33154,3B9QB@33208,3CT0X@33213,3SJR0@50557,41WZV@6656,44YYD@7147,45EVS@7148,COG0241@1,KOG2134@2759
EC2.7.1.78,3.1.3.32
COG Functional cat.L
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03400
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.6352744-CDS-M-pyrifera_M_contig88397:2..2991622816793.6352744-CDS-M-pyrifera_M_contig88397:2..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88397 3..299 -
1692278181.946526-CDS-M-pyrifera_M_contig88397:2..2991692278181.946526-CDS-M-pyrifera_M_contig88397:2..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88397 3..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88397.20527.1prot_M-pyrifera_M_contig88397.20527.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88397 3..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88397.20527.1

>prot_M-pyrifera_M_contig88397.20527.1 ID=prot_M-pyrifera_M_contig88397.20527.1|Name=mRNA_M-pyrifera_M_contig88397.20527.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
LYVSVDAQARASDLVAAFDMDSTLTRTISGGPFPLYDNDWQWLTPSVPAK
LTALAAGGHRIVVFSNQRGVSEGHITLQRLEAKIRWMRSGAGVPICFFF
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mRNA from alignment at M-pyrifera_M_contig88397:3..299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88397.20527.1 ID=mRNA_M-pyrifera_M_contig88397.20527.1|Name=mRNA_M-pyrifera_M_contig88397.20527.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig88397:3..299- (Macrocystis pyrifera P11B4 male)
CTCTACGTTTCGGTCGATGCCCAGGCGCGTGCCTCCGACCTCGTCGCTGC
CTTCGACATGGACTCCACTCTCACCCGCACGATATCTGGTGGCCCGTTCC
CTCTTTATGACAACGACTGGCAGTGGCTCACGCCTTCGGTGCCCGCCAAG
CTGACTGCGCTGGCTGCCGGAGGCCACAGGATTGTGGTGTTCTCCAATCA
GAGGGGCGTCTCCGAGGGCCACATCACTCTGCAGAGGCTCGAGGCCAAAA
TTAGGTGGATGAGGAGTGGTGCAGGTGTCCCCATTTGCTTCTTCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88397:3..299-

>mRNA_M-pyrifera_M_contig88397.20527.1 ID=mRNA_M-pyrifera_M_contig88397.20527.1|Name=mRNA_M-pyrifera_M_contig88397.20527.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig88397:3..299- (Macrocystis pyrifera P11B4 male)
CTCTACGTTTCGGTCGATGCCCAGGCGCGTGCCTCCGACCTCGTCGCTGC
CTTCGACATGGACTCCACTCTCACCCGCACGATATCTGGTGGCCCGTTCC
CTCTTTATGACAACGACTGGCAGTGGCTCACGCCTTCGGTGCCCGCCAAG
CTGACTGCGCTGGCTGCCGGAGGCCACAGGATTGTGGTGTTCTCCAATCA
GAGGGGCGTCTCCGAGGGCCACATCACTCTGCAGAGGCTCGAGGCCAAAA
TTAGGTGGATGAGGAGTGGTGCAGGTGTCCCCATTTGCTTCTTCTTTCTC
TACGTTTCGGTCGATGCCCAGGCGCGTGCCTCCGACCTCGTCGCTGCCTT
CGACATGGACTCCACTCTCACCCGCACGATATCTGGTGGCCCGTTCCCTC
TTTATGACAACGACTGGCAGTGGCTCACGCCTTCGGTGCCCGCCAAGCTG
ACTGCGCTGGCTGCCGGAGGCCACAGGATTGTGGTGTTCTCCAATCAGAG
GGGCGTCTCCGAGGGCCACATCACTCTGCAGAGGCTCGAGGCCAAAATTA
GGTGGATGAGGAGTGGTGCAGGTGTCCCCATTTGCTTCTTCTTT
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