mRNA_M-pyrifera_M_contig88344.20520.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88344.20520.1
Unique NamemRNA_M-pyrifera_M_contig88344.20520.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: D2VMC5_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VMC5_NAEGR)

HSP 1 Score: 62.0 bits (149), Expect = 8.480e-10
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    7 YIIVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVEEE 222
            + I +C +  C AF   Q  K R      KWKC+LCG++QS+ +VFA++++ KDLR +VQ+LN +RGE+E+E
Sbjct:    4 HAIFQCFN--CTAFSINQVTKNR------KWKCKLCGSQQSIRKVFANSNQPKDLRPIVQELNMKRGEIEQE 67          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: A0A6A5BTV8_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BTV8_NAEFO)

HSP 1 Score: 61.2 bits (147), Expect = 2.020e-9
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    7 YIIVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVEEE 222
            Y + +C    C AF   Q  K R      KWKC+LCG++QS+ ++FA++ + KDLR +VQ+ N +RGE+E+E
Sbjct:    5 YAVFQCYQ--CSAFSVNQITKNR------KWKCKLCGSQQSIRKIFATSHQPKDLRPIVQQFNEKRGEIEQE 68          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: UPI001CFCE7EF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCE7EF)

HSP 1 Score: 58.9 bits (141), Expect = 1.230e-8
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    7 YIIVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVEEE 222
            Y + +C    C AF   Q  K R      KWKC+LCG++QS+ +++A++ + KDLR +VQ+ N +RGE+E+E
Sbjct:    5 YAVFQCYQ--CSAFSVNQITKNR------KWKCKLCGSQQSIRKMYATSHQPKDLRPIVQQYNEKRGEIEQE 68          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: A0A2T9YQK6_9FUNG (Uncharacterized protein n=1 Tax=Furculomyces boomerangus TaxID=61424 RepID=A0A2T9YQK6_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 4.780e-8
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   13 IVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVE 216
            +++CA   CG F   Q+ K       +KW C++CG +QS+++VF  +  A + R++VQ+LNR RGE+E
Sbjct:    6 VLKCAFDQCGTFQVQQKKK------LSKWSCKVCGEKQSLIKVFFESSTAPECRKVVQELNRSRGELE 67          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: A0A7S3PL25_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PL25_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.120e-8
Identity = 28/73 (38.36%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 MRYIIVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVEE 219
            + YI+V+C  G C  F  +Q PK +      K+ CR+C  + S+ RV+AS+++A+++R + Q LN +RGE+E+
Sbjct:    2 VNYIVVQC--GECNVFQCIQAPKSK------KFLCRVCNEKNSLRRVYASSNKAREIRPICQLLNVKRGEIED 66          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: A0A1Y2C0C8_9FUNG (SP-RING-type domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C0C8_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 1.330e-6
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   13 IVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVE 216
            +VRC    C AF+  QE K        KW+C LCG++QSV +V+  +  A D R  VQ+LN RRGE E
Sbjct:    6 VVRCFQ--CSAFVVQQEKKSN------KWQCTLCGSKQSVTKVYFESHVAGDTRAAVQELNMRRGENE 65          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: A0A210R046_MIZYE (UPF0544 protein C5orf45-like n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R046_MIZYE)

HSP 1 Score: 51.6 bits (122), Expect = 7.950e-6
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   13 IVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVEE 219
            ++RC    C  F   Q  K      A KW C++CG +QSV++VF     A D R  VQKLN  RGE+E+
Sbjct:    7 VLRCYQ--CSTFQVHQVKK------AKKWSCKMCGEKQSVIKVFGRGAAAADCRHHVQKLNNLRGEIEQ 67          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: L1J5E1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5E1_GUITC)

HSP 1 Score: 50.8 bits (120), Expect = 1.370e-5
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    7 YIIVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVEE 219
            YI+V+C    CG F   QE K        K+ C +C  +QSV ++FA ++ A+D R++ Q+LN  RGEV E
Sbjct:    4 YIVVQCYQ--CGLFQVTQEKKSTN-----KFVCPVCNEKQSVRKIFAQSEIARDCRQVTQELNMTRGEVVE 67          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: UPI00035988A5 (uncharacterized protein LOC101846282 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035988A5)

HSP 1 Score: 49.7 bits (117), Expect = 3.770e-5
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 MRYIIVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVEEE 222
            + + +++CAD  C  F  +Q  K        KWKC+LCG++QSV +V+     A D R  VQKLN  RG V++E
Sbjct:    2 VEFHVLQCAD--CNTFQVLQVTKTN------KWKCKLCGSKQSVRKVYGRGTGA-DCRRHVQKLNTVRGHVDQE 66          
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Match: A0A2T9Y4I8_9FUNG (Uncharacterized protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9Y4I8_9FUNG)

HSP 1 Score: 48.9 bits (115), Expect = 6.310e-5
Identity = 22/72 (30.56%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    7 YIIVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFASADRAKDLRELVQKLNRRRGEVEEE 222
            ++++RCA   C  F   Q+ K        KW C++CG +Q++++++  A  A + R++VQ+LN   GE++++
Sbjct:    4 FLVLRCARDSCRIFQVQQKKKVN------KWSCKVCGEKQTLLKIYYEAPAAAECRKVVQELNYSSGELKKQ 69          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88344.20520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D2VMC5_NAEGR8.480e-1045.83Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A6A5BTV8_NAEFO2.020e-943.06Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI001CFCE7EF1.230e-841.67uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A2T9YQK6_9FUNG4.780e-839.71Uncharacterized protein n=1 Tax=Furculomyces boome... [more]
A0A7S3PL25_9STRA8.120e-838.36Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A1Y2C0C8_9FUNG1.330e-645.59SP-RING-type domain-containing protein n=1 Tax=Rhi... [more]
A0A210R046_MIZYE7.950e-642.03UPF0544 protein C5orf45-like n=2 Tax=Mizuhopecten ... [more]
L1J5E1_GUITC1.370e-540.85Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
UPI00035988A53.770e-540.54uncharacterized protein LOC101846282 n=1 Tax=Aplys... [more]
A0A2T9Y4I8_9FUNG6.310e-530.56Uncharacterized protein n=1 Tax=Smittium megazygos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88344contigM-pyrifera_M_contig88344:146..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.2408323-CDS-M-pyrifera_M_contig88344:145..3141622816793.2408323-CDS-M-pyrifera_M_contig88344:145..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88344 146..314 +
1692278181.672231-CDS-M-pyrifera_M_contig88344:145..3141692278181.672231-CDS-M-pyrifera_M_contig88344:145..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88344 146..314 +
1622816793.2561455-CDS-M-pyrifera_M_contig88344:496..5491622816793.2561455-CDS-M-pyrifera_M_contig88344:496..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88344 497..549 +
1692278181.6836898-CDS-M-pyrifera_M_contig88344:496..5491692278181.6836898-CDS-M-pyrifera_M_contig88344:496..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88344 497..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88344.20520.1prot_M-pyrifera_M_contig88344.20520.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88344 146..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88344.20520.1

>prot_M-pyrifera_M_contig88344.20520.1 ID=prot_M-pyrifera_M_contig88344.20520.1|Name=mRNA_M-pyrifera_M_contig88344.20520.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MRYIIVRCADGGCGAFMSVQEPKQRRGARAAKWKCRLCGTRQSVVRVFAS
ADRAKDLRELVQKLNRRRGEVEEE
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mRNA from alignment at M-pyrifera_M_contig88344:146..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88344.20520.1 ID=mRNA_M-pyrifera_M_contig88344.20520.1|Name=mRNA_M-pyrifera_M_contig88344.20520.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=404bp|location=Sequence derived from alignment at M-pyrifera_M_contig88344:146..549+ (Macrocystis pyrifera P11B4 male)
ATGCGGTATATCATTGTCCGTTGTGCTGATGGAGGTTGTGGGGCATTCAT GAGTGTACAAGAACCAAAGCAACGCAGAGGAGCTCGAGCAGCCAAGTGGA AGTGCCGTCTGTGTGGGACAAGGCAATCAGTGGTTCGCGTATTCGCCTCT GCTGATAGAGCCAAAGACTGTATGGGGAAGAGGAGGTTGGGGGTGGTTGG GGGTGGGTATGGTAGAGTTGATGGTTGGGGTGGGTAGTGTTTTGAGGAGG GAGAAAGTGGTGATTTTGGGAGGTAAAGATGGTTTTGTTGATTTCCCACT CCCTACTCTCCACTATCAAACACTCTCTTGATTCTTGTGTCTCAATTGCA GTGCGTGAATTGGTTCAGAAGCTGAATAGGCGACGCGGTGAGGTAGAAGA GGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88344:146..549+

>mRNA_M-pyrifera_M_contig88344.20520.1 ID=mRNA_M-pyrifera_M_contig88344.20520.1|Name=mRNA_M-pyrifera_M_contig88344.20520.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig88344:146..549+ (Macrocystis pyrifera P11B4 male)
ATGCGGTATATCATTGTCCGTTGTGCTGATGGAGGTTGTGGGGCATTCAT
GAGTGTACAAGAACCAAAGCAACGCAGAGGAGCTCGAGCAGCCAAGTGGA
AGTGCCGTCTGTGTGGGACAAGGCAATCAGTGGTTCGCGTATTCGCCTCT
GCTGATAGAGCCAAAGACTATGCGGTATATCATTGTCCGTTGTGCTGATG
GAGGTTGTGGGGCATTCATGAGTGTACAAGAACCAAAGCAACGCAGAGGA
GCTCGAGCAGCCAAGTGGAAGTGCCGTCTGTGTGGGACAAGGCAATCAGT
GGTTCGCGTATTCGCCTCTGCTGATAGAGCCAAAGACTTGCGTGAATTGG
TTCAGAAGCTGAATAGGCGACGCGGTGAGGTAGAAGAGGAGTGCGTGAAT
TGGTTCAGAAGCTGAATAGGCGACGCGGTGAGGTAGAAGAGGAG
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