mRNA_M-pyrifera_M_contig88349.20522.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A2E0T4C4_9ACTN (DNA topoisomerase 1 n=10 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T4C4_9ACTN) HSP 1 Score: 426 bits (1095), Expect = 2.400e-140 Identity = 219/273 (80.22%), Postives = 240/273 (87.91%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEESVAQ 819 R+VVERERERMAF+ A YWD+KG FAAA+G + EF+AAL IDGVRLASGRDFGDDG L+RDDV VLDEAGA LVG L+GVPYEVR+RE+KPYRRRPAAPFITST+QQEAG KLG+S+ MAMRAAQGLYEKG+ITYMRTDSTTLSDTALQAARTMISERYG +FLPDA RHY KSKNAQEAHEAIRPAGDTFRLP EVA EVP SEAR YELIW+R VASQMTDCTGETV L+LGAT+ G+DVEF+ASGTVI H GFREVYEE+ Q Sbjct: 188 RIVVERERERMAFIEASYWDVKGTFAAAQG--DDQREFSAALNTIDGVRLASGRDFGDDGRLARDDVTVLDEAGAQALVGALDGVPYEVRARETKPYRRRPAAPFITSTYQQEAGRKLGMSAQMAMRAAQGLYEKGYITYMRTDSTTLSDTALQAARTMISERYGTDFLPDAPRHYATKSKNAQEAHEAIRPAGDTFRLPAEVAQEVPQSEARAYELIWQRAVASQMTDCTGETVTLKLGATAHDGRDVEFAASGTVIAHMGFREVYEETKVQ 458
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A7K1ZB63_9ACTN (DNA topoisomerase 1 n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZB63_9ACTN) HSP 1 Score: 398 bits (1023), Expect = 8.590e-130 Identity = 205/270 (75.93%), Postives = 233/270 (86.30%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEES 810 R+VV+RERERM F +A YW + G FAA G + EF+A+LA IDGV+LASGRDFGDDG L+R+DV VLDE+ A+ LVG+LE VPYEVRSRE+KPYRRRPAAPFITST+QQEAG KL +S+ MAMRAAQGLYEKG+ITYMRTDSTTLS+TALQAAR I RYG ++LPD+ R YTKKSKNAQEAHEAIRPAG++FR P+EVA+EVP SEAR YELIWKRTVASQMTDCTGETVQLRLGATS G +V FSASGTVI HRGFREVYEE+ Sbjct: 189 RIVVQRERERMDFRAASYWSVSGTFAAVSG---DTREFSASLASIDGVKLASGRDFGDDGRLAREDVRVLDESAASKLVGELERVPYEVRSREAKPYRRRPAAPFITSTYQQEAGRKLKMSAQMAMRAAQGLYEKGYITYMRTDSTTLSETALQAARATIKNRYGTQYLPDSPRRYTKKSKNAQEAHEAIRPAGESFRSPEEVASEVPSSEARAYELIWKRTVASQMTDCTGETVQLRLGATSRSGSEVVFSASGTVISHRGFREVYEET 455
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A3M2GQ16_ACTSX (DNA topoisomerase (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GQ16_ACTSX) HSP 1 Score: 356 bits (913), Expect = 1.100e-113 Identity = 192/269 (71.38%), Postives = 218/269 (81.04%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807 R++VERERER+AFV A YW + FAAA+ A + F A+L +DG R+A+GRDFG DG SRDDVVVL+ A LV DL+GV VRSRE++PYRRRPAAPFITSTFQQEAG KL +S+A AMRAAQ LYEKG+ITYMRTDSTTLSDTAL+AAR +I+ER+G E LPDA R YT+K KNAQEAHEAIRPAGDTFR P EVA EVP +EARVYELIW+RTVASQM D TGETVQLRLGAT+ G+DVEFSASGTVI GFR VY E Sbjct: 206 RIIVERERERIAFVPAEYWSLTATFAAADDA--EARPFDASLVALDGTRVATGRDFGADGRPSRDDVVVLEGDTARALVDDLDGVEVAVRSREARPYRRRPAAPFITSTFQQEAGRKLRMSAAAAMRAAQSLYEKGYITYMRTDSTTLSDTALRAARAVIAERFGVENLPDAPRTYTRKVKNAQEAHEAIRPAGDTFRSPAEVAREVPPAEARVYELIWQRTVASQMVDATGETVQLRLGATTRSGRDVEFSASGTVITRPGFRLVYVE 472
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A520Y072_9ACTN (DNA topoisomerase 1 n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y072_9ACTN) HSP 1 Score: 345 bits (885), Expect = 2.380e-109 Identity = 184/270 (68.15%), Postives = 214/270 (79.26%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGA-AESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807 R+VVERERERMAFV A YWD++G+F+ + A + F+A L +ID R+ASG+DF D G ++D+VVVL E+ ATTLV LEG +EVRS E KPYRRRPAAPF+T+TFQQEAG KL LSSAMAMR AQGLYEKG+ITYMRTDSTTLS TAL AAR +I + YG+ F+P R Y KSKNAQEAHEAIRPAGDTF+ P EVA EVP SEA VYELIWKRTVASQMTD TGET+ R+G T+S G+DV FSASGT+I H+GFR VY E Sbjct: 185 RIVVERERERMAFVRASYWDLEGRFSVTKDVPAGEPTSFSAKLLEIDSARVASGKDFDDTGR-AKDNVVVLGESDATTLVSALEGASFEVRSVEPKPYRRRPAAPFMTATFQQEAGRKLKLSSAMAMRGAQGLYEKGYITYMRTDSTTLSATALSAARDVIKKEYGENFMPAEPRIYATKSKNAQEAHEAIRPAGDTFKSPAEVAREVPKSEAAVYELIWKRTVASQMTDATGETISARVGTTASDGRDVVFSASGTIISHQGFRRVYVE 453
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A6B1EA69_9ACTN (DNA topoisomerase 1 n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EA69_9ACTN) HSP 1 Score: 336 bits (862), Expect = 3.590e-106 Identity = 175/269 (65.06%), Postives = 206/269 (76.58%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807 R+VVERERERM+FVSA +W + FA + E EFTAALA +DG R+A+ RDFG DG +R D+ VLDEAGA TLV DL + VRSR SKPYRRRPA PFITST QQEA KLG+SSA AMR AQ LYEKG+ITYMRTDST+LS A+ AAR+ ++ RYG++ LP R Y K KNAQEAHEA+RPAG+ F P VA +VP EAR+Y+L+WKRT+ASQMTDCTGETVQLR+GA +S G+D EF+ASGTVI H GFREVY E Sbjct: 186 RIVVERERERMSFVSASFWGLTATFAPRD---EQGPEFTAALASLDGSRVATARDFGPDGRATRSDLTVLDEAGAATLVADLHDSDFAVRSRTSKPYRRRPAPPFITSTLQQEAARKLGMSSAAAMRTAQSLYEKGYITYMRTDSTSLSSAAVAAARSEVASRYGQDLLPAKPRTYASKVKNAQEAHEAVRPAGEAFADPRTVAQQVPQPEARLYDLVWKRTLASQMTDCTGETVQLRVGARTSTGRDAEFAASGTVITHMGFREVYTE 451
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: UPI001E494DA7 (type I DNA topoisomerase n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=UPI001E494DA7) HSP 1 Score: 337 bits (863), Expect = 7.010e-106 Identity = 180/269 (66.91%), Postives = 208/269 (77.32%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807 R+VVERERERMAFV+AGYWD+ G FA EG E + TA L +DG R+A+GRDF G ++ D VV LDEA AT+L L VRS ES+PYRRRPAAPF+TST+QQEAG KL +SSA AMRAAQ LYE+G+ITYMRTDSTTLS+TAL AART I ER+G +FLPDA RHYTKK KNAQEAHEAIRPAGD FR P EVA EV +EAR YE+IW RT+ASQMTD GETV +RLG ++ G+D EFS +GTVI H+GFR VY E Sbjct: 186 RIVVERERERMAFVAAGYWDLDGVFAPREGDDER-PDVTATLVAVDGARVATGRDFDSSGQVA-DGVVRLDEAAATSLADGLRDAEVTVRSVESRPYRRRPAAPFMTSTYQQEAGRKLRMSSAQAMRAAQTLYEQGYITYMRTDSTTLSETALNAARTEIGERFGTQFLPDAPRHYTKKVKNAQEAHEAIRPAGDRFRPPAEVAQEVGPAEARAYEMIWNRTIASQMTDAVGETVVVRLGGVATDGRDAEFSTTGTVITHQGFRRVYVE 452
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A6B0WHB1_9ACTN (DNA topoisomerase 1 n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WHB1_9ACTN) HSP 1 Score: 334 bits (856), Expect = 3.000e-105 Identity = 177/272 (65.07%), Postives = 210/272 (77.21%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSS---EFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEE 807 R+VVERER+RM FVSAG+W + G FA A G+A+ +S EFTA L Q+DG R+A+ RDFG DG +R DV VL+EA A +LV DL+ + VR+R SKPYRRRPAAPFITST QQEA KL ++SA AMR AQ LYEKG+ITYMRTDST+LS A+ AAR+ + RYG LP R Y + KNAQEAHEAIRPAGDTF P VA+++P EAR+YEL+WKRT+ASQMTDCTGETVQLRLGA S+ G+D EF+ASGTVI H GFREVY E Sbjct: 186 RIVVERERQRMDFVSAGFWGLTGTFAPA-GSADGNSNGTEFTADLVQLDGARIAAARDFGSDGQPTRGDVTVLNEAAAMSLVSDLQDAAFAVRARTSKPYRRRPAAPFITSTMQQEAARKLHMTSAAAMRTAQSLYEKGYITYMRTDSTSLSADAVAAARSEVERRYGSSVLPPEPRAYASRVKNAQEAHEAIRPAGDTFADPSTVADQLPPPEARLYELVWKRTLASQMTDCTGETVQLRLGARSASGRDAEFAASGTVITHLGFREVYTE 456
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A538CTI9_9ACTN (DNA topoisomerase 1 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CTI9_9ACTN) HSP 1 Score: 330 bits (846), Expect = 1.690e-103 Identity = 178/273 (65.20%), Postives = 205/273 (75.09%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQF--AAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEESV 813 R+VVERERERM FVSA YWD+ F G E S F A L +DG R+A+GRDF DG + DDVVVL EA A LV DL + V S ESKPYRRRPAAPF+TSTFQQEA KL LSSA AMR AQ LYEKG+ITYMRTDSTTLSDTA+ AAR++ISERYG+++LPD RHY K KNAQEAHEAIRPAG+TFRLP++VA E+P +EARVYELIW+RTVASQMTD GETV +R+G + + EFSA+GT+I H GFR Y E V Sbjct: 199 RIVVERERERMRFVSARYWDLSATFHKIGQLGDGEPRS-FEATLTGLDGKRVATGRDFDSDGKIKSDDVVVLGEAAAAELVTDLADTNFSVNSVESKPYRRRPAAPFMTSTFQQEASRKLRLSSAHAMRYAQSLYEKGYITYMRTDSTTLSDTAVAAARSIISERYGRDYLPDGPRHYASKVKNAQEAHEAIRPAGETFRLPEQVARELPTTEARVYELIWQRTVASQMTDAVGETVVVRVGGDTRTRRAAEFSATGTIITHAGFRRAYVEDV 470
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A351KA78_9ACTN (DNA topoisomerase (Fragment) n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A351KA78_9ACTN) HSP 1 Score: 324 bits (831), Expect = 2.870e-103 Identity = 176/276 (63.77%), Postives = 202/276 (73.19%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSLSRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRL----GATSSG-GKDVEFSASGTVIQHRGFREVYEESV 813 R+VVERERERM F++AGYWD+ A A + FT L +DG R+ASGRDFGDDG SRDDV VLDE A L L G P V S E KPYRRRPAAPFITST QQEAG KL LS+++AM AAQGLY+KG+ITYMRTDSTTLSDTA+ AAR ++ ER+G + LPDA R Y K +NAQEAHEAIRPAGD FR PD+VA E+ SEAR+YE+IW+RTVASQMTD GETV++ L G G DV FSASGTVI H+GFR VY E V Sbjct: 201 RIVVERERERMQFMAAGYWDLTATVA---DAGTDTGSFTTRLVAVDGTRVASGRDFGDDGRPSRDDVRVLDEVAAGALTAGLVGRPLAVASVEPKPYRRRPAAPFITSTLQQEAGRKLRLSASLAMHAAQGLYQKGYITYMRTDSTTLSDTAISAARAVVRERFGADHLPDAPRTYANKVRNAQEAHEAIRPAGDRFRHPDDVAGELSKSEARIYEMIWQRTVASQMTDAVGETVRITLTGEVGPDGGGVASDVTFSASGTVISHQGFRRVYREDV 473
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Match: A0A7Y2DLW5_9ACTN (DNA topoisomerase (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DLW5_9ACTN) HSP 1 Score: 325 bits (834), Expect = 2.730e-101 Identity = 175/274 (63.87%), Postives = 210/274 (76.64%), Query Frame = 1 Query: 1 RLVVERERERMAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGSL---SRDDVVVLDEAGATTLVGDLEGVPYEVRSRESKPYRRRPAAPFITSTFQQEAGNKLGLSSAMAMRAAQGLYEKGFITYMRTDSTTLSDTALQAARTMISERYGKEFLPDAARHYTKKSKNAQEAHEAIRPAGDTFRLPDEVANEVPISEARVYELIWKRTVASQMTDCTGETVQLRLGATSSGGKDVEFSASGTVIQHRGFREVYEESV 813 R+VVERERERMAFVS+ YWD+ F A +GA FTA + ++DG R+A G+DF D G L ++++++ LDEAGAT LV +EG V SRE+KPYRRRPAAPFITST+QQEAG KL LSSA AMR AQGLYE+GFITYMRTDS TLSD A+ AAR+ I+ER+G EFLPDA R Y KSK+AQEAHEAIRPAGDTFR P++VA+E+ + +VYELIW+RTVASQMTD TGETV LRLG ++ + FS SGTVI H GF +VY E V Sbjct: 243 RIVVERERERMAFVSSNYWDLTATFTA-DGAER---PFTAKILEVDGARIAGGKDFNDAGQLKTGTKNELLHLDEAGATRLVQGVEGQDASVESREAKPYRRRPAAPFITSTYQQEAGRKLRLSSAQAMRVAQGLYERGFITYMRTDSVTLSDQAVGAARSQIAERFGTEFLPDAPRTYKGKSKSAQEAHEAIRPAGDTFRTPEQVASELSTQDLKVYELIWQRTVASQMTDATGETVTLRLGVHTTDDRHAVFSTSGTVIMHPGFLKVYREDV 512 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88349.20522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig88349.20522.1 >prot_M-pyrifera_M_contig88349.20522.1 ID=prot_M-pyrifera_M_contig88349.20522.1|Name=mRNA_M-pyrifera_M_contig88349.20522.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=263bp MAFVSAGYWDIKGQFAAAEGAAESSSEFTAALAQIDGVRLASGRDFGDDGback to top mRNA from alignment at M-pyrifera_M_contig88349:3..821+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig88349.20522.1 ID=mRNA_M-pyrifera_M_contig88349.20522.1|Name=mRNA_M-pyrifera_M_contig88349.20522.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=819bp|location=Sequence derived from alignment at M-pyrifera_M_contig88349:3..821+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig88349:3..821+ >mRNA_M-pyrifera_M_contig88349.20522.1 ID=mRNA_M-pyrifera_M_contig88349.20522.1|Name=mRNA_M-pyrifera_M_contig88349.20522.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1578bp|location=Sequence derived from alignment at M-pyrifera_M_contig88349:3..821+ (Macrocystis pyrifera P11B4 male)back to top |