mRNA_M-pyrifera_M_contig88354.20523.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88354.20523.1
Unique NamemRNA_M-pyrifera_M_contig88354.20523.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: W7TXB8_9STRA (Decaprenyl-diphosphate synthase subunit 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXB8_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.220e-43
Identity = 113/260 (43.46%), Postives = 135/260 (51.92%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQ---MANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAEDGE 771
            +P  +VE +M+ LSA I+ LLGSDHPVLE   +YFF                                                                          L SQ+RLAEITEMIH ASL HDDVID+A+ RRGVPS N  +GNK+AILAGDFLLARAS +LARLR++  VELLSTVIEHLVKGEV+Q    A V     GE             +  A  + YL K+FYKTGSL+AN+ +AAVLLA  G+
Sbjct:  142 DPFKIVESDMRSLSAGIKSLLGSDHPVLEACAKYFFELDGGKKIRPTMVLLISRAVAAHAPAQGVNGSRAFTSTSESSTP------------------------------LPSQKRLAEITEMIHTASLFHDDVIDEADERRGVPSINKIYGNKMAILAGDFLLARASVSLARLRNIEVVELLSTVIEHLVKGEVMQSRPQALVDGSGTGE-------------NGQAALEYYLHKNFYKTGSLMANSCRAAVLLAGGGD 358          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: B2ZWF4_9STRA (Polyprenyl synthetase (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=B2ZWF4_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.300e-42
Identity = 105/257 (40.86%), Postives = 135/257 (52.53%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAEDGE 771
            +P  +V++ +  +S NI+ +LGSDHPVLE V +YFF                                                                            SQ+RLAEITEMIH ASLLHDDVID+A+TRRG+ S N  FG+K++ILAGDFLLAR+S  LARLR L AVEL+ST IEHLVKGEV+QM +          +K G +S         F+ YLRK++YKTGSL+AN+ KA+++L E  E
Sbjct:   42 DPFALVKDSISSVSDNIKMILGSDHPVLEAVAKYFFENDGGKKIRPTMILLLSRAAEAERAADQSTFPKSPEYIAA------------------------------------SQQRLAEITEMIHTASLLHDDVIDEADTRRGMQSVNKVFGSKMSILAGDFLLARSSICLARLRSLEAVELMSTAIEHLVKGEVMQMRHA---------DKNGAISP--------FEYYLRKNYYKTGSLMANSCKASLILGEHSE 245          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: W4H8F9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8F9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.410e-41
Identity = 104/257 (40.47%), Postives = 135/257 (52.53%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAEDGE 771
            +P  +V++ +  +SANI+ +LGSDHPVLE V +YFF                                                                            SQ+RLAEITEMIH ASLLHDDVID+A+TRRG+ S N  FG+K++ILAGDFLLAR+S  LARLR L AVEL+ST IEHLVKGEV+QM +  +          G   SP       F+ YLRK++YKTGSL+AN+ KA+++L +  +
Sbjct:   99 DPFALVKDSIVSVSANIKMILGSDHPVLEAVAKYFFDNDGGKKIRPTMILLVSQAAEADRVADQSTFPKSPEYIAA------------------------------------SQQRLAEITEMIHTASLLHDDVIDEADTRRGMQSVNKVFGSKLSILAGDFLLARSSICLARLRSLEAVELMSTAIEHLVKGEVMQMRHADK----------GGTISP-------FEYYLRKNYYKTGSLMANSCKASLVLGDHSD 302          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: A0A6G0XWT1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWT1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.760e-41
Identity = 105/257 (40.86%), Postives = 135/257 (52.53%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAEDGE 771
            +P  +V++ +  +S NI+ +LGSDHPVLE V +YFF                                                                            SQ+RLAEITEMIH ASLLHDDVID+A+TRRG+ S N  FG+K++ILAGDFLLAR+S  LARLR L AVEL+ST IEHLVKGEV+QM +          +K G +S         F+ YLRK++YKTGSL+AN+ KA+++L E  E
Sbjct:   97 DPFALVKDSISSVSDNIKMILGSDHPVLEAVAKYFFENDGGKKIRPTMILLLSRAAEAERAADQSTFPKSPEYIAA------------------------------------SQQRLAEITEMIHTASLLHDDVIDEADTRRGMQSVNKVFGSKMSILAGDFLLARSSICLARLRSLEAVELMSTAIEHLVKGEVMQMRHA---------DKNGAISP--------FEYYLRKNYYKTGSLMANSCKASLILGEHSE 300          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: A0A024U4T7_9STRA (Solanesyl diphosphate synthase, variant n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4T7_9STRA)

HSP 1 Score: 154 bits (388), Expect = 6.690e-41
Identity = 104/254 (40.94%), Postives = 135/254 (53.15%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAE 762
            +P  +V++ +  +SANI+ +LGSDHPVLE V +YFF                                                                            SQ+RLAEITEMIH ASLLHDDVID+A+TRRG+ S N  FG+K++ILAGDFLLAR+S  LARLR L AVEL+ST IEHLVKGEV+QM +          +K G +S         F+ YLRK++YKTGSL+AN+ KA+++L +
Sbjct:   97 DPFALVKDSIVSVSANIKMILGSDHPVLEAVAKYFFENDGGKKIRPTMILLLSQAAEADRLAGQSTFPKSAEYIAA------------------------------------SQQRLAEITEMIHTASLLHDDVIDEADTRRGMQSVNKVFGSKLSILAGDFLLARSSICLARLRSLEAVELMSTAIEHLVKGEVMQMRHA---------DKSGAISP--------FEYYLRKNYYKTGSLMANSCKASLVLGD 297          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: A0A024U4S8_9STRA (Solanesyl diphosphate synthase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4S8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.440e-40
Identity = 104/254 (40.94%), Postives = 135/254 (53.15%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAE 762
            +P  +V++ +  +SANI+ +LGSDHPVLE V +YFF                                                                            SQ+RLAEITEMIH ASLLHDDVID+A+TRRG+ S N  FG+K++ILAGDFLLAR+S  LARLR L AVEL+ST IEHLVKGEV+QM +          +K G +S         F+ YLRK++YKTGSL+AN+ KA+++L +
Sbjct:   97 DPFALVKDSIVSVSANIKMILGSDHPVLEAVAKYFFENDGGKKIRPTMILLLSQAAEADRLAGQSTFPKSAEYIAA------------------------------------SQQRLAEITEMIHTASLLHDDVIDEADTRRGMQSVNKVFGSKLSILAGDFLLARSSICLARLRSLEAVELMSTAIEHLVKGEVMQMRHA---------DKSGAISP--------FEYYLRKNYYKTGSLMANSCKASLVLGD 297          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: A0A8K1CPQ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPQ7_PYTOL)

HSP 1 Score: 152 bits (385), Expect = 3.540e-40
Identity = 102/257 (39.69%), Postives = 132/257 (51.36%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAEDGE 771
            +P  +V+ EM  ++ +I+ +LGSDHPVL  V +YFF                                                                          + +Q+RLAEITEMIH ASLLHDDVID+A+TRRGVPS N  FG+K++ILAGDFLLAR+S  LARLR L A+EL+ST IEHLVKGEV+QM N   +                 S    F+ YLRK++YKTGSL+AN+ +AA+ L +  E
Sbjct:   89 DPFQLVQHEMVSVTESIKRILGSDHPVLSAVARYFFEHDGGKKVRPTMVLLVSMAAEAHRRAVGLPLPSTQSEEFT----------------------------------VAAQQRLAEITEMIHTASLLHDDVIDEADTRRGVPSVNKVFGDKLSILAGDFLLARSSICLARLRSLEAIELMSTAIEHLVKGEVMQMKNADGR-----------------SDITPFEYYLRKNYYKTGSLMANSCRAALALGKHDE 294          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: G4ZWZ2_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZWZ2_PHYSP)

HSP 1 Score: 152 bits (385), Expect = 6.410e-40
Identity = 101/257 (39.30%), Postives = 134/257 (52.14%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAEDGE 771
            +P  +VE++M  ++ +I+ +LGSDHPVLE V +YFF                                                                            +Q+RLAEITEMIH ASL+HDDVID+A+TRRG PS N  FG K+A+LAGDFLLAR+S +LARLR+L AVEL+ST IEHLVKGEV+QM N   + +                    F+ YLRK++YKTGSL++N+ KAA++L +  E
Sbjct:  104 DPFTLVEQDMVSVTESIKRILGSDHPVLEAVARYFFEHDGGKKVRPTMVLLVARTAEAHRRATGAPLPETQSEEYTRA----------------------------------AQQRLAEITEMIHTASLMHDDVIDEADTRRGRPSVNKVFGGKMAVLAGDFLLARSSVSLARLRNLEAVELMSTSIEHLVKGEVMQMKNADARDD-----------------ITPFEYYLRKNYYKTGSLMSNSCKAALVLGKHDE 309          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: A0A0P1AGZ3_PLAHL (Geranylgeranyl diphosphate synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGZ3_PLAHL)

HSP 1 Score: 151 bits (381), Expect = 1.380e-39
Identity = 101/257 (39.30%), Postives = 133/257 (51.75%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAEDGE 771
            +P  +V +++  ++ +I+ +LGSDHPVL  V +YFF                                                                          L +Q+RLAEITEMIH ASL+HDDVIDDAETRRG PS N  FG K+A+LAGDFLLAR+S +LARLR+L AVEL+ST IEHLVKGEV+QM N   + +                    F+ YLRK++YKTGSL++N+ KAA++L +  E
Sbjct:   90 DPFQLVAQDIVNVNDSIKRILGSDHPVLAAVARYFFEHDGGKKVRPTMVLLVSRAAEAHRRITSTPLPEMQSKEYT----------------------------------LAAQQRLAEITEMIHTASLMHDDVIDDAETRRGQPSVNKVFGGKMAVLAGDFLLARSSVSLARLRNLQAVELMSTSIEHLVKGEVMQMKNADTRDD-----------------ITPFEYYLRKNYYKTGSLMSNSCKAALVLGKHDE 295          
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Match: A0A1V9Z381_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z381_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.860e-39
Identity = 101/254 (39.76%), Postives = 135/254 (53.15%), Query Frame = 1
Query:    1 NPMGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFGNKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVGQKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLLAE 762
            +P  ++++++  +S +I+ +LGSDHPVLE V +YFF                                                                            SQ+RLAEITEMIH ASLLHDDVID+A+TRRG+ S N  FG+K++ILAGDFLLAR+S  LARLR L AVEL+ST IEHLVKGEV+QM +          +K G ++         F+ YLRK++YKTGSL+AN+ +AA++L E
Sbjct:   97 DPFELIKDKIVSVSESIKTILGSDHPVLEAVAKYFFENDGGKKIRPTMILLLSQAAEAARDVDNTDKSIEYISA--------------------------------------SQQRLAEITEMIHTASLLHDDVIDEADTRRGMKSVNKVFGSKLSILAGDFLLARSSICLARLRSLEAVELMSTAIEHLVKGEVMQMRHA---------DKNGQITP--------FEYYLRKNYYKTGSLMANSCRAALVLGE 295          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88354.20523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TXB8_9STRA1.220e-4343.46Decaprenyl-diphosphate synthase subunit 1 n=1 Tax=... [more]
B2ZWF4_9STRA5.300e-4240.86Polyprenyl synthetase (Fragment) n=1 Tax=Aphanomyc... [more]
W4H8F9_9STRA2.410e-4140.47Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A6G0XWT1_9STRA3.760e-4140.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024U4T7_9STRA6.690e-4140.94Solanesyl diphosphate synthase, variant n=1 Tax=Ap... [more]
A0A024U4S8_9STRA1.440e-4040.94Solanesyl diphosphate synthase n=5 Tax=Aphanomyces... [more]
A0A8K1CPQ7_PYTOL3.540e-4039.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4ZWZ2_PHYSP6.410e-4039.30Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A0P1AGZ3_PLAHL1.380e-3939.30Geranylgeranyl diphosphate synthase n=1 Tax=Plasmo... [more]
A0A1V9Z381_9STRA2.860e-3939.76Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88354contigM-pyrifera_M_contig88354:8..778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue3.1e-35
Seed eggNOG ortholog42099.EPrPV00000015014
Preferred nameGPPS
KEGG rclassRC00279
KEGG koko:K05355,ko:K14066
KEGG ReactionR01658,R09245,R09246
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00366
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016740,GO:0016765,GO:0022414,GO:0032501,GO:0032502,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050347,GO:0051186,GO:0051188,GO:0061458,GO:0071704,GO:1901576,GO:1901661,GO:1901663
EggNOG free text desc.Polyprenyl synthetase. Source PGD
EggNOG OGs1MDWQ@121069,COG0142@1,KOG0776@2759
EC2.5.1.1,2.5.1.82,2.5.1.83
COG Functional cat.H
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Exons1
Model size771
Cds size765
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.3996215-UTR-M-pyrifera_M_contig88354:7..131622816793.3996215-UTR-M-pyrifera_M_contig88354:7..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88354 8..13 +
1692278181.7608984-UTR-M-pyrifera_M_contig88354:7..131692278181.7608984-UTR-M-pyrifera_M_contig88354:7..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88354 8..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.4185216-CDS-M-pyrifera_M_contig88354:13..7781622816793.4185216-CDS-M-pyrifera_M_contig88354:13..778Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88354 14..778 +
1692278181.7757976-CDS-M-pyrifera_M_contig88354:13..7781692278181.7757976-CDS-M-pyrifera_M_contig88354:13..778Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88354 14..778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88354.20523.1prot_M-pyrifera_M_contig88354.20523.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88354 14..778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88354.20523.1

>prot_M-pyrifera_M_contig88354.20523.1 ID=prot_M-pyrifera_M_contig88354.20523.1|Name=mRNA_M-pyrifera_M_contig88354.20523.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
MGVVEEEMQQLSANIRGLLGSDHPVLETVGQYFFSEEGGGGKKVRPALVL
LMSAACSVGDDAASSLSPSSSSSLSPSSSSSSTSTPPSSTSSSSSSSSSS
GVSGGVVLLESQRRLAEITEMIHAASLLHDDVIDDAETRRGVPSANAQFG
NKVAILAGDFLLARASAALARLRHLGAVELLSTVIEHLVKGEVIQMANVG
QKREGEVEEKEGHLSSPSHSSSALFDAYLRKSFYKTGSLIANAAKAAVLL
AEDGE
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mRNA from alignment at M-pyrifera_M_contig88354:8..778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88354.20523.1 ID=mRNA_M-pyrifera_M_contig88354.20523.1|Name=mRNA_M-pyrifera_M_contig88354.20523.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig88354:8..778+ (Macrocystis pyrifera P11B4 male)
AATCCGATGGGAGTAGTGGAGGAAGAGATGCAGCAATTGAGTGCCAACAT TCGAGGCTTGTTGGGCTCTGATCACCCAGTGCTGGAAACAGTGGGACAGT ATTTCTTCTCCGAAGAAGGCGGTGGGGGAAAGAAGGTGAGGCCGGCGCTG GTTCTGCTCATGTCAGCAGCCTGTTCTGTCGGAGATGATGCAGCATCATC ATTATCACCTTCATCATCATCATCATTATCACCTTCATCATCATCATCAT CAACATCCACACCACCATCATCAACATCATCCTCATCCTCCTCCTCCTCC TCTTCCGGTGTTTCTGGTGGGGTGGTTTTGCTGGAGAGCCAGCGCCGCTT GGCGGAGATCACCGAGATGATCCACGCGGCATCCTTGCTGCACGACGACG TGATCGATGATGCGGAGACGAGGCGTGGTGTGCCTTCGGCGAATGCGCAG TTTGGGAACAAGGTGGCAATCTTGGCTGGGGATTTCTTGCTCGCTCGAGC ATCAGCAGCTCTGGCCAGACTGAGGCACTTGGGAGCTGTGGAGCTGCTTT CCACTGTCATCGAACACCTCGTGAAAGGAGAGGTCATCCAGATGGCAAAC GTTGGCCAGAAAAGAGAAGGGGAGGTGGAAGAGAAGGAAGGACACCTGTC GTCTCCATCACACTCTTCCTCCGCTCTCTTTGACGCCTACTTGCGAAAAT CGTTCTACAAAACTGGCTCTTTGATTGCAAACGCAGCAAAAGCAGCAGTT TTGCTCGCTGAAGATGGAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88354:8..778+

>mRNA_M-pyrifera_M_contig88354.20523.1 ID=mRNA_M-pyrifera_M_contig88354.20523.1|Name=mRNA_M-pyrifera_M_contig88354.20523.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig88354:8..778+ (Macrocystis pyrifera P11B4 male)
ATGGGAGTAGTGGAGGAAGAGATGCAGCAATTGAGTGCCAACATTCGAGG
CTTGTTGGGCTCTGATCACCCAGTGCTGGAAACAGTGGGACAGTATTTCT
TCTCCGAAGAAGGCGGTGGGGGAAAGAAGGTGAGGCCGGCGCTGGTTCTG
CTCATGTCAGCAGCCTGTTCTGTCGGAGATGATGCAGCATCATCATTATC
ACCTTCATCATCATCATCATTATCACCTTCATCATCATCATCATCAACAT
CCACACCACCATCATCAACATCATCCTCATCCTCCTCCTCCTCCTCTTCC
GGTGTTTCTGGTGGGGTGGTTTTGCTGGAGAGCCAGCGCCGCTTGGCGGA
GATCACCGAGATGATCCACGCGGCATCCTTGCTGCACGACGACGTGATCG
ATGATGCGGAGACGAGGCGTGGTGTGCCTTCGGCGAATGCGCAGTTTGGG
AACAAGGTGGCAATCTTGGCTGGGGATTTCTTGCTCGCTCGAGCATCAGC
AGCTCTGGCCAGACTGAGGCACTTGGGAGCTGTGGAGCTGCTTTCCACTG
TCATCGAACACCTCGTGAAAGGAGAGGTCATCCAGATGGCAAACGTTGGC
CAGAAAAGAGAAGGGGAGGTGGAAGAGAAGGAAGGACACCTGTCGTCTCC
ATCACACTCTTCCTCCGCTCTCTTTGACGCCTACTTGCGAAAATCGTTCT
ACAAAACTGGCTCTTTGATTGCAAACGCAGCAAAAGCAGCAGTTTTGCTC
GCTGAAGATGGAGAGATGGGAGTAGTGGAGGAAGAGATGCAGCAATTGAG
TGCCAACATTCGAGGCTTGTTGGGCTCTGATCACCCAGTGCTGGAAACAG
TGGGACAGTATTTCTTCTCCGAAGAAGGCGGTGGGGGAAAGAAGGTGAGG
CCGGCGCTGGTTCTGCTCATGTCAGCAGCCTGTTCTGTCGGAGATGATGC
AGCATCATCATTATCACCTTCATCATCATCATCATTATCACCTTCATCAT
CATCATCATCAACATCCACACCACCATCATCAACATCATCCTCATCCTCC
TCCTCCTCCTCTTCCGGTGTTTCTGGTGGGGTGGTTTTGCTGGAGAGCCA
GCGCCGCTTGGCGGAGATCACCGAGATGATCCACGCGGCATCCTTGCTGC
ACGACGACGTGATCGATGATGCGGAGACGAGGCGTGGTGTGCCTTCGGCG
AATGCGCAGTTTGGGAACAAGGTGGCAATCTTGGCTGGGGATTTCTTGCT
CGCTCGAGCATCAGCAGCTCTGGCCAGACTGAGGCACTTGGGAGCTGTGG
AGCTGCTTTCCACTGTCATCGAACACCTCGTGAAAGGAGAGGTCATCCAG
ATGGCAAACGTTGGCCAGAAAAGAGAAGGGGAGGTGGAAGAGAAGGAAGG
ACACCTGTCGTCTCCATCACACTCTTCCTCCGCTCTCTTTGACGCCTACT
TGCGAAAATCGTTCTACAAAACTGGCTCTTTGATTGCAAACGCAGCAAAA
GCAGCAGTTTTGCTCGCTGAAGATGGAGAG
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