mRNA_M-pyrifera_M_contig88357.20524.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88357.20524.1
Unique NamemRNA_M-pyrifera_M_contig88357.20524.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A6B1EFA9_9ACTN (Iron ABC transporter permease n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EFA9_9ACTN)

HSP 1 Score: 404 bits (1037), Expect = 5.350e-139
Identity = 214/269 (79.55%), Postives = 237/269 (88.10%), Query Frame = 1
Query:   10 VFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGRSTVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADL 816
            V  QL DGLP + +DSGL+    AIV QIRLPR+VLGL+VGATLS+SGAAYQGAFRNPLADPYLLGIAAGAGLGAT+AIT   GDGAG  DPVPLAAFAG L +V +SY AGH+GGRST +LILAG+AVASFLTACQTYVLQANSD  R++++WILGRIATSGW EPAL+ PYFV+   VVLRYRRALDVLAVGDEEAAALG++PRRVR++VVLAASLGAAAAV+VSGLIGFVGIIVPH VRLAFG SNR VLPLSVLFG AFMV ADL
Sbjct:   38 VVIQLLDGLPAVSLDSGLSDAHAAIVEQIRLPRVVLGLLVGATLSMSGAAYQGAFRNPLADPYLLGIAAGAGLGATVAITSNLGDGAGALDPVPLAAFAGALISVTVSYAAGHLGGRSTASLILAGIAVASFLTACQTYVLQANSDAFRQIFAWILGRIATSGWSEPALMLPYFVVAAAVVLRYRRALDVLAVGDEEAAALGLEPRRVRMIVVLAASLGAAAAVSVSGLIGFVGIIVPHAVRLAFGTSNRAVLPLSVLFGGAFMVLADL 306          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A3M2GI07_ACTSX (Iron ABC transporter permease n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GI07_ACTSX)

HSP 1 Score: 401 bits (1031), Expect = 1.190e-137
Identity = 218/269 (81.04%), Postives = 240/269 (89.22%), Query Frame = 1
Query:   10 VFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGRSTVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADL 816
            VF +L D L  + VDSGL     AIV++IRLPR+VLGL+VGATLSL+GAAYQGAFRNPLADPYLLGIAAGAGLGAT+A+T   GDG G  DPVPLAAFAG L AV  SYL GH+GGRSTV+LILAGVAVASFLTACQTYVLQ+N+DVIRE+Y+WILGR+ATSGW EPALLAPYFVLT  VVLR+RRALDVLAV DEEAAALG+DPRRVRL VV+AASLGAAAAV+VSGLIGFVGIIVPHTVRLAFGA +R VLPLS+LFGAAFMVAADL
Sbjct:   67 VFLELVDHLTGLHVDSGLDAGTAAIVTEIRLPRVVLGLLVGATLSLTGAAYQGAFRNPLADPYLLGIAAGAGLGATVALTADLGDGVGWADPVPLAAFAGALVAVAASYLLGHLGGRSTVSLILAGVAVASFLTACQTYVLQSNTDVIREIYAWILGRVATSGWSEPALLAPYFVLTAAVVLRHRRALDVLAVSDEEAAALGLDPRRVRLTVVVAASLGAAAAVSVSGLIGFVGIIVPHTVRLAFGAGHRRVLPLSILFGAAFMVAADL 335          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A7K2BST3_9ACTN (Iron ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2BST3_9ACTN)

HSP 1 Score: 384 bits (986), Expect = 4.880e-131
Identity = 203/270 (75.19%), Postives = 233/270 (86.30%), Query Frame = 1
Query:   10 VFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGRSTVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADLI 819
            V  +LAD LP +  DSGL+    AIV+ IRLPR+VLGL+VGATL++SGA YQ AFRNPLADPYLLGIAAGAGLGAT+AI    GDGAG+FDPVPLAAFAG + AV  ++ AGH+GGRST +LILAG+AVASFL ACQTY+LQAN+D  R++++WILGRIATSGW EPALLAPYF++T VVVLRYRRALDVLAVGD+EAAALG++PR VR +VVLAASLG AAAV+VSGLIGFVGIIVPH VRL FG SNR VLPLSVLFG AFMV ADL+
Sbjct:   52 VVMELADALPAVNADSGLSDAHAAIVTNIRLPRVVLGLLVGATLAVSGATYQAAFRNPLADPYLLGIAAGAGLGATVAIVNNAGDGAGLFDPVPLAAFAGAIVAVVAAFAAGHLGGRSTASLILAGIAVASFLGACQTYMLQANNDAFRKIFAWILGRIATSGWSEPALLAPYFLVTTVVVLRYRRALDVLAVGDDEAAALGLEPRLVRTIVVLAASLGTAAAVSVSGLIGFVGIIVPHAVRLVFGTSNRAVLPLSVLFGGAFMVLADLV 321          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A6B1B3S0_9ACTN (Iron ABC transporter permease n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1B3S0_9ACTN)

HSP 1 Score: 383 bits (984), Expect = 6.980e-131
Identity = 203/269 (75.46%), Postives = 235/269 (87.36%), Query Frame = 1
Query:   10 VFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGRSTVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADL 816
            V  +LA+ LP I V+SGL+   +AIV+ IRLPR+VLGL+VGATL++SGA YQ AFRNPLADPYLLGIAAGAGLGATIAI    GDGAGVFD VPLAAF G L AV ++YLAGHIGGRST +LILAG+AVASFL ACQTY+LQAN+D  R++ +W+LGRIATSGW EPALL PYFV+T  VVLRYRRALDVLAVGDEEAAALG++PRR+RL+V++AASLGAAAAV+VSGLI FVGIIVPH +RL FG+SNRV+LPLSVLFG AF+V ADL
Sbjct:   42 VLMELANLLPGIAVESGLSDAHKAIVTDIRLPRVVLGLLVGATLAMSGATYQAAFRNPLADPYLLGIAAGAGLGATIAIVNDIGDGAGVFDLVPLAAFGGALGAVTVAYLAGHIGGRSTASLILAGIAVASFLAACQTYLLQANADAFRQILAWLLGRIATSGWSEPALLLPYFVVTTAVVLRYRRALDVLAVGDEEAAALGLEPRRIRLIVLIAASLGAAAAVSVSGLISFVGIIVPHAIRLIFGSSNRVLLPLSVLFGGAFLVLADL 310          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A2D6UCB1_9ACTN (ABC transporter permease n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UCB1_9ACTN)

HSP 1 Score: 382 bits (980), Expect = 3.850e-130
Identity = 202/269 (75.09%), Postives = 232/269 (86.25%), Query Frame = 1
Query:   10 VFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGRSTVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADL 816
            +  +L D LP I +DSGL+    AI+ QIRLPR+VLG +VGATLS+SGAAYQGAFRNPLADPYLLGIAAGAGLGAT+AIT+ +GDG G  DPVPLAAF G L AV +SY AGH+GGRST +LILAGVAVASFLTA QTYVLQANSD  REVY+WILGRIATSGW E  L+ PYF+L   +V RYRRALDVLA+GDEEA ALG++PR++R++VVLAASLGAAAAV+VSGLIGFVGIIVPH VRLAFGAS+RV++PLS+LFG AFMV ADL
Sbjct:   51 IVYELLDDLPLINLDSGLSAQRVAIIEQIRLPRVVLGFLVGATLSVSGAAYQGAFRNPLADPYLLGIAAGAGLGATVAITQDWGDGGGFTDPVPLAAFGGALLAVVLSYTAGHVGGRSTASLILAGVAVASFLTAAQTYVLQANSDAFREVYAWILGRIATSGWSEVVLMVPYFLLAAGIVFRYRRALDVLAIGDEEAQALGLEPRKIRVIVVLAASLGAAAAVSVSGLIGFVGIIVPHAVRLAFGASHRVLVPLSILFGGAFMVLADL 319          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A800ICR8_9ACTN (Iron ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800ICR8_9ACTN)

HSP 1 Score: 336 bits (862), Expect = 2.330e-112
Identity = 182/275 (66.18%), Postives = 218/275 (79.27%), Query Frame = 1
Query:    1 VGEVFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGR--STVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADLI 819
            VGEV R+L DGLP ++VDSGL   ++AI+ +IRLPR+VLGLMVGA L  +G AYQG FRNPLADPYLLG+AAGAG GAT AI  G GDG GVFD VP+ AFAG L AV ++YL G  GGR     +L+LAGVAVASF TA QT+V Q NS+ IR+VY ++LG++ T+GW+E  L+ PY V+ L V+L  RR +D L VGDEEA +LG+D RRVRLV VLAASLG AA V+VSGLIGFVGIIVPHT+RL FG+S RV+LPL+VLFG AFMVAADL+
Sbjct:   38 VGEVLRELFDGLPLVDVDSGLGVRQKAIIWEIRLPRVVLGLMVGAMLGTAGGAYQGVFRNPLADPYLLGVAAGAGFGATTAIVAGLGDGIGVFDAVPMMAFAGALTAVALTYLVGSAGGRLDPVTSLVLAGVAVASFFTAVQTFVQQRNSETIRQVYFFVLGQLRTAGWNEVLLITPYVVVCLTVILLVRRRMDALGVGDEEAGSLGLDVRRVRLVTVLAASLGTAAVVSVSGLIGFVGIIVPHTIRLLFGSSYRVILPLTVLFGGAFMVAADLV 312          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A355DCP8_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355DCP8_9ACTN)

HSP 1 Score: 333 bits (855), Expect = 3.610e-111
Identity = 180/275 (65.45%), Postives = 220/275 (80.00%), Query Frame = 1
Query:    1 VGEVFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGR--STVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADLI 819
            +GEV  +LADGLP+++  SGL   +QAI+ +IRLPR+VL L+VGA L+ +G AYQG FRNPLADPYLLG+AAGAG GAT+AI  G GDG GVFD VPL+AFAG LAAV ++YL G  GGR     +L+L+GVAVASF TA QT+V Q  S+ IR+VY ++LG++ T+GWDE  LLAPY V+ + V+L  RR LD L VGDEEA ALG+D RR+RLV V+AASLG AAAV+VSGLIGFVGIIVPHTVRL FG S RV+LPL+VLFG AF+VAAD++
Sbjct:   47 IGEVLTELADGLPFVDAGSGLGARQQAIIWEIRLPRVVLALLVGAMLATAGGAYQGVFRNPLADPYLLGVAAGAGFGATMAIVSGVGDGIGVFDAVPLSAFAGALAAVTLTYLVGGTGGRLDPVTSLVLSGVAVASFFTAVQTFVQQRESETIRQVYFFVLGQLRTAGWDEVTLLAPYTVVCISVILLVRRRLDALGVGDEEAGALGLDVRRMRLVTVVAASLGTAAAVSVSGLIGFVGIIVPHTVRLLFGTSYRVILPLTVLFGGAFLVAADIV 321          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A2E9W131_9ACTN (ABC transporter permease n=5 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9W131_9ACTN)

HSP 1 Score: 323 bits (828), Expect = 3.560e-107
Identity = 174/274 (63.50%), Postives = 216/274 (78.83%), Query Frame = 1
Query:    4 GEVFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGR--STVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADLI 819
            GEV  +L D LP ++VDSGL   +QAI+ +IRLPR+VLGL+VGA L+ +G AYQG FRNPLADPYLLG+AAGAG GAT+AI  G GDG G+ DPVPL+AFAG L AV ++YL G  GGR     +L+L+GVAVASF TA QT+V Q  S+ IR+VY ++LG++ T+GW++  LLAPY  + L V+L  RR LD L VGDEEA +LG+D RR+RL+ V+AASLG AAAV+VSGLIGFVGIIVPHTVRL FG S RV+LPL+VLFG AF+V AD++
Sbjct:   41 GEVLVELVDRLPLVDVDSGLGERQQAIIWEIRLPRVVLGLLVGAMLATAGGAYQGVFRNPLADPYLLGVAAGAGFGATMAIVSGAGDGVGILDPVPLSAFAGALVAVTLTYLVGATGGRLDPVTSLVLSGVAVASFFTAVQTFVQQRESETIRQVYFFVLGQLRTAGWNDVTLLAPYTGVCLAVILMVRRRLDALGVGDEEAGSLGLDVRRMRLITVVAASLGTAAAVSVSGLIGFVGIIVPHTVRLLFGTSYRVILPLTVLFGGAFLVLADVV 314          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A0C1UF30_9ACTN (ABC transporter permease n=2 Tax=unclassified Actinomycetia TaxID=52018 RepID=A0A0C1UF30_9ACTN)

HSP 1 Score: 319 bits (818), Expect = 1.470e-105
Identity = 175/275 (63.64%), Postives = 214/275 (77.82%), Query Frame = 1
Query:    1 VGEVFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGGR--STVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADLI 819
            V EV  ++ D LP+I+ DSGL+  EQAIV +IRLPR+VLGL+VG+ L+ +GA+YQG FRNPLADPYLLG+AAGAG GAT+AI  G GDG G FD VP+ AFAG L AV ++YL G   GR     +L+LAGVAVASF TA QT+V Q +S+ IR+VY ++LG++ T+GWDE  L++PY    L+++L  RR LDVL VGDEEA +LGVD R VRL  VLAASLG AA VAVSGLIGFVGIIVPHT+RL FG S RV+LPL+VLFG AF+V ADL+
Sbjct:   48 VREVLVEMLDRLPYIDTDSGLSAREQAIVWEIRLPRVVLGLLVGSMLATAGASYQGVFRNPLADPYLLGVAAGAGFGATVAIVSGLGDGIGTFDAVPMLAFAGALIAVTLTYLVGFSAGRIDPVTSLVLAGVAVASFFTAVQTFVQQRDSETIRQVYFFVLGQLRTAGWDEVVLVSPYVGPCLLILLLLRRRLDVLGVGDEEAGSLGVDVRLVRLTAVLAASLGTAAVVAVSGLIGFVGIIVPHTIRLIFGFSYRVILPLTVLFGGAFLVGADLV 322          
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Match: A0A2E4GSC1_9ACTN (ABC transporter permease n=4 Tax=Acidimicrobiales TaxID=84993 RepID=A0A2E4GSC1_9ACTN)

HSP 1 Score: 318 bits (815), Expect = 3.110e-105
Identity = 174/273 (63.74%), Postives = 214/273 (78.39%), Query Frame = 1
Query:    7 EVFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLSGAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAAFAGGLAAVWISYLAGHIGG--RSTVTLILAGVAVASFLTACQTYVLQANSDVIREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEEAAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGASNRVVLPLSVLFGAAFMVAADLI 819
            +  ++L D LP+I VDSGL+  ++ I+ ++RLPR+ LG +VG TL+LSGA+YQ  FRNPLADPYLLG AAGAGLGAT+AI  G GDG G FD VPL AF G L AV ++YL G+  G  RS   L+LAGVAVASFLTA QT++ Q N + IR+VYSWILGR+ T+ WDE +LLAPY   + +++L YRR LDV+ +GD EA++LG+ P+ VRLVV+ AASLG AAAVAVSGLI FVGIIVPHTVRL  GASNRVVLPLS+LFGAAF+V  DL+
Sbjct:   39 DALKELLDRLPFISVDSGLSPIQKNIIWEVRLPRVALGALVGGTLALSGASYQAVFRNPLADPYLLGAAAGAGLGATVAIVTGSGDGVGTFDLVPLLAFVGALIAVALTYLLGYSSGTQRSPAALLLAGVAVASFLTAIQTFIQQQNVETIRQVYSWILGRLNTASWDEVSLLAPYAFASGLLILVYRRVLDVMRLGDLEASSLGIRPQLVRLVVICAASLGTAAAVAVSGLIAFVGIIVPHTVRLVAGASNRVVLPLSILFGAAFLVFVDLL 311          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88357.20524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1EFA9_9ACTN5.350e-13979.55Iron ABC transporter permease n=6 Tax=Acidimicrobi... [more]
A0A3M2GI07_ACTSX1.190e-13781.04Iron ABC transporter permease n=1 Tax=Actinomyces ... [more]
A0A7K2BST3_9ACTN4.880e-13175.19Iron ABC transporter permease n=1 Tax=Acidimicrobi... [more]
A0A6B1B3S0_9ACTN6.980e-13175.46Iron ABC transporter permease n=2 Tax=Acidimicrobi... [more]
A0A2D6UCB1_9ACTN3.850e-13075.09ABC transporter permease n=7 Tax=Acidimicrobiaceae... [more]
A0A800ICR8_9ACTN2.330e-11266.18Iron ABC transporter permease n=1 Tax=Acidimicrobi... [more]
A0A355DCP8_9ACTN3.610e-11165.45ABC transporter permease n=1 Tax=Acidimicrobiaceae... [more]
A0A2E9W131_9ACTN3.560e-10763.50ABC transporter permease n=5 Tax=Actinobacteria Ta... [more]
A0A0C1UF30_9ACTN1.470e-10563.64ABC transporter permease n=2 Tax=unclassified Acti... [more]
A0A2E4GSC1_9ACTN3.110e-10563.74ABC transporter permease n=4 Tax=Acidimicrobiales ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88357contigM-pyrifera_M_contig88357:2..820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score303.9
Seed ortholog evalue7.5e-80
Seed eggNOG ortholog390989.JOEG01000009_gene1046
Preferred namefecD
KEGG koko:K02015
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
EggNOG OGs2GK8Z@201174,4D9B0@85008,COG0609@1,COG0609@2
COG Functional cat.P
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size819
Cds size819
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.457905-CDS-M-pyrifera_M_contig88357:1..8201622816793.457905-CDS-M-pyrifera_M_contig88357:1..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88357 2..820 -
1692278181.7996497-CDS-M-pyrifera_M_contig88357:1..8201692278181.7996497-CDS-M-pyrifera_M_contig88357:1..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88357 2..820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88357.20524.1prot_M-pyrifera_M_contig88357.20524.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88357 2..820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88357.20524.1

>prot_M-pyrifera_M_contig88357.20524.1 ID=prot_M-pyrifera_M_contig88357.20524.1|Name=mRNA_M-pyrifera_M_contig88357.20524.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=273bp
VGEVFRQLADGLPWIEVDSGLTTTEQAIVSQIRLPRLVLGLMVGATLSLS
GAAYQGAFRNPLADPYLLGIAAGAGLGATIAITEGFGDGAGVFDPVPLAA
FAGGLAAVWISYLAGHIGGRSTVTLILAGVAVASFLTACQTYVLQANSDV
IREVYSWILGRIATSGWDEPALLAPYFVLTLVVVLRYRRALDVLAVGDEE
AAALGVDPRRVRLVVVLAASLGAAAAVAVSGLIGFVGIIVPHTVRLAFGA
SNRVVLPLSVLFGAAFMVAADLI
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mRNA from alignment at M-pyrifera_M_contig88357:2..820-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88357.20524.1 ID=mRNA_M-pyrifera_M_contig88357.20524.1|Name=mRNA_M-pyrifera_M_contig88357.20524.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=819bp|location=Sequence derived from alignment at M-pyrifera_M_contig88357:2..820- (Macrocystis pyrifera P11B4 male)
GTCGGCGAGGTGTTTCGGCAGCTGGCCGACGGGCTGCCCTGGATCGAGGT CGACTCGGGTCTCACGACCACCGAGCAGGCGATCGTGTCGCAGATTCGTC TTCCCCGTCTCGTGCTCGGCTTGATGGTGGGGGCCACGTTGTCGCTGAGC GGGGCCGCCTATCAGGGAGCGTTTCGTAACCCCCTGGCCGATCCGTACCT GCTCGGCATCGCCGCCGGGGCCGGGCTCGGAGCGACCATCGCGATCACCG AAGGCTTCGGTGACGGCGCCGGCGTGTTCGACCCGGTACCGCTGGCCGCC TTCGCCGGTGGCCTCGCCGCAGTGTGGATCTCCTACCTGGCCGGCCACAT CGGCGGGCGATCGACCGTCACCCTGATCCTGGCCGGCGTGGCCGTCGCCA GCTTCCTCACCGCATGCCAGACCTACGTGCTGCAGGCGAACAGCGACGTC ATCCGCGAGGTCTACAGCTGGATCCTCGGCCGGATCGCCACTTCGGGATG GGACGAACCCGCCCTCCTCGCTCCCTACTTCGTGCTCACCCTTGTGGTCG TCCTGCGCTACCGCCGCGCCCTCGACGTGCTCGCGGTGGGAGACGAAGAA GCTGCCGCGCTCGGCGTCGATCCTCGCCGCGTGCGCCTGGTGGTGGTGCT CGCGGCCTCGCTCGGTGCGGCCGCCGCGGTGGCCGTCTCGGGCCTGATCG GGTTCGTCGGCATCATCGTGCCCCACACCGTGCGCCTCGCGTTCGGGGCC AGCAATCGGGTCGTGCTCCCGCTGTCGGTCCTGTTCGGGGCCGCCTTCAT GGTCGCCGCCGACCTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88357:2..820-

>mRNA_M-pyrifera_M_contig88357.20524.1 ID=mRNA_M-pyrifera_M_contig88357.20524.1|Name=mRNA_M-pyrifera_M_contig88357.20524.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1638bp|location=Sequence derived from alignment at M-pyrifera_M_contig88357:2..820- (Macrocystis pyrifera P11B4 male)
GTCGGCGAGGTGTTTCGGCAGCTGGCCGACGGGCTGCCCTGGATCGAGGT
CGACTCGGGTCTCACGACCACCGAGCAGGCGATCGTGTCGCAGATTCGTC
TTCCCCGTCTCGTGCTCGGCTTGATGGTGGGGGCCACGTTGTCGCTGAGC
GGGGCCGCCTATCAGGGAGCGTTTCGTAACCCCCTGGCCGATCCGTACCT
GCTCGGCATCGCCGCCGGGGCCGGGCTCGGAGCGACCATCGCGATCACCG
AAGGCTTCGGTGACGGCGCCGGCGTGTTCGACCCGGTACCGCTGGCCGCC
TTCGCCGGTGGCCTCGCCGCAGTGTGGATCTCCTACCTGGCCGGCCACAT
CGGCGGGCGATCGACCGTCACCCTGATCCTGGCCGGCGTGGCCGTCGCCA
GCTTCCTCACCGCATGCCAGACCTACGTGCTGCAGGCGAACAGCGACGTC
ATCCGCGAGGTCTACAGCTGGATCCTCGGCCGGATCGCCACTTCGGGATG
GGACGAACCCGCCCTCCTCGCTCCCTACTTCGTGCTCACCCTTGTGGTCG
TCCTGCGCTACCGCCGCGCCCTCGACGTGCTCGCGGTGGGAGACGAAGAA
GCTGCCGCGCTCGGCGTCGATCCTCGCCGCGTGCGCCTGGTGGTGGTGCT
CGCGGCCTCGCTCGGTGCGGCCGCCGCGGTGGCCGTCTCGGGCCTGATCG
GGTTCGTCGGCATCATCGTGCCCCACACCGTGCGCCTCGCGTTCGGGGCC
AGCAATCGGGTCGTGCTCCCGCTGTCGGTCCTGTTCGGGGCCGCCTTCAT
GGTCGCCGCCGACCTGATCGTCGGCGAGGTGTTTCGGCAGCTGGCCGACG
GGCTGCCCTGGATCGAGGTCGACTCGGGTCTCACGACCACCGAGCAGGCG
ATCGTGTCGCAGATTCGTCTTCCCCGTCTCGTGCTCGGCTTGATGGTGGG
GGCCACGTTGTCGCTGAGCGGGGCCGCCTATCAGGGAGCGTTTCGTAACC
CCCTGGCCGATCCGTACCTGCTCGGCATCGCCGCCGGGGCCGGGCTCGGA
GCGACCATCGCGATCACCGAAGGCTTCGGTGACGGCGCCGGCGTGTTCGA
CCCGGTACCGCTGGCCGCCTTCGCCGGTGGCCTCGCCGCAGTGTGGATCT
CCTACCTGGCCGGCCACATCGGCGGGCGATCGACCGTCACCCTGATCCTG
GCCGGCGTGGCCGTCGCCAGCTTCCTCACCGCATGCCAGACCTACGTGCT
GCAGGCGAACAGCGACGTCATCCGCGAGGTCTACAGCTGGATCCTCGGCC
GGATCGCCACTTCGGGATGGGACGAACCCGCCCTCCTCGCTCCCTACTTC
GTGCTCACCCTTGTGGTCGTCCTGCGCTACCGCCGCGCCCTCGACGTGCT
CGCGGTGGGAGACGAAGAAGCTGCCGCGCTCGGCGTCGATCCTCGCCGCG
TGCGCCTGGTGGTGGTGCTCGCGGCCTCGCTCGGTGCGGCCGCCGCGGTG
GCCGTCTCGGGCCTGATCGGGTTCGTCGGCATCATCGTGCCCCACACCGT
GCGCCTCGCGTTCGGGGCCAGCAATCGGGTCGTGCTCCCGCTGTCGGTCC
TGTTCGGGGCCGCCTTCATGGTCGCCGCCGACCTGATC
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