mRNA_M-pyrifera_M_contig88349.20522.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88349.20522.1
Unique NamemRNA_M-pyrifera_M_contig88349.20522.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A2E0T4C4_9ACTN (DNA topoisomerase 1 n=10 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T4C4_9ACTN)

HSP 1 Score: 426 bits (1095), Expect = 2.400e-140
Identity = 219/273 (80.22%), Postives = 240/273 (87.91%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEESVAQ 819
            R+VVERERERMAF+ A YWD+KG FAAA+G  +   EF+AAL  IDGVRLASGRDFGDDG L+RDDV VLDEAGA  LVG L+GVPYEVR+RE+KPYRRRPAAPFITST+QQEAG KLG+S+ MAMRAAQGLYEKG+ITYMRTDSTTLSDTALQAARTMISERYG +FLPDA RHY  KSKNAQEAHEAIRPAGDTFRLP EVA EVP SEAR YELIW+R VASQMTDCTGETV L+LGAT+  G+DVEF+ASGTVI H GFREVYEE+  Q
Sbjct:  188 RIVVERERERMAFIEASYWDVKGTFAAAQG--DDQREFSAALNTIDGVRLASGRDFGDDGRLARDDVTVLDEAGAQALVGALDGVPYEVRARETKPYRRRPAAPFITSTYQQEAGRKLGMSAQMAMRAAQGLYEKGYITYMRTDSTTLSDTALQAARTMISERYGTDFLPDAPRHYATKSKNAQEAHEAIRPAGDTFRLPAEVAQEVPQSEARAYELIWQRAVASQMTDCTGETVTLKLGATAHDGRDVEFAASGTVIAHMGFREVYEETKVQ 458          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A7K1ZB63_9ACTN (DNA topoisomerase 1 n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZB63_9ACTN)

HSP 1 Score: 398 bits (1023), Expect = 8.590e-130
Identity = 205/270 (75.93%), Postives = 233/270 (86.30%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEES 810
            R+VV+RERERM F +A YW + G FAA  G    + EF+A+LA IDGV+LASGRDFGDDG L+R+DV VLDE+ A+ LVG+LE VPYEVRSRE+KPYRRRPAAPFITST+QQEAG KL +S+ MAMRAAQGLYEKG+ITYMRTDSTTLS+TALQAAR  I  RYG ++LPD+ R YTKKSKNAQEAHEAIRPAG++FR P+EVA+EVP SEAR YELIWKRTVASQMTDCTGETVQLRLGATS  G +V FSASGTVI HRGFREVYEE+
Sbjct:  189 RIVVQRERERMDFRAASYWSVSGTFAAVSG---DTREFSASLASIDGVKLASGRDFGDDGRLAREDVRVLDESAASKLVGELERVPYEVRSREAKPYRRRPAAPFITSTYQQEAGRKLKMSAQMAMRAAQGLYEKGYITYMRTDSTTLSETALQAARATIKNRYGTQYLPDSPRRYTKKSKNAQEAHEAIRPAGESFRSPEEVASEVPSSEARAYELIWKRTVASQMTDCTGETVQLRLGATSRSGSEVVFSASGTVISHRGFREVYEET 455          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A3M2GQ16_ACTSX (DNA topoisomerase (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GQ16_ACTSX)

HSP 1 Score: 356 bits (913), Expect = 1.100e-113
Identity = 192/269 (71.38%), Postives = 218/269 (81.04%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807
            R++VERERER+AFV A YW +   FAAA+ A   +  F A+L  +DG R+A+GRDFG DG  SRDDVVVL+   A  LV DL+GV   VRSRE++PYRRRPAAPFITSTFQQEAG KL +S+A AMRAAQ LYEKG+ITYMRTDSTTLSDTAL+AAR +I+ER+G E LPDA R YT+K KNAQEAHEAIRPAGDTFR P EVA EVP +EARVYELIW+RTVASQM D TGETVQLRLGAT+  G+DVEFSASGTVI   GFR VY E
Sbjct:  206 RIIVERERERIAFVPAEYWSLTATFAAADDA--EARPFDASLVALDGTRVATGRDFGADGRPSRDDVVVLEGDTARALVDDLDGVEVAVRSREARPYRRRPAAPFITSTFQQEAGRKLRMSAAAAMRAAQSLYEKGYITYMRTDSTTLSDTALRAARAVIAERFGVENLPDAPRTYTRKVKNAQEAHEAIRPAGDTFRSPAEVAREVPPAEARVYELIWQRTVASQMVDATGETVQLRLGATTRSGRDVEFSASGTVITRPGFRLVYVE 472          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A520Y072_9ACTN (DNA topoisomerase 1 n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y072_9ACTN)

HSP 1 Score: 345 bits (885), Expect = 2.380e-109
Identity = 184/270 (68.15%), Postives = 214/270 (79.26%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGA-AESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807
            R+VVERERERMAFV A YWD++G+F+  +   A   + F+A L +ID  R+ASG+DF D G  ++D+VVVL E+ ATTLV  LEG  +EVRS E KPYRRRPAAPF+T+TFQQEAG KL LSSAMAMR AQGLYEKG+ITYMRTDSTTLS TAL AAR +I + YG+ F+P   R Y  KSKNAQEAHEAIRPAGDTF+ P EVA EVP SEA VYELIWKRTVASQMTD TGET+  R+G T+S G+DV FSASGT+I H+GFR VY E
Sbjct:  185 RIVVERERERMAFVRASYWDLEGRFSVTKDVPAGEPTSFSAKLLEIDSARVASGKDFDDTGR-AKDNVVVLGESDATTLVSALEGASFEVRSVEPKPYRRRPAAPFMTATFQQEAGRKLKLSSAMAMRGAQGLYEKGYITYMRTDSTTLSATALSAARDVIKKEYGENFMPAEPRIYATKSKNAQEAHEAIRPAGDTFKSPAEVAREVPKSEAAVYELIWKRTVASQMTDATGETISARVGTTASDGRDVVFSASGTIISHQGFRRVYVE 453          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A6B1EA69_9ACTN (DNA topoisomerase 1 n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EA69_9ACTN)

HSP 1 Score: 336 bits (862), Expect = 3.590e-106
Identity = 175/269 (65.06%), Postives = 206/269 (76.58%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807
            R+VVERERERM+FVSA +W +   FA  +   E   EFTAALA +DG R+A+ RDFG DG  +R D+ VLDEAGA TLV DL    + VRSR SKPYRRRPA PFITST QQEA  KLG+SSA AMR AQ LYEKG+ITYMRTDST+LS  A+ AAR+ ++ RYG++ LP   R Y  K KNAQEAHEA+RPAG+ F  P  VA +VP  EAR+Y+L+WKRT+ASQMTDCTGETVQLR+GA +S G+D EF+ASGTVI H GFREVY E
Sbjct:  186 RIVVERERERMSFVSASFWGLTATFAPRD---EQGPEFTAALASLDGSRVATARDFGPDGRATRSDLTVLDEAGAATLVADLHDSDFAVRSRTSKPYRRRPAPPFITSTLQQEAARKLGMSSAAAMRTAQSLYEKGYITYMRTDSTSLSSAAVAAARSEVASRYGQDLLPAKPRTYASKVKNAQEAHEAVRPAGEAFADPRTVAQQVPQPEARLYDLVWKRTLASQMTDCTGETVQLRVGARTSTGRDAEFAASGTVITHMGFREVYTE 451          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: UPI001E494DA7 (type I DNA topoisomerase n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=UPI001E494DA7)

HSP 1 Score: 337 bits (863), Expect = 7.010e-106
Identity = 180/269 (66.91%), Postives = 208/269 (77.32%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807
            R+VVERERERMAFV+AGYWD+ G FA  EG  E   + TA L  +DG R+A+GRDF   G ++ D VV LDEA AT+L   L      VRS ES+PYRRRPAAPF+TST+QQEAG KL +SSA AMRAAQ LYE+G+ITYMRTDSTTLS+TAL AART I ER+G +FLPDA RHYTKK KNAQEAHEAIRPAGD FR P EVA EV  +EAR YE+IW RT+ASQMTD  GETV +RLG  ++ G+D EFS +GTVI H+GFR VY E
Sbjct:  186 RIVVERERERMAFVAAGYWDLDGVFAPREGDDER-PDVTATLVAVDGARVATGRDFDSSGQVA-DGVVRLDEAAATSLADGLRDAEVTVRSVESRPYRRRPAAPFMTSTYQQEAGRKLRMSSAQAMRAAQTLYEQGYITYMRTDSTTLSETALNAARTEIGERFGTQFLPDAPRHYTKKVKNAQEAHEAIRPAGDRFRPPAEVAQEVGPAEARAYEMIWNRTIASQMTDAVGETVVVRLGGVATDGRDAEFSTTGTVITHQGFRRVYVE 452          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A6B0WHB1_9ACTN (DNA topoisomerase 1 n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WHB1_9ACTN)

HSP 1 Score: 334 bits (856), Expect = 3.000e-105
Identity = 177/272 (65.07%), Postives = 210/272 (77.21%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSS---EFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807
            R+VVERER+RM FVSAG+W + G FA A G+A+ +S   EFTA L Q+DG R+A+ RDFG DG  +R DV VL+EA A +LV DL+   + VR+R SKPYRRRPAAPFITST QQEA  KL ++SA AMR AQ LYEKG+ITYMRTDST+LS  A+ AAR+ +  RYG   LP   R Y  + KNAQEAHEAIRPAGDTF  P  VA+++P  EAR+YEL+WKRT+ASQMTDCTGETVQLRLGA S+ G+D EF+ASGTVI H GFREVY E
Sbjct:  186 RIVVERERQRMDFVSAGFWGLTGTFAPA-GSADGNSNGTEFTADLVQLDGARIAAARDFGSDGQPTRGDVTVLNEAAAMSLVSDLQDAAFAVRARTSKPYRRRPAAPFITSTMQQEAARKLHMTSAAAMRTAQSLYEKGYITYMRTDSTSLSADAVAAARSEVERRYGSSVLPPEPRAYASRVKNAQEAHEAIRPAGDTFADPSTVADQLPPPEARLYELVWKRTLASQMTDCTGETVQLRLGARSASGRDAEFAASGTVITHLGFREVYTE 456          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A538CTI9_9ACTN (DNA topoisomerase 1 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CTI9_9ACTN)

HSP 1 Score: 330 bits (846), Expect = 1.690e-103
Identity = 178/273 (65.20%), Postives = 205/273 (75.09%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQF--AAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEESV 813
            R+VVERERERM FVSA YWD+   F      G  E  S F A L  +DG R+A+GRDF  DG +  DDVVVL EA A  LV DL    + V S ESKPYRRRPAAPF+TSTFQQEA  KL LSSA AMR AQ LYEKG+ITYMRTDSTTLSDTA+ AAR++ISERYG+++LPD  RHY  K KNAQEAHEAIRPAG+TFRLP++VA E+P +EARVYELIW+RTVASQMTD  GETV +R+G  +   +  EFSA+GT+I H GFR  Y E V
Sbjct:  199 RIVVERERERMRFVSARYWDLSATFHKIGQLGDGEPRS-FEATLTGLDGKRVATGRDFDSDGKIKSDDVVVLGEAAAAELVTDLADTNFSVNSVESKPYRRRPAAPFMTSTFQQEASRKLRLSSAHAMRYAQSLYEKGYITYMRTDSTTLSDTAVAAARSIISERYGRDYLPDGPRHYASKVKNAQEAHEAIRPAGETFRLPEQVARELPTTEARVYELIWQRTVASQMTDAVGETVVVRVGGDTRTRRAAEFSATGTIITHAGFRRAYVEDV 470          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A351KA78_9ACTN (DNA topoisomerase (Fragment) n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A351KA78_9ACTN)

HSP 1 Score: 324 bits (831), Expect = 2.870e-103
Identity = 176/276 (63.77%), Postives = 202/276 (73.19%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRL----GATSSG-GKDVEFSASGTVIQHRGFREVYEESV 813
            R+VVERERERM F++AGYWD+    A    A   +  FT  L  +DG R+ASGRDFGDDG  SRDDV VLDE  A  L   L G P  V S E KPYRRRPAAPFITST QQEAG KL LS+++AM AAQGLY+KG+ITYMRTDSTTLSDTA+ AAR ++ ER+G + LPDA R Y  K +NAQEAHEAIRPAGD FR PD+VA E+  SEAR+YE+IW+RTVASQMTD  GETV++ L    G    G   DV FSASGTVI H+GFR VY E V
Sbjct:  201 RIVVERERERMQFMAAGYWDLTATVA---DAGTDTGSFTTRLVAVDGTRVASGRDFGDDGRPSRDDVRVLDEVAAGALTAGLVGRPLAVASVEPKPYRRRPAAPFITSTLQQEAGRKLRLSASLAMHAAQGLYQKGYITYMRTDSTTLSDTAISAARAVVRERFGADHLPDAPRTYANKVRNAQEAHEAIRPAGDRFRHPDDVAGELSKSEARIYEMIWQRTVASQMTDAVGETVRITLTGEVGPDGGGVASDVTFSASGTVISHQGFRRVYREDV 473          
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A7Y2DLW5_9ACTN (DNA topoisomerase (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DLW5_9ACTN)

HSP 1 Score: 325 bits (834), Expect = 2.730e-101
Identity = 175/274 (63.87%), Postives = 210/274 (76.64%), Query Frame = 1
Query:    1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSL---SRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEESV 813
            R+VVERERERMAFVS+ YWD+   F A +GA      FTA + ++DG R+A G+DF D G L   ++++++ LDEAGAT LV  +EG    V SRE+KPYRRRPAAPFITST+QQEAG KL LSSA AMR AQGLYE+GFITYMRTDS TLSD A+ AAR+ I+ER+G EFLPDA R Y  KSK+AQEAHEAIRPAGDTFR P++VA+E+   + +VYELIW+RTVASQMTD TGETV LRLG  ++  +   FS SGTVI H GF +VY E V
Sbjct:  243 RIVVERERERMAFVSSNYWDLTATFTA-DGAER---PFTAKILEVDGARIAGGKDFNDAGQLKTGTKNELLHLDEAGATRLVQGVEGQDASVESREAKPYRRRPAAPFITSTYQQEAGRKLRLSSAQAMRVAQGLYERGFITYMRTDSVTLSDQAVGAARSQIAERFGTEFLPDAPRTYKGKSKSAQEAHEAIRPAGDTFRTPEQVASELSTQDLKVYELIWQRTVASQMTDATGETVTLRLGVHTTDDRHAVFSTSGTVIMHPGFLKVYREDV 512          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0T4C4_9ACTN2.400e-14080.22DNA topoisomerase 1 n=10 Tax=Acidimicrobiaceae bac... [more]
A0A7K1ZB63_9ACTN8.590e-13075.93DNA topoisomerase 1 n=2 Tax=Acidimicrobiaceae bact... [more]
A0A3M2GQ16_ACTSX1.100e-11371.38DNA topoisomerase (Fragment) n=1 Tax=Actinomyces s... [more]
A0A520Y072_9ACTN2.380e-10968.15DNA topoisomerase 1 n=2 Tax=Acidimicrobiales bacte... [more]
A0A6B1EA69_9ACTN3.590e-10665.06DNA topoisomerase 1 n=2 Tax=Acidimicrobiaceae bact... [more]
UPI001E494DA77.010e-10666.91type I DNA topoisomerase n=1 Tax=Actinomarinicola ... [more]
A0A6B0WHB1_9ACTN3.000e-10565.07DNA topoisomerase 1 n=9 Tax=Acidimicrobiaceae bact... [more]
A0A538CTI9_9ACTN1.690e-10365.20DNA topoisomerase 1 n=1 Tax=Actinomycetia bacteriu... [more]
A0A351KA78_9ACTN2.870e-10363.77DNA topoisomerase (Fragment) n=3 Tax=Acidimicrobii... [more]
A0A7Y2DLW5_9ACTN2.730e-10163.87DNA topoisomerase (Fragment) n=1 Tax=Acidimicrobia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88349contigM-pyrifera_M_contig88349:3..821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score293.5
Seed ortholog evalue9.8e-77
Seed eggNOG ortholog1306174.JODP01000001_gene5337
Preferred nametopA
KEGG koko:K03168
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
EggNOG OGs2GJU7@201174,COG0550@1,COG0550@2
EC5.99.1.2
COG Functional cat.L
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons1
Model size819
Cds size789
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.3497124-UTR-M-pyrifera_M_contig88349:2..321622816793.3497124-UTR-M-pyrifera_M_contig88349:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88349 3..32 +
1692278181.7293358-UTR-M-pyrifera_M_contig88349:2..321692278181.7293358-UTR-M-pyrifera_M_contig88349:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88349 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.362927-CDS-M-pyrifera_M_contig88349:32..8211622816793.362927-CDS-M-pyrifera_M_contig88349:32..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88349 33..821 +
1692278181.7423706-CDS-M-pyrifera_M_contig88349:32..8211692278181.7423706-CDS-M-pyrifera_M_contig88349:32..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88349 33..821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88349.20522.1prot_M-pyrifera_M_contig88349.20522.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88349 33..821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88349.20522.1

>prot_M-pyrifera_M_contig88349.20522.1 ID=prot_M-pyrifera_M_contig88349.20522.1|Name=mRNA_M-pyrifera_M_contig88349.20522.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=263bp
MAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDG
SLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTF
QQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMI
SERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPIS
EARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQH
RGFREVYEESVAQ
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mRNA from alignment at M-pyrifera_M_contig88349:3..821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88349.20522.1 ID=mRNA_M-pyrifera_M_contig88349.20522.1|Name=mRNA_M-pyrifera_M_contig88349.20522.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=819bp|location=Sequence derived from alignment at M-pyrifera_M_contig88349:3..821+ (Macrocystis pyrifera P11B4 male)
CGCCTCGTTGTCGAGCGAGAACGCGAACGCATGGCGTTCGTGTCGGCCGG CTATTGGGACATCAAGGGCCAGTTCGCCGCCGCCGAGGGCGCAGCCGAGA GTTCCTCGGAGTTCACCGCGGCGCTCGCCCAGATCGACGGTGTCCGCCTC GCCAGCGGTCGCGACTTCGGCGACGACGGCTCGCTCTCTCGCGACGACGT GGTCGTGCTCGACGAGGCCGGGGCCACCACCCTGGTCGGCGATCTCGAGG GCGTGCCCTACGAGGTCCGCTCACGCGAATCGAAGCCCTACCGGCGCCGT CCGGCCGCCCCCTTCATCACCTCGACCTTCCAGCAGGAAGCCGGTAACAA GCTCGGCCTCTCCTCGGCGATGGCCATGCGGGCCGCCCAGGGTCTCTACG AAAAGGGCTTCATCACCTATATGCGAACCGACAGCACCACGCTGTCCGAC ACCGCGCTCCAGGCCGCCCGCACCATGATCTCCGAGCGCTACGGCAAGGA ATTCCTTCCTGACGCGGCGCGGCACTACACCAAGAAGTCGAAGAACGCGC AGGAAGCCCACGAGGCCATCCGTCCGGCCGGCGACACCTTCCGCCTCCCC GACGAGGTGGCCAACGAGGTCCCGATCTCCGAGGCGCGGGTCTACGAACT CATCTGGAAGCGCACCGTGGCTTCGCAGATGACCGACTGCACCGGCGAGA CCGTGCAGCTGCGTCTCGGCGCCACCAGCTCCGGCGGCAAGGACGTCGAG TTCAGCGCCTCCGGCACCGTGATCCAGCATCGCGGCTTCCGTGAGGTCTA CGAGGAATCGGTGGCCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88349:3..821+

>mRNA_M-pyrifera_M_contig88349.20522.1 ID=mRNA_M-pyrifera_M_contig88349.20522.1|Name=mRNA_M-pyrifera_M_contig88349.20522.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1578bp|location=Sequence derived from alignment at M-pyrifera_M_contig88349:3..821+ (Macrocystis pyrifera P11B4 male)
ATGGCGTTCGTGTCGGCCGGCTATTGGGACATCAAGGGCCAGTTCGCCGC
CGCCGAGGGCGCAGCCGAGAGTTCCTCGGAGTTCACCGCGGCGCTCGCCC
AGATCGACGGTGTCCGCCTCGCCAGCGGTCGCGACTTCGGCGACGACGGC
TCGCTCTCTCGCGACGACGTGGTCGTGCTCGACGAGGCCGGGGCCACCAC
CCTGGTCGGCGATCTCGAGGGCGTGCCCTACGAGGTCCGCTCACGCGAAT
CGAAGCCCTACCGGCGCCGTCCGGCCGCCCCCTTCATCACCTCGACCTTC
CAGCAGGAAGCCGGTAACAAGCTCGGCCTCTCCTCGGCGATGGCCATGCG
GGCCGCCCAGGGTCTCTACGAAAAGGGCTTCATCACCTATATGCGAACCG
ACAGCACCACGCTGTCCGACACCGCGCTCCAGGCCGCCCGCACCATGATC
TCCGAGCGCTACGGCAAGGAATTCCTTCCTGACGCGGCGCGGCACTACAC
CAAGAAGTCGAAGAACGCGCAGGAAGCCCACGAGGCCATCCGTCCGGCCG
GCGACACCTTCCGCCTCCCCGACGAGGTGGCCAACGAGGTCCCGATCTCC
GAGGCGCGGGTCTACGAACTCATCTGGAAGCGCACCGTGGCTTCGCAGAT
GACCGACTGCACCGGCGAGACCGTGCAGCTGCGTCTCGGCGCCACCAGCT
CCGGCGGCAAGGACGTCGAGTTCAGCGCCTCCGGCACCGTGATCCAGCAT
CGCGGCTTCCGTGAGGTCTACGAGGAATCGGTGGCCCAGATGGCGTTCGT
GTCGGCCGGCTATTGGGACATCAAGGGCCAGTTCGCCGCCGCCGAGGGCG
CAGCCGAGAGTTCCTCGGAGTTCACCGCGGCGCTCGCCCAGATCGACGGT
GTCCGCCTCGCCAGCGGTCGCGACTTCGGCGACGACGGCTCGCTCTCTCG
CGACGACGTGGTCGTGCTCGACGAGGCCGGGGCCACCACCCTGGTCGGCG
ATCTCGAGGGCGTGCCCTACGAGGTCCGCTCACGCGAATCGAAGCCCTAC
CGGCGCCGTCCGGCCGCCCCCTTCATCACCTCGACCTTCCAGCAGGAAGC
CGGTAACAAGCTCGGCCTCTCCTCGGCGATGGCCATGCGGGCCGCCCAGG
GTCTCTACGAAAAGGGCTTCATCACCTATATGCGAACCGACAGCACCACG
CTGTCCGACACCGCGCTCCAGGCCGCCCGCACCATGATCTCCGAGCGCTA
CGGCAAGGAATTCCTTCCTGACGCGGCGCGGCACTACACCAAGAAGTCGA
AGAACGCGCAGGAAGCCCACGAGGCCATCCGTCCGGCCGGCGACACCTTC
CGCCTCCCCGACGAGGTGGCCAACGAGGTCCCGATCTCCGAGGCGCGGGT
CTACGAACTCATCTGGAAGCGCACCGTGGCTTCGCAGATGACCGACTGCA
CCGGCGAGACCGTGCAGCTGCGTCTCGGCGCCACCAGCTCCGGCGGCAAG
GACGTCGAGTTCAGCGCCTCCGGCACCGTGATCCAGCATCGCGGCTTCCG
TGAGGTCTACGAGGAATCGGTGGCCCAG
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